ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags17g08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_197930.1| Oryza sativa (japonica cultivar-group) putative Clp protease (OSJNBa0056G17.6), mRNA Length = 897 Score = 492 bits (248), Expect = e-136 Identities = 410/464 (88%) Strand = Plus / Minus Query: 276 tagtatatctcatcatctgggacatccggcgtaagaaacttctgagggtccttgtacatt 335 |||||||||||||||||||||||||| || ||||| |||||||| || |||||||||| | Sbjct: 881 tagtatatctcatcatctgggacatcaggtgtaaggaacttctgtggatccttgtacagt 822 Query: 336 tcctcatagttgtatttaggtttcaccctctctggaaccggctcaagtgggatgatgctg 395 ||||| ||||||||||| || ||||||||||| || || ||||||||||||||||| ||| Sbjct: 821 tcctcgtagttgtatttcggcttcaccctctccgggacaggctcaagtgggatgatactg 762 Query: 396 tcttcgtcaatcacaccatcaatgatcccgtaatccacggcctcaagaggacccatgtat 455 ||| |||| || |||| || |||| ||||||||| || ||||||||||||||||| ||| Sbjct: 761 tctccgtcgattacactgtcgatgagcccgtaatcaacagcctcaagaggacccatatat 702 Query: 456 cggtccctatcgatgtctttctctacctgctccagtgtgcgtcccgtaaagcctgatatc 515 | ||| ||||| ||||||||||| ||||||||| | |||||||| || || |||||||| Sbjct: 701 ctgtctctatcaatgtctttctcaacctgctccggagtgcgtcctgtgaaacctgatata 642 Query: 516 agccggatgacattcctcttgctagccagaatttccttggcttggacctctacatccaag 575 ||||||||||||||||||||| ||| || || |||||||| |||||||| ||||||||| Sbjct: 641 agccggatgacattcctcttgttagtcaatatctccttggcctggacctcgacatccaag 582 Query: 576 gcctggccactcgcgcctcccacgggctgatgcatcataatcctggtgttgggcatggcg 635 ||||| ||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||| Sbjct: 581 gcctgcccacttgcgcctccaacgggctgatggatcattatcctggtgttgggcatggcg 522 Query: 636 aaccgtttgccctttgcgccaccaccaaggagtatagaagctgtggatccagctatgccc 695 || || |||||||||| |||||||||||||| ||||||||| ||||| |||||||||||| Sbjct: 521 aatcgcttgccctttgtgccaccaccaaggattatagaagcagtggaaccagctatgccc 462 Query: 696 attccaatagtggatacatctgccctcaccagctgcattacatc 739 | |||||||||||| |||||||||||||| |||||||||||||| Sbjct: 461 aatccaatagtggaaacatctgccctcacgagctgcattacatc 418
>gb|AC018727.10| Oryza sativa chromosome 10 BAC OSJNBa0056G17 genomic sequence, complete sequence Length = 139999 Score = 492 bits (248), Expect = e-136 Identities = 410/464 (88%) Strand = Plus / Minus Query: 276 tagtatatctcatcatctgggacatccggcgtaagaaacttctgagggtccttgtacatt 335 |||||||||||||||||||||||||| || ||||| |||||||| || |||||||||| | Sbjct: 126257 tagtatatctcatcatctgggacatcaggtgtaaggaacttctgtggatccttgtacagt 126198 Query: 336 tcctcatagttgtatttaggtttcaccctctctggaaccggctcaagtgggatgatgctg 395 ||||| ||||||||||| || ||||||||||| || || ||||||||||||||||| ||| Sbjct: 126197 tcctcgtagttgtatttcggcttcaccctctccgggacaggctcaagtgggatgatactg 126138 Query: 396 tcttcgtcaatcacaccatcaatgatcccgtaatccacggcctcaagaggacccatgtat 455 ||| |||| || |||| || |||| ||||||||| || ||||||||||||||||| ||| Sbjct: 126137 tctccgtcgattacactgtcgatgagcccgtaatcaacagcctcaagaggacccatatat 126078 Query: 456 cggtccctatcgatgtctttctctacctgctccagtgtgcgtcccgtaaagcctgatatc 515 | ||| ||||| ||||||||||| ||||||||| | |||||||| || || |||||||| Sbjct: 126077 ctgtctctatcaatgtctttctcaacctgctccggagtgcgtcctgtgaaacctgatata 126018 Query: 516 