ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags17g22 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY111490.1| Zea mays CL44711_1 mRNA sequence Length = 637 Score = 174 bits (88), Expect = 2e-40 Identities = 155/176 (88%), Gaps = 1/176 (0%) Strand = Plus / Plus Query: 421 tttgtgataccatgagtaacgatgaaaactcggtaccacaaactatggtgtgactgagtg 480 ||||||||| |||||| |||||||| |||| |||||| || ||||||||||||||||| Sbjct: 411 tttgtgataacatgagcaacgatgagaactgtgtaccagcaattatggtgtgactgagtg 470 Query: 481 gatgggctgcacaggaaagcaccctttcagataagggaataaacttgttttctgcaggtt 540 ||||||||||||||||||||||||||| ||||| |||| |||||||||| ||||||||| Sbjct: 471 gatgggctgcacaggaaagcaccctttgggataaaggaacaaacttgtttcctgcaggtt 530 Query: 541 gattttcctcgcagccttttgtttcctcgttgtagtccgacgtggcatgcggagct 596 |||||||| || || || |||||||||| ||||||||| || |||||||| ||||| Sbjct: 531 gattttccccggagactcttgtttcctctttgtagtcc-acatggcatgcagagct 585
>ref|XM_466484.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2085 Score = 109 bits (55), Expect = 1e-20 Identities = 119/139 (85%), Gaps = 1/139 (0%) Strand = Plus / Minus Query: 480 ggatgggctgcacaggaaagcaccctttcagataagggaataaacttgttttctgcaggt 539 ||||| ||||||||||||| || || | |||| | ||||||||||||||| |||||||| Sbjct: 1512 ggatgtgctgcacaggaaacaactctctgagatgaaggaataaacttgtttgctgcaggt 1453 Query: 540 tgattttcctcgcagccttttgtttcctcgttgtagtccgacgtggcatgcggagcttgt 599 | ||||| ||| ||||| || ||||||| ||||||| |||| |||||||| || ||||| Sbjct: 1452 ttcttttcatcggagcctcttatttcctcattgtagt-cgacatggcatgctgaacttgt 1394 Query: 600 atctggatgaaaatccagt 618 ||||||||||||||||||| Sbjct: 1393 atctggatgaaaatccagt 1375
>dbj|AK102016.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033080F08, full insert sequence Length = 2085 Score = 109 bits (55), Expect = 1e-20 Identities = 119/139 (85%), Gaps = 1/139 (0%) Strand = Plus / Minus Query: 480 ggatgggctgcacaggaaagcaccctttcagataagggaataaacttgttttctgcaggt 539 ||||| ||||||||||||| || || | |||| | ||||||||||||||| |||||||| Sbjct: 1512 ggatgtgctgcacaggaaacaactctctgagatgaaggaataaacttgtttgctgcaggt 1453 Query: 540 tgattttcctcgcagccttttgtttcctcgttgtagtccgacgtggcatgcggagcttgt 599 | ||||| ||| ||||| || ||||||| ||||||| |||| |||||||| || ||||| Sbjct: 1452 ttcttttcatcggagcctcttatttcctcattgtagt-cgacatggcatgctgaacttgt 1394 Query: 600 atctggatgaaaatccagt 618 ||||||||||||||||||| Sbjct: 1393 atctggatgaaaatccagt 1375
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 58.0 bits (29), Expect = 4e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 578 cgacgtggcatgcggagcttgtatctggatgaaaatccagt 618 |||| |||||||| || |||||||||||||||||||||||| Sbjct: 22892412 cgacatggcatgctgaacttgtatctggatgaaaatccagt 22892452 Score = 58.0 bits (29), Expect = 4e-05 Identities = 74/89 (83%) Strand = Plus / Plus Query: 480 ggatgggctgcacaggaaagcaccctttcagataagggaataaacttgttttctgcaggt 539 ||||| ||||||||||||| || || | |||| | ||||||||||||||| |||||||| Sbjct: 22892212 ggatgtgctgcacaggaaacaactctctgagatgaaggaataaacttgtttgctgcaggt 22892271 Query: 540 tgattttcctcgcagccttttgtttcctc 568 | ||||| ||| ||||| || ||||||| Sbjct: 22892272 ttcttttcatcggagcctcttatttcctc 22892300
>dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0016G10 Length = 143211 Score = 58.0 bits (29), Expect = 4e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 578 cgacgtggcatgcggagcttgtatctggatgaaaatccagt 618 |||| |||||||| || |||||||||||||||||||||||| Sbjct: 12214 cgacatggcatgctgaacttgtatctggatgaaaatccagt 12254 Score = 58.0 bits (29), Expect = 4e-05 Identities = 74/89 (83%) Strand = Plus / Plus Query: 480 ggatgggctgcacaggaaagcaccctttcagataagggaataaacttgttttctgcaggt 539 ||||| ||||||||||||| || || | |||| | ||||||||||||||| |||||||| Sbjct: 12014 ggatgtgctgcacaggaaacaactctctgagatgaaggaataaacttgtttgctgcaggt 12073 Query: 540 tgattttcctcgcagccttttgtttcctc 568 | ||||| ||| ||||| || ||||||| Sbjct: 12074 ttcttttcatcggagcctcttatttcctc 12102
