ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags17f21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009538.1| Triticum aestivum clone wr1.pk0144.b10:fis, full ... 846 0.0
2gb|AY105429.1| Zea mays PCO143975 mRNA sequence 283 3e-73
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 242 1e-60
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 242 1e-60
5gb|AC097280.8| Oryza sativa chromosome 3 BAC OSJNBb0111B07 genom... 242 1e-60
6dbj|AK072419.1| Oryza sativa (japonica cultivar-group) cDNA clon... 242 1e-60
7dbj|AK071474.1| Oryza sativa (japonica cultivar-group) cDNA clon... 242 1e-60
8ref|XM_463196.1| Oryza sativa (japonica cultivar-group), mRNA 240 5e-60
9gb|BT024046.1| Zea mays clone EL01N0431D03 mRNA sequence 224 3e-55
10emb|BX469888.5| Zebrafish DNA sequence from clone CH211-73C20 in... 46 0.14
11emb|AL928691.7| Zebrafish DNA sequence from clone CH211-51H20 in... 46 0.14
12emb|CR387921.7| Zebrafish DNA sequence from clone CH211-84M6 in ... 44 0.55
13gb|AC151481.4| Medicago truncatula clone mth2-3m11, complete seq... 42 2.2
14emb|AL603793.4| Mouse DNA sequence from clone RP23-131A14 on chr... 42 2.2
15dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
16dbj|AP004324.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
17emb|BX649455.14| Zebrafish DNA sequence from clone CH211-151J12 ... 42 2.2
18emb|AL672103.10| Mouse DNA sequence from clone RP23-375G11 on ch... 42 2.2
19ref|NM_119323.1| Arabidopsis thaliana unknown protein AT4G31740 ... 40 8.6
20ref|XM_640445.1| Dictyostelium discoideum ATP-specific succinyl-... 40 8.6
21gb|AY735658.1| Arabidopsis thaliana hypothetical protein AT4G317... 40 8.6
22gb|AY935268.1| Antirrhinum majus farinelli (FAR) gene, complete ... 40 8.6
23emb|AL441989.13| Human DNA sequence from clone RP11-360A18 on ch... 40 8.6
24emb|AL161728.25| Human DNA sequence from clone RP11-342C23 on ch... 40 8.6
25emb|AL160257.12| Human DNA sequence from clone RP11-77O2 on chro... 40 8.6
26emb|AL662812.12| Mouse DNA sequence from clone RP23-48A2 on chro... 40 8.6
27emb|AL161579.2|ATCHRIV75 Arabidopsis thaliana DNA chromosome 4, ... 40 8.6
28emb|AL031004.1|ATF28M20 Arabidopsis thaliana DNA chromosome 4, B... 40 8.6
29gb|AC114777.4| Homo sapiens BAC clone RP11-496D24 from 4, comple... 40 8.6
30gb|AC115594.2| Dictyostelium discoideum chromosome 2 map 4071862... 40 8.6
31dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome 40 8.6
32emb|BX293537.10| Mouse DNA sequence from clone RP23-240M8 on chr... 40 8.6
33gb|AF081854.1|AF081854 Nocomis biguttatus 12S ribosomal RNA gene... 40 8.6
34gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1... 40 8.6
35dbj|AP006644.1| Lotus japonicus genomic DNA, chromosome 3, clone... 40 8.6
36emb|AL844160.4| Mouse DNA sequence from clone RP23-340N6 on chro... 40 8.6
37gb|AC165235.11| Mus musculus chromosome 8, clone RP23-332G19, co... 40 8.6

>gb|BT009538.1| Triticum aestivum clone wr1.pk0144.b10:fis, full insert mRNA
           sequence
          Length = 2748

 Score =  846 bits (427), Expect = 0.0
 Identities = 591/641 (92%), Gaps = 14/641 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaactgatagtaggggcgttcaa-caagattctgctaacatttcacaaaagggggcaaa 59
           |||| |||| ||||||| |||||| ||||||||  |||||||||| ||||||||| ||||
Sbjct: 846 tgaattgattgtaggggtgttcaaacaagattccactaacatttctcaaaaggggccaaa 787