agccggatgacattcctcttgctagccagaatttccttggcttggacctctacatccaag 575 ||||||||||||||||||||| ||| || || |||||||| |||||||| ||||||||| Sbjct: 126017 agccggatgacattcctcttgttagtcaatatctccttggcctggacctcgacatccaag 125958 Query: 576 gcctggccactcgcgcctcccacgggctgatgcatcataatcctggtgttgggcatggcg 635 ||||| ||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||| Sbjct: 125957 gcctgcccacttgcgcctccaacgggctgatggatcattatcctggtgttgggcatggcg 125898 Query: 636 aaccgtttgccctttgcgccaccaccaaggagtatagaagctgtggatccagctatgccc 695 || || |||||||||| |||||||||||||| ||||||||| ||||| |||||||||||| Sbjct: 125897 aatcgcttgccctttgtgccaccaccaaggattatagaagcagtggaaccagctatgccc 125838 Query: 696 attccaatagtggatacatctgccctcaccagctgcattacatc 739 | |||||||||||| |||||||||||||| |||||||||||||| Sbjct: 125837 aatccaatagtggaaacatctgccctcacgagctgcattacatc 125794
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 492 bits (248), Expect = e-136 Identities = 410/464 (88%) Strand = Plus / Minus Query: 276 tagtatatctcatcatctgggacatccggcgtaagaaacttctgagggtccttgtacatt 335 |||||||||||||||||||||||||| || ||||| |||||||| || |||||||||| | Sbjct: 22671588 tagtatatctcatcatctgggacatcaggtgtaaggaacttctgtggatccttgtacagt 22671529 Query: 336 tcctcatagttgtatttaggtttcaccctctctggaaccggctcaagtgggatgatgctg 395 ||||| ||||||||||| || ||||||||||| || || ||||||||||||||||| ||| Sbjct: 22671528 tcctcgtagttgtatttcggcttcaccctctccgggacaggctcaagtgggatgatactg 22671469 Query: 396 tcttcgtcaatcacaccatcaatgatcccgtaatccacggcctcaagaggacccatgtat 455 ||| |||| || |||| || |||| ||||||||| || ||||||||||||||||| ||| Sbjct: 22671468 tctccgtcgattacactgtcgatgagcccgtaatcaacagcctcaagaggacccatatat 22671409 Query: 456 cggtccctatcgatgtctttctctacctgctccagtgtgcgtcccgtaaagcctgatatc 515 | ||| ||||| ||||||||||| ||||||||| | |||||||| || || |||||||| Sbjct: 22671408 ctgtctctatcaatgtctttctcaacctgctccggagtgcgtcctgtgaaacctgatata 22671349 Query: 516 agccggatgacattcctcttgctagccagaatttccttggcttggacctctacatccaag 575 ||||||||||||||||||||| ||| || || |||||||| |||||||| ||||||||| Sbjct: 22671348 agccggatgacattcctcttgttagtcaatatctccttggcctggacctcgacatccaag 22671289 Query: 576 gcctggccactcgcgcctcccacgggctgatgcatcataatcctggtgttgggcatggcg 635 ||||| ||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||| Sbjct: 22671288 gcctgcccacttgcgcctccaacgggctgatggatcattatcctggtgttgggcatggcg 22671229 Query: 636 aaccgtttgccctttgcgccaccaccaaggagtatagaagctgtggatccagctatgccc 695 || || |||||||||| |||||||||||||| ||||||||| ||||| |||||||||||| Sbjct: 22671228 aatcgcttgccctttgtgccaccaccaaggattatagaagcagtggaaccagctatgccc 22671169 Query: 696 attccaatagtggatacatctgccctcaccagctgcattacatc 739 | |||||||||||| |||||||||||||| |||||||||||||| Sbjct: 22671168 aatccaatagtggaaacatctgccctcacgagctgcattacatc 22671125