>dbj|AP005640.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0006O15 Length = 139723 Score = 58.0 bits (29), Expect = 4e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 578 cgacgtggcatgcggagcttgtatctggatgaaaatccagt 618 |||| |||||||| || |||||||||||||||||||||||| Sbjct: 125750 cgacatggcatgctgaacttgtatctggatgaaaatccagt 125790 Score = 58.0 bits (29), Expect = 4e-05 Identities = 74/89 (83%) Strand = Plus / Plus Query: 480 ggatgggctgcacaggaaagcaccctttcagataagggaataaacttgttttctgcaggt 539 ||||| ||||||||||||| || || | |||| | ||||||||||||||| |||||||| Sbjct: 125550 ggatgtgctgcacaggaaacaactctctgagatgaaggaataaacttgtttgctgcaggt 125609 Query: 540 tgattttcctcgcagccttttgtttcctc 568 | ||||| ||| ||||| || ||||||| Sbjct: 125610 ttcttttcatcggagcctcttatttcctc 125638
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 acaaacagtaaattacaagcg 102 ||||||||||||||||||||| Sbjct: 2445510 acaaacagtaaattacaagcg 2445490
>gb|AC141893.4| Mus musculus BAC clone RP23-324F17 from chromosome 15, complete sequence Length = 182603 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 tccaacacttgaaaggacaag 160 ||||||||||||||||||||| Sbjct: 139859 tccaacacttgaaaggacaag 139879
>gb|AC155317.5| Mus musculus BAC clone RP23-89D6 from chromosome 15, complete sequence Length = 251377 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 140 tccaacacttgaaaggacaag 160 ||||||||||||||||||||| Sbjct: 140789 tccaacacttgaaaggacaag 140769
>gb|AC162465.3| Mus musculus 6 BAC RP24-108G5 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 203546 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 528 ttttctgcaggttgattttcc 548 ||||||||||||||||||||| Sbjct: 36557 ttttctgcaggttgattttcc 36577
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 acaaacagtaaattacaagcg 102 ||||||||||||||||||||| Sbjct: 2445620 acaaacagtaaattacaagcg 2445600
>gb|AC119796.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1172F09, complete sequence Length = 106057 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 acaaacagtaaattacaagcg 102 ||||||||||||||||||||| Sbjct: 18006 acaaacagtaaattacaagcg 17986
>gb|AC102235.10| Mus musculus chromosome 3, clone RP24-97D20, complete sequence Length = 183178 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 131 gccttcaagtccaacacttgaaagg 155 ||||| ||||||||||||||||||| Sbjct: 105562 gcctttaagtccaacacttgaaagg 105586
>gb|AC158657.2| Mus musculus 6 BAC RP23-395C12 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 202215 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 528 ttttctgcaggttgattttcc 548 ||||||||||||||||||||| Sbjct: 105728 ttttctgcaggttgattttcc 105708
>emb|AL591388.9| Zebrafish DNA sequence from clone BUSM1-255P14 in linkage group 7, complete sequence Length = 97239 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 agaggacagcactttctgaaa 79 ||||||||||||||||||||| Sbjct: 8024 agaggacagcactttctgaaa 8044
>gb|AC135668.5| Mus musculus BAC clone RP23-280P7 from chromosome 6, complete sequence Length = 207975 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 aacacttgaaaggacaagtg 162 |||||||||||||||||||| Sbjct: 105152 aacacttgaaaggacaagtg 105171
>ref|XM_516571.1| PREDICTED: Pan troglodytes similar to COP9 signalosome subunit 8 isoform 1 (LOC460493), mRNA Length = 663 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 gataagggaataaacttgtt 529 |||||||||||||||||||| Sbjct: 510 gataagggaataaacttgtt 491
