ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags17g23 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF338343.1|AF338343 Oryza sativa mago nashi-like protein mRNA, complete cds Length = 820 Score = 58.0 bits (29), Expect = 5e-06 Identities = 42/47 (89%) Strand = Plus / Minus Query: 53 ttgaataggctngatcttaaagtggnggttgataagtgaaaacacga 99 ||||||||||| |||||| |||||| | ||||| ||||||||||||| Sbjct: 596 ttgaataggcttgatcttgaagtggagattgatgagtgaaaacacga 550
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 58.0 bits (29), Expect = 5e-06 Identities = 42/47 (89%) Strand = Plus / Minus Query: 53 ttgaataggctngatcttaaagtggnggttgataagtgaaaacacga 99 ||||||||||| |||||| |||||| | ||||| ||||||||||||| Sbjct: 10961094 ttgaataggcttgatcttgaagtggagattgatgagtgaaaacacga 10961048
>dbj|AK121477.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149H05, full insert sequence Length = 732 Score = 58.0 bits (29), Expect = 5e-06 Identities = 42/47 (89%) Strand = Plus / Minus Query: 53 ttgaataggctngatcttaaagtggnggttgataagtgaaaacacga 99 ||||||||||| |||||| |||||| | ||||| ||||||||||||| Sbjct: 550 ttgaataggcttgatcttgaagtggagattgatgagtgaaaacacga 504
>dbj|AK063847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-122-C07, full insert sequence Length = 805 Score = 58.0 bits (29), Expect = 5e-06 Identities = 42/47 (89%) Strand = Plus / Minus Query: 53 ttgaataggctngatcttaaagtggnggttgataagtgaaaacacga 99 ||||||||||| |||||| |||||| | ||||| ||||||||||||| Sbjct: 549 ttgaataggcttgatcttgaagtggagattgatgagtgaaaacacga 503
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 58.0 bits (29), Expect = 5e-06 Identities = 42/47 (89%) Strand = Plus / Minus Query: 53 ttgaataggctngatcttaaagtggnggttgataagtgaaaacacga 99 ||||||||||| |||||| |||||| | ||||| ||||||||||||| Sbjct: 10960793 ttgaataggcttgatcttgaagtggagattgatgagtgaaaacacga 10960747
>emb|AL954152.5|CNS08CCQ Oryza sativa chromosome 12, . BAC OSJNBb0034E16 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 124204 Score = 58.0 bits (29), Expect = 5e-06 Identities = 42/47 (89%) Strand = Plus / Minus Query: 53 ttgaataggctngatcttaaagtggnggttgataagtgaaaacacga 99 ||||||||||| |||||| |||||| | ||||| ||||||||||||| Sbjct: 110157 ttgaataggcttgatcttgaagtggagattgatgagtgaaaacacga 110111
>ref|XM_479710.1| Oryza sativa (japonica cultivar-group), mRNA Length = 318 Score = 50.1 bits (25), Expect = 0.001 Identities = 41/47 (87%) Strand = Plus / Minus Query: 53 ttgaataggctngatcttaaagtggnggttgataagtgaaaacacga 99 |||||| |||| |||||| |||||| | ||||| ||||||||||||| Sbjct: 312 ttgaatgggcttgatcttgaagtggagattgatgagtgaaaacacga 266
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 50.1 bits (25), Expect = 0.001 Identities = 41/47 (87%) Strand = Plus / Minus Query: 53 ttgaataggctngatcttaaagtggnggttgataagtgaaaacacga 99 |||||| |||| |||||| |||||| | ||||| ||||||||||||| Sbjct: 381670 ttgaatgggcttgatcttgaagtggagattgatgagtgaaaacacga 381624
>dbj|AP004462.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0450B04 Length = 153268 Score = 50.1 bits (25), Expect = 0.001 Identities = 41/47 (87%) Strand = Plus / Minus Query: 53 ttgaataggctngatcttaaagtggnggttgataagtgaaaacacga 99 |||||| |||| |||||| |||||| | ||||| ||||||||||||| Sbjct: 91184 ttgaatgggcttgatcttgaagtggagattgatgagtgaaaacacga 91138
>gb|AY103591.1| Zea mays PCO111548 mRNA sequence Length = 848 Score = 44.1 bits (22), Expect = 0.071 Identities = 35/40 (87%) Strand = Plus / Minus Query: 60 ggctngatcttaaagtggnggttgataagtgaaaacacga 99 |||| |||||| ||||| ||||||| ||||||||||||| Sbjct: 566 ggcttgatcttgaagtgaaggttgatgagtgaaaacacga 527 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 265,967 Number of Sequences: 3902068 Number of extensions: 265967 Number of successful extensions: 12951 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 12931 Number of HSP's gapped (non-prelim): 20 length of query: 99 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 78 effective length of database: 17,151,101,840 effective search space: 1337785943520 effective search space used: 1337785943520 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