>dbj|AK104823.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-F03, full insert sequence Length = 1125 Score = 492 bits (248), Expect = e-136 Identities = 410/464 (88%) Strand = Plus / Minus Query: 276 tagtatatctcatcatctgggacatccggcgtaagaaacttctgagggtccttgtacatt 335 |||||||||||||||||||||||||| || ||||| |||||||| || |||||||||| | Sbjct: 894 tagtatatctcatcatctgggacatcaggtgtaaggaacttctgtggatccttgtacagt 835 Query: 336 tcctcatagttgtatttaggtttcaccctctctggaaccggctcaagtgggatgatgctg 395 ||||| ||||||||||| || ||||||||||| || || ||||||||||||||||| ||| Sbjct: 834 tcctcgtagttgtatttcggcttcaccctctccgggacaggctcaagtgggatgatactg 775 Query: 396 tcttcgtcaatcacaccatcaatgatcccgtaatccacggcctcaagaggacccatgtat 455 ||| |||| || |||| || |||| ||||||||| || ||||||||||||||||| ||| Sbjct: 774 tctccgtcgattacactgtcgatgagcccgtaatcaacagcctcaagaggacccatatat 715 Query: 456 cggtccctatcgatgtctttctctacctgctccagtgtgcgtcccgtaaagcctgatatc 515 | ||| ||||| ||||||||||| ||||||||| | |||||||| || || |||||||| Sbjct: 714 ctgtctctatcaatgtctttctcaacctgctccggagtgcgtcctgtgaaacctgatata 655 Query: 516 agccggatgacattcctcttgctagccagaatttccttggcttggacctctacatccaag 575 ||||||||||||||||||||| ||| || || |||||||| |||||||| ||||||||| Sbjct: 654 agccggatgacattcctcttgttagtcaatatctccttggcctggacctcgacatccaag 595 Query: 576 gcctggccactcgcgcctcccacgggctgatgcatcataatcctggtgttgggcatggcg 635 ||||| ||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||| Sbjct: 594 gcctgcccacttgcgcctccaacgggctgatggatcattatcctggtgttgggcatggcg 535 Query: 636 aaccgtttgccctttgcgccaccaccaaggagtatagaagctgtggatccagctatgccc 695 || || |||||||||| |||||||||||||| ||||||||| ||||| |||||||||||| Sbjct: 534 aatcgcttgccctttgtgccaccaccaaggattatagaagcagtggaaccagctatgccc 475 Query: 696 attccaatagtggatacatctgccctcaccagctgcattacatc 739 | |||||||||||| |||||||||||||| |||||||||||||| Sbjct: 474 aatccaatagtggaaacatctgccctcacgagctgcattacatc 431
>dbj|AK104589.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-H06, full insert sequence Length = 1045 Score = 492 bits (248), Expect = e-136 Identities = 410/464 (88%) Strand = Plus / Minus Query: 276 tagtatatctcatcatctgggacatccggcgtaagaaacttctgagggtccttgtacatt 335 |||||||||||||||||||||||||| || ||||| |||||||| || |||||||||| | Sbjct: 888 tagtatatctcatcatctgggacatcaggtgtaaggaacttctgtggatccttgtacagt 829 Query: 336 tcctcatagttgtatttaggtttcaccctctctggaaccggctcaagtgggatgatgctg 395 ||||| ||||||||||| || ||||||||||| || || ||||||||||||||||| ||| Sbjct: 828 tcctcgtagttgtatttcggcttcaccctctccgggacaggctcaagtgggatgatactg 769 Query: 396 tcttcgtcaatcacaccatcaatgatcccgtaatccacggcctcaagaggacccatgtat 455 ||| |||| || |||| || |||| ||||||||| || ||||||||||||||||| ||| Sbjct: 768 tctccgtcgattacactgtcgatgagcccgtaatcaacagcctcaagaggacccatatat 709 Query: 456 cggtccctatcgatgtctttctctacctgctccagtgtgcgtcccgtaaagcctgatatc 515 | ||| ||||| ||||||||||| ||||||||| | |||||||| || || |||||||| Sbjct: 708 ctgtctctatcaatgtctttctcaacctgctccggagtgcgtcctgtgaaacctgatata 649 Query: 516 agccggatgacattcctcttgctagccagaatttccttggcttggacctctacatccaag 575 ||||||||||||||||||||| ||| || || |||||||| |||||||| ||||||||| Sbjct: 648 agccggatgacattcctcttgttagtcaatatctccttggcctggacctcgacatccaag 589 Query: 576 gcctggccactcgcgcctcccacgggctgatgcatcataatcctggtgttgggcatggcg 635 ||||| ||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||| Sbjct: 588 gcctgcccacttgcgcctccaacgggctgatggatcattatcctggtgttgggcatggcg 529 Query: 636 aaccgtttgccctttgcgccaccaccaaggagtatagaagctgtggatccagctatgccc 695 || || |||||||||| |||||||||||||| ||||||||| ||||| |||||||||||| Sbjct: 528 aatcgcttgccctttgtgccaccaccaaggattatagaagcagtggaaccagctatgccc 469 Query: 696 attccaatagtggatacatctgccctcaccagctgcattacatc 739 | |||||||||||| |||||||||||||| |||||||||||||| Sbjct: 468 aatccaatagtggaaacatctgccctcacgagctgcattacatc 425