>ref|NM_198189.2| Homo sapiens COP9 constitutive photomorphogenic homolog subunit 8 (Arabidopsis) (COPS8), transcript variant 2, mRNA Length = 2339 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 gataagggaataaacttgtt 529 |||||||||||||||||||| Sbjct: 1137 gataagggaataaacttgtt 1118
>ref|NM_006710.4| Homo sapiens COP9 constitutive photomorphogenic homolog subunit 8 (Arabidopsis) (COPS8), transcript variant 1, mRNA Length = 2274 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 gataagggaataaacttgtt 529 |||||||||||||||||||| Sbjct: 1072 gataagggaataaacttgtt 1053
>ref|XM_516177.1| PREDICTED: Pan troglodytes similar to COP9 signalosome subunit 8 isoform 1 (LOC460043), mRNA Length = 936 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 gataagggaataaacttgtt 529 |||||||||||||||||||| Sbjct: 587 gataagggaataaacttgtt 568
>gb|BC003090.1| Homo sapiens COP9 constitutive photomorphogenic homolog subunit 8 (Arabidopsis), transcript variant 1, mRNA (cDNA clone MGC:1297 IMAGE:3503287), complete cds Length = 1637 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 gataagggaataaacttgtt 529 |||||||||||||||||||| Sbjct: 596 gataagggaataaacttgtt 577
>gb|DQ017631.1| Danio rerio TR2 mRNA, partial cds Length = 1740 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 426 gataccatgagtaacgatga 445 |||||||||||||||||||| Sbjct: 856 gataccatgagtaacgatga 875
>gb|U51205.1|HSU51205 Homo sapiens COP9 signalosome subunit 8 CSN8 (CSN8) mRNA, complete cds Length = 922 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 gataagggaataaacttgtt 529 |||||||||||||||||||| Sbjct: 597 gataagggaataaacttgtt 578
>ref|NM_001020622.1| Danio rerio zgc:110672 (zgc:110672), mRNA Length = 2397 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 426 gataccatgagtaacgatga 445 |||||||||||||||||||| Sbjct: 1097 gataccatgagtaacgatga 1116
>emb|AL929403.9| Human DNA sequence from clone RP13-438O9 on chromosome 6, complete sequence Length = 86576 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 515 gggaataaacttgttttctgcagg 538 |||||||||||| ||||||||||| Sbjct: 60194 gggaataaactttttttctgcagg 60171
>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome Length = 5205140 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 ctgaaacaacaaacagtaaa 93 |||||||||||||||||||| Sbjct: 4935727 ctgaaacaacaaacagtaaa 4935708
>gb|BC036499.1| Homo sapiens COP9 constitutive photomorphogenic homolog subunit 8 (Arabidopsis), transcript variant 1, mRNA (cDNA clone MGC:43256 IMAGE:5264527), complete cds Length = 2244 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 gataagggaataaacttgtt 529 |||||||||||||||||||| Sbjct: 1206 gataagggaataaacttgtt 1187
>emb|CR857307.1| Pongo pygmaeus mRNA; cDNA DKFZp469J0132 (from clone DKFZp469J0132) Length = 1688 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 gataagggaataaacttgtt 529 |||||||||||||||||||| Sbjct: 628 gataagggaataaacttgtt 609
>emb|CR625642.1| full-length cDNA clone CS0DI053YE04 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1611 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 gataagggaataaacttgtt 529 |||||||||||||||||||| Sbjct: 591 gataagggaataaacttgtt 572
>emb|CR624288.1| full-length cDNA clone CS0DI060YF09 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1584 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 gataagggaataaacttgtt 529 |||||||||||||||||||| Sbjct: 582 gataagggaataaacttgtt 563
>emb|CR624139.1| full-length cDNA clone CS0DF016YE07 of Fetal brain of Homo sapiens (human) Length = 933 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 gataagggaataaacttgtt 529 |||||||||||||||||||| Sbjct: 587 gataagggaataaacttgtt 568
>emb|CR621907.1| full-length cDNA clone CS0DN004YN01 of Adult brain of Homo sapiens (human) Length = 1587 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 gataagggaataaacttgtt 529 |||||||||||||||||||| Sbjct: 568 gataagggaataaacttgtt 549