>dbj|AK104666.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-312-A06, full insert sequence Length = 1069 Score = 492 bits (248), Expect = e-136 Identities = 410/464 (88%) Strand = Plus / Minus Query: 276 tagtatatctcatcatctgggacatccggcgtaagaaacttctgagggtccttgtacatt 335 |||||||||||||||||||||||||| || ||||| |||||||| || |||||||||| | Sbjct: 892 tagtatatctcatcatctgggacatcaggtgtaaggaacttctgtggatccttgtacagt 833 Query: 336 tcctcatagttgtatttaggtttcaccctctctggaaccggctcaagtgggatgatgctg 395 ||||| ||||||||||| || ||||||||||| || || ||||||||||||||||| ||| Sbjct: 832 tcctcgtagttgtatttcggcttcaccctctccgggacaggctcaagtgggatgatactg 773 Query: 396 tcttcgtcaatcacaccatcaatgatcccgtaatccacggcctcaagaggacccatgtat 455 ||| |||| || |||| || |||| ||||||||| || ||||||||||||||||| ||| Sbjct: 772 tctccgtcgattacactgtcgatgagcccgtaatcaacagcctcaagaggacccatatat 713 Query: 456 cggtccctatcgatgtctttctctacctgctccagtgtgcgtcccgtaaagcctgatatc 515 | ||| ||||| ||||||||||| ||||||||| | |||||||| || || |||||||| Sbjct: 712 ctgtctctatcaatgtctttctcaacctgctccggagtgcgtcctgtgaaacctgatata 653 Query: 516 agccggatgacattcctcttgctagccagaatttccttggcttggacctctacatccaag 575 ||||||||||||||||||||| ||| || || |||||||| |||||||| ||||||||| Sbjct: 652 agccggatgacattcctcttgttagtcaatatctccttggcctggacctcgacatccaag 593 Query: 576 gcctggccactcgcgcctcccacgggctgatgcatcataatcctggtgttgggcatggcg 635 ||||| ||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||| Sbjct: 592 gcctgcccacttgcgcctccaacgggctgatggatcattatcctggtgttgggcatggcg 533 Query: 636 aaccgtttgccctttgcgccaccaccaaggagtatagaagctgtggatccagctatgccc 695 || || |||||||||| |||||||||||||| ||||||||| ||||| |||||||||||| Sbjct: 532 aatcgcttgccctttgtgccaccaccaaggattatagaagcagtggaaccagctatgccc 473 Query: 696 attccaatagtggatacatctgccctcaccagctgcattacatc 739 | |||||||||||| |||||||||||||| |||||||||||||| Sbjct: 472 aatccaatagtggaaacatctgccctcacgagctgcattacatc 429
>dbj|AK104396.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-C09, full insert sequence Length = 1106 Score = 492 bits (248), Expect = e-136 Identities = 410/464 (88%) Strand = Plus / Minus Query: 276 tagtatatctcatcatctgggacatccggcgtaagaaacttctgagggtccttgtacatt 335 |||||||||||||||||||||||||| || ||||| |||||||| || |||||||||| | Sbjct: 892 tagtatatctcatcatctgggacatcaggtgtaaggaacttctgtggatccttgtacagt 833 Query: 336 tcctcatagttgtatttaggtttcaccctctctggaaccggctcaagtgggatgatgctg 395 ||||| ||||||||||| || ||||||||||| || || ||||||||||||||||| ||| Sbjct: 832 tcctcgtagttgtatttcggcttcaccctctccgggacaggctcaagtgggatgatactg 773 Query: 396 tcttcgtcaatcacaccatcaatgatcccgtaatccacggcctcaagaggacccatgtat 455 ||| |||| || |||| || |||| ||||||||| || ||||||||||||||||| ||| Sbjct: 772 tctccgtcgattacactgtcgatgagcccgtaatcaacagcctcaagaggacccatatat 713 Query: 456 cggtccctatcgatgtctttctctacctgctccagtgtgcgtcccgtaaagcctgatatc 515 | ||| ||||| ||||||||||| ||||||||| | |||||||| || || |||||||| Sbjct: 712 ctgtctctatcaatgtctttctcaacctgctccggagtgcgtcctgtgaaacctgatata 653 Query: 516 agccggatgacattcctcttgctagccagaatttccttggcttggacctctacatccaag 575 ||||||||||||||||||||| ||| || || |||||||| |||||||| ||||||||| Sbjct: 652 agccggatgacattcctcttgttagtcaatatctccttggcctggacctcgacatccaag 593 Query: 576 gcctggccactcgcgcctcccacgggctgatgcatcataatcctggtgttgggcatggcg 635 ||||| ||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||| Sbjct: 592 gcctgcccacttgcgcctccaacgggctgatggatcattatcctggtgttgggcatggcg 533 Query: 636 aaccgtttgccctttgcgccaccaccaaggagtatagaagctgtggatccagctatgccc 695 || || |||||||||| |||||||||||||| ||||||||| ||||| |||||||||||| Sbjct: 532 aatcgcttgccctttgtgccaccaccaaggattatagaagcagtggaaccagctatgccc 473 Query: 696 attccaatagtggatacatctgccctcaccagctgcattacatc 739 | |||||||||||| |||||||||||||| |||||||||||||| Sbjct: 472 aatccaatagtggaaacatctgccctcacgagctgcattacatc 429
>dbj|AK065306.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002O07, full insert sequence Length = 1113 Score = 492 bits (248), Expect = e-136 Identities = 410/464 (88%) Strand = Plus / Minus Query: 276 tagtatatctcatcatctgggacatccggcgtaagaaacttctgagggtccttgtacatt 335 |||||||||||||||||||||||||| || ||||| |||||||| || |||||||||| | Sbjct: 895 tagtatatctcatcatctgggacatcaggtgtaaggaacttctgtggatccttgtacagt 836 Query: 336 tcctcatagttgtatttaggtttcaccctctctggaaccggctcaagtgggatgatgctg 395 ||||| ||||||||||| || ||||||||||| || || ||||||||||||||||| ||| Sbjct: 835 tcctcgtagttgtatttcggcttcaccctctccgggacaggctcaagtgggatgatactg 776 Query: 396 tcttcgtcaatcacaccatcaatgatcccgtaatccacggcctcaagaggacccatgtat 455 ||| |||| || |||| || |||| ||||||||| || ||||||||||||||||| ||| Sbjct: 775 tctccgtcgattacactgtcgatgagcccgtaatcaacagcctcaagaggacccatatat 716 Query: 456 cggtccctatcgatgtctttctctacctgctccagtgtgcgtcccgtaaagcctgatatc 515 | ||| ||||| ||||||||||| ||||||||| | |||||||| || || |||||||| Sbjct: 715 ctgtctctatcaatgtctttctcaacctgctccggagtgcgtcctgtgaaacctgatata 656 Query: 516 agccggatgacattcctcttgctagccagaatttccttggcttggacctctacatccaag 575 ||||||||||||||||||||| ||| || || |||||||| |||||||| ||||||||| Sbjct: 655 agccggatgacattcctcttgttagtcaatatctccttggcctggacctcgacatccaag 596 Query: 576 gcctggccactcgcgcctcccacgggctgatgcatcataatcctggtgttgggcatggcg 635 ||||| ||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||| Sbjct: 595 gcctgcccacttgcgcctccaacgggctgatggatcattatcctggtgttgggcatggcg 536 Query: 636 aaccgtttgccctttgcgccaccaccaaggagtatagaagctgtggatccagctatgccc 695 || || |||||||||| |||||||||||||| ||||||||| ||||| |||||||||||| Sbjct: 535 aatcgcttgccctttgtgccaccaccaaggattatagaagcagtggaaccagctatgccc 476 Query: 696 attccaatagtggatacatctgccctcaccagctgcattacatc 739 | |||||||||||| |||||||||||||| |||||||||||||| Sbjct: 475 aatccaatagtggaaacatctgccctcacgagctgcattacatc 432