>emb|CR619073.1| full-length cDNA clone CS0DK001YK07 of HeLa cells Cot 25-normalized of Homo sapiens (human) Length = 1603 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 gataagggaataaacttgtt 529 |||||||||||||||||||| Sbjct: 587 gataagggaataaacttgtt 568
>emb|CR612357.1| full-length cDNA clone CS0DA010YL02 of Neuroblastoma of Homo sapiens (human) Length = 1591 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 gataagggaataaacttgtt 529 |||||||||||||||||||| Sbjct: 579 gataagggaataaacttgtt 560
>emb|CR613293.1| full-length cDNA clone CS0DL011YG15 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 1569 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 gataagggaataaacttgtt 529 |||||||||||||||||||| Sbjct: 597 gataagggaataaacttgtt 578
>emb|CR611203.1| full-length cDNA clone CS0DJ014YC12 of T cells (Jurkat cell line) Cot 10-normalized of Homo sapiens (human) Length = 1603 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 gataagggaataaacttgtt 529 |||||||||||||||||||| Sbjct: 582 gataagggaataaacttgtt 563
>emb|CR607837.1| full-length cDNA clone CS0DF021YF24 of Fetal brain of Homo sapiens (human) Length = 1577 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 gataagggaataaacttgtt 529 |||||||||||||||||||| Sbjct: 604 gataagggaataaacttgtt 585
>emb|CR605123.1| full-length cDNA clone CS0DI002YO05 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1572 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 gataagggaataaacttgtt 529 |||||||||||||||||||| Sbjct: 582 gataagggaataaacttgtt 563
>emb|CR601867.1| full-length cDNA clone CS0DI081YA14 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1564 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 gataagggaataaacttgtt 529 |||||||||||||||||||| Sbjct: 587 gataagggaataaacttgtt 568
>emb|CR595867.1| full-length cDNA clone CS0DG002YI15 of B cells (Ramos cell line) of Homo sapiens (human) Length = 1576 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 gataagggaataaacttgtt 529 |||||||||||||||||||| Sbjct: 561 gataagggaataaacttgtt 542
>emb|CR595044.1| full-length cDNA clone CS0DN005YI22 of Adult brain of Homo sapiens (human) Length = 1591 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 gataagggaataaacttgtt 529 |||||||||||||||||||| Sbjct: 597 gataagggaataaacttgtt 578
>emb|CR594862.1| full-length cDNA clone CS0DI061YE09 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1578 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 gataagggaataaacttgtt 529 |||||||||||||||||||| Sbjct: 582 gataagggaataaacttgtt 563
>emb|CR593683.1| full-length cDNA clone CS0DI009YL11 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1587 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 gataagggaataaacttgtt 529 |||||||||||||||||||| Sbjct: 587 gataagggaataaacttgtt 568
>emb|CR593384.1| full-length cDNA clone CS0DI067YA06 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 992 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 gataagggaataaacttgtt 529 |||||||||||||||||||| Sbjct: 623 gataagggaataaacttgtt 604
>emb|CR456994.1| Homo sapiens full open reading frame cDNA clone RZPDo834E075D for gene COPS8, COP9 constitutive photomorphogenic homolog subunit 8 (Arabidopsis); complete cds, incl. stopcodon Length = 630 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 gataagggaataaacttgtt 529 |||||||||||||||||||| Sbjct: 548 gataagggaataaacttgtt 529
>gb|AC092416.3| Homo sapiens chromosome 3 clone RP11-89A12, complete sequence Length = 23515 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 510 gataagggaataaacttgtt 529 |||||||||||||||||||| Sbjct: 18795 gataagggaataaacttgtt 18814