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 492 bits (248), Expect = e-136 Identities = 410/464 (88%) Strand = Plus / Minus Query: 276 tagtatatctcatcatctgggacatccggcgtaagaaacttctgagggtccttgtacatt 335 |||||||||||||||||||||||||| || ||||| |||||||| || |||||||||| | Sbjct: 22684056 tagtatatctcatcatctgggacatcaggtgtaaggaacttctgtggatccttgtacagt 22683997 Query: 336 tcctcatagttgtatttaggtttcaccctctctggaaccggctcaagtgggatgatgctg 395 ||||| ||||||||||| || ||||||||||| || || ||||||||||||||||| ||| Sbjct: 22683996 tcctcgtagttgtatttcggcttcaccctctccgggacaggctcaagtgggatgatactg 22683937 Query: 396 tcttcgtcaatcacaccatcaatgatcccgtaatccacggcctcaagaggacccatgtat 455 ||| |||| || |||| || |||| ||||||||| || ||||||||||||||||| ||| Sbjct: 22683936 tctccgtcgattacactgtcgatgagcccgtaatcaacagcctcaagaggacccatatat 22683877 Query: 456 cggtccctatcgatgtctttctctacctgctccagtgtgcgtcccgtaaagcctgatatc 515 | ||| ||||| ||||||||||| ||||||||| | |||||||| || || |||||||| Sbjct: 22683876 ctgtctctatcaatgtctttctcaacctgctccggagtgcgtcctgtgaaacctgatata 22683817 Query: 516 agccggatgacattcctcttgctagccagaatttccttggcttggacctctacatccaag 575 ||||||||||||||||||||| ||| || || |||||||| |||||||| ||||||||| Sbjct: 22683816 agccggatgacattcctcttgttagtcaatatctccttggcctggacctcgacatccaag 22683757 Query: 576 gcctggccactcgcgcctcccacgggctgatgcatcataatcctggtgttgggcatggcg 635 ||||| ||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||| Sbjct: 22683756 gcctgcccacttgcgcctccaacgggctgatggatcattatcctggtgttgggcatggcg 22683697 Query: 636 aaccgtttgccctttgcgccaccaccaaggagtatagaagctgtggatccagctatgccc 695 || || |||||||||| |||||||||||||| ||||||||| ||||| |||||||||||| Sbjct: 22683696 aatcgcttgccctttgtgccaccaccaaggattatagaagcagtggaaccagctatgccc 22683637 Query: 696 attccaatagtggatacatctgccctcaccagctgcattacatc 739 | |||||||||||| |||||||||||||| |||||||||||||| Sbjct: 22683636 aatccaatagtggaaacatctgccctcacgagctgcattacatc 22683593
>gb|BT019171.1| Zea mays clone Contig840.F mRNA sequence Length = 1218 Score = 396 bits (200), Expect = e-107 Identities = 398/464 (85%) Strand = Plus / Plus Query: 276 tagtatatctcatcatctgggacatccggcgtaagaaacttctgagggtccttgtacatt 335 |||||||||||||||||||||||||| || |||||||||||||| || |||||||||| Sbjct: 237 tagtatatctcatcatctgggacatctggtgtaagaaacttctgtggatccttgtacagc 296 Query: 336 tcctcatagttgtatttaggtttcaccctctctggaaccggctcaagtgggatgatgctg 395 || || |||||||| ||||| ||||||||||| || || |||||||||||||| || ||| Sbjct: 297 tcttcgtagttgtacttaggcttcaccctctccgggacaggctcaagtgggataatactg 356 Query: 396 tcttcgtcaatcacaccatcaatgatcccgtaatccacggcctcaagaggacccatgtat 455 ||| | || ||||| |||||||||| || ||||| || ||||| ||||| |||||||| Sbjct: 357 tctccatcgatcacgccatcaatgagtccataatcgacagcctcgagagggcccatgtaa 416 Query: 456 cggtccctatcgatgtctttctctacctgctccagtgtgcgtcccgtaaagcctgatatc 515 || || || || |||||||||||||||||||| | ||||| || || |||||||||| Sbjct: 417 cgatctctgtcaatgtctttctctacctgctcaggagtgcgacctgtgaagcctgatacg 476 Query: 516 agccggatgacattcctcttgctagccagaatttccttggcttggacctctacatccaag 575 | ||| ||||||||||||||| | | || || ||||| ||||||||||||||||| | | Sbjct: 477 atccgaatgacattcctcttgttggtcaatatctccttcgcttggacctctacatctagg 536 Query: 576 gcctggccactcgcgcctcccacgggctgatgcatcataatcctggtgttgggcatggcg 635 ||||| ||||| || ||||| || |||||||| |||||||||||||||||||||||||| Sbjct: 537 gcctgcccacttgcacctccgacaggctgatggatcataatcctggtgttgggcatggca 596 Query: 636 aaccgtttgccctttgcgccaccaccaaggagtatagaagctgtggatccagctatgccc 695 || || |||||||| | |||||||||||||| |||||||||||| ||||||||||||||| Sbjct: 597 aatcgcttgcccttcgtgccaccaccaaggattatagaagctgttgatccagctatgccc 656 Query: 696 attccaatagtggatacatctgccctcaccagctgcattacatc 739 |||||||||||||| || ||||||||||| |||||||||||||| Sbjct: 657 attccaatagtggacacgtctgccctcacaagctgcattacatc 700
>gb|AY108536.1| Zea mays PCO126310 mRNA sequence Length = 1320 Score = 389 bits (196), Expect = e-104 Identities = 397/464 (85%) Strand = Plus / Minus Query: 276 tagtatatctcatcatctgggacatccggcgtaagaaacttctgagggtccttgtacatt 335 |||||||||||||||||||||||||| || |||||||||||||| || |||||||||| Sbjct: 990 tagtatatctcatcatctgggacatctggtgtaagaaacttctgtggatccttgtacagc 931 Query: 336 tcctcatagttgtatttaggtttcaccctctctggaaccggctcaagtgggatgatgctg 395 || || |||||||| ||||| ||||||||||| || || |||||||||||||| || ||| Sbjct: 930 tcttcgtagttgtacttaggcttcaccctctccgggacaggctcaagtgggataatactg 871 Query: 396 tcttcgtcaatcacaccatcaatgatcccgtaatccacggcctcaagaggacccatgtat 455 ||| | || ||||| |||||||||| || ||||| || ||||| ||||| |||||||| Sbjct: 870 tctccatcgatcacgccatcaatgagtccataatcgacagcctcgagagggcccatgtaa 811 Query: 456 cggtccctatcgatgtctttctctacctgctccagtgtgcgtcccgtaaagcctgatatc 515 || || || || |||||||||||||||||||| | ||||| || || |||||||||| Sbjct: 810 cgatctctgtcaatgtctttctctacctgctcaggagtgcggcctgtgaagcctgatacg 751 Query: 516 agccggatgacattcctcttgctagccagaatttccttggcttggacctctacatccaag 575 | ||| ||||||||||||||| | | || || ||||| ||||||||||||||||| | | Sbjct: 750 atccgaatgacattcctcttgttggtcaatatctccttcgcttggacctctacatctagg 691 Query: 576 gcctggccactcgcgcctcccacgggctgatgcatcataatcctggtgttgggcatggcg 635 ||||| || || || ||||| || |||||||| |||||||||||||||||||||||||| Sbjct: 690 gcctgcccgcttgcacctccgacaggctgatggatcataatcctggtgttgggcatggca 631 Query: 636 aaccgtttgccctttgcgccaccaccaaggagtatagaagctgtggatccagctatgccc 695 || || |||||||| | |||||||||||||| |||||||||||| ||||||||||||||| Sbjct: 630 aatcgcttgcccttcgtgccaccaccaaggattatagaagctgttgatccagctatgccc 571 Query: 696 attccaatagtggatacatctgccctcaccagctgcattacatc 739 |||||||||||||| || ||||||||||| |||||||||||||| Sbjct: 570 attccaatagtggacacgtctgccctcacaagctgcattacatc 527
>ref|XM_784666.1| PREDICTED: Strongylocentrotus purpuratus similar to Centromeric protein E (CENP-E protein) (LOC584818), mRNA Length = 1306 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Minus Query: 545 aatttccttggcttggacctct 566 |||||||||||||||||||||| Sbjct: 255 aatttccttggcttggacctct 234
>ref|XM_736534.1| Plasmodium chabaudi chabaudi hypothetical protein (PC105982.00.0) partial mRNA Length = 222 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 396 tcttcgtcaatcacaccatca 416 ||||||||||||||||||||| Sbjct: 50 tcttcgtcaatcacaccatca 30 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,587,494 Number of Sequences: 3902068 Number of extensions: 5587494 Number of successful extensions: 103516 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 103466 Number of HSP's gapped (non-prelim): 48 length of query: 740 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 717 effective length of database: 17,143,297,704 effective search space: 12291744453768 effective search space used: 12291744453768 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