>gb|BC095365.1| Danio rerio zgc:110672, mRNA (cDNA clone MGC:110672 IMAGE:7165974), complete cds Length = 2397 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 426 gataccatgagtaacgatga 445 |||||||||||||||||||| Sbjct: 1097 gataccatgagtaacgatga 1116
>ref|NG_003103.1| Homo sapiens COP9 pseudogene (LOC375350) on chromosome 3 Length = 982 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 gataagggaataaacttgtt 529 |||||||||||||||||||| Sbjct: 660 gataagggaataaacttgtt 641
>gb|AC105760.3| Homo sapiens BAC clone RP11-346I14 from 2, complete sequence Length = 77730 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 gataagggaataaacttgtt 529 |||||||||||||||||||| Sbjct: 60948 gataagggaataaacttgtt 60929
>gb|AE005672.2| Streptococcus pneumoniae TIGR4, complete genome Length = 2160842 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 280 tcgctattacgtgcaggacgtcca 303 |||||||||||||||| ||||||| Sbjct: 1168650 tcgctattacgtgcagcacgtcca 1168673
>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome Length = 5277274 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 ctgaaacaacaaacagtaaa 93 |||||||||||||||||||| Sbjct: 5002270 ctgaaacaacaaacagtaaa 5002251
>emb|AL807237.17| Mouse DNA sequence from clone RP23-384O9 on chromosome X, complete sequence Length = 162709 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 12 aaattaaactgattccaaatagtt 35 |||||||| ||||||||||||||| Sbjct: 99348 aaattaaagtgattccaaatagtt 99325
>gb|BC080617.1| Homo sapiens COP9 constitutive photomorphogenic homolog subunit 8 (Arabidopsis), transcript variant 1, mRNA (cDNA clone MGC:99545 IMAGE:6252628), complete cds Length = 961 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 gataagggaataaacttgtt 529 |||||||||||||||||||| Sbjct: 568 gataagggaataaacttgtt 549
>emb|BX640593.8| Zebrafish DNA sequence from clone DKEY-183C16 in linkage group 4, complete sequence Length = 218192 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 426 gataccatgagtaacgatga 445 |||||||||||||||||||| Sbjct: 45864 gataccatgagtaacgatga 45883
>emb|BX957285.9| Zebrafish DNA sequence from clone CH211-160M18 in linkage group 10, complete sequence Length = 156078 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 ctacacaacacaaattaaac 20 |||||||||||||||||||| Sbjct: 141210 ctacacaacacaaattaaac 141191
>gb|U40942.2| Caenorhabditis elegans cosmid K02E10, complete sequence Length = 38434 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 513 aagggaataaacttgttttc 532 |||||||||||||||||||| Sbjct: 2167 aagggaataaacttgttttc 2186
>emb|CR936437.14| Zebrafish DNA sequence from clone CH211-197I23 in linkage group 3, complete sequence Length = 96056 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 agaggacagcactttctgaa 78 |||||||||||||||||||| Sbjct: 34043 agaggacagcactttctgaa 34062
>emb|AL807251.2| Human DNA sequence from clone RP11-425M20 on chromosome 6, complete sequence Length = 40767 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 515 gggaataaacttgttttctgcagg 538 |||||||||||| ||||||||||| Sbjct: 14401 gggaataaactttttttctgcagg 14378 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,192,795 Number of Sequences: 3902068 Number of extensions: 5192795 Number of successful extensions: 101282 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 101056 Number of HSP's gapped (non-prelim): 224 length of query: 638 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 615 effective length of database: 17,143,297,704 effective search space: 10543128087960 effective search space used: 10543128087960 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