                                                                       
Query: 60  agnnnnnnn-gaaacaacaataaacgagcatacatggacatttcaacatattggacttct 118
           ||        ||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 786 agaaaaaaaagaaacaaaaagaaacgagcatacatggacatttcaacatattggacttct 727

                                                                       
Query: 119 agagcagttgaa-tctcgcaagaaatctttgtattgataactcattcaaagcagcgccat 177
            || |||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 726 ggaacagttgaactctggcaagaaatctttgtattgataattcattcaaagcagcgccat 667

                                                                       
Query: 178 aaatccgacaacagagaaatttgataccattacacattagtctatgcagcctggatcact 237
           ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 aaacccgacaacagggaaatttgataccattacacattagtctatgcagcctggatcact 607

                                                                       
Query: 238 ccttag---catcaagtgtcggcaagagactatttactgcaacctgtgaagcttcaa--- 291
           ||||||   ||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 606 ccttagtagcatcaagtgtcggcaagagactatttactgcaacctgtgaagcttcaacaa 547

                                                                       
Query: 292 tcccaccttagcatcaaaacatctggtaagagcatatttttactgttgtggtaggttgct 351
           ||||||||||||||||||||||||||||||||| |||||  ||||  |||||||||||||
Sbjct: 546 tcccaccttagcatcaaaacatctggtaagagcgtattt--actgcggtggtaggttgct 489

                                                                       
Query: 352 gctgcc---accacccaatcccgctttctgtcccaattctgcgagttgctgaataaattc 408
           ||||||   |||||| ||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 488 gctgccgccaccacctaatcccgctttctgtcccagttctgcgagctgctgaataaattc 429

                                                                       
Query: 409 cacaccattgagaatctctgttgctccatatatgacatgctttgaaggctgtgagcgttg 468
           ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 428 caccccattgagaatctccgttgctccatatatgacatgctttgaaggctgtgagcgctg 369

                                                                       
Query: 469 ccctagctcaactaagctcctatactcaatgtaatttccgccaccaatcatgaaaacaat 528
           ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 368 ccctagctcaactaagctcctatactcgatgtaatttccaccaccaatcatgaaaacaat 309

                                                                       
Query: 529 tgcttctctgaagggtcctctaaactgcccaccagttcctgatctaggggcccgtgggtc 588
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 308 ggcttctctgaagggtcctctaaactgcccaccagttcctgatctaggggcccgtggatc 249

                                                    
Query: 589 gaacaataggtagttgtccacctctgggtttggtttccctt 629
           ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 248 gaacagtaggtagttgtccacctctgggtttggtttccctt 208



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>gb|AY105429.1| Zea mays PCO143975 mRNA sequence
          Length = 776

 Score =  283 bits (143), Expect = 3e-73
 Identities = 254/291 (87%)
 Strand = Plus / Minus

                                                                       
Query: 339 gtggtaggttgctgctgccaccacccaatcccgctttctgtcccaattctgcgagttgct 398
           |||||| ||||||||||||||||||||| || |||||||| ||||||||||| ||||| |
Sbjct: 462 gtggtatgttgctgctgccaccacccaaccctgctttctgccccaattctgccagttggt 403

                                                                       
Query: 399 gaataaattccacaccattgagaatctctgttgctccatatatgacatgctttgaaggct 458
           ||||||| ||  | ||| | ||||| |||||||| |||||||| ||||| || |||||||
Sbjct: 402 gaataaactcggccccactaagaatttctgttgcaccatatataacatgtttggaaggct 343

                                                                       
Query: 459 gtgagcgttgccctagctcaactaagctcctatactcaatgtaatttccgccaccaatca 518
           |||||||||||  |||||| |  |||||| | ||||||||||||||||| ||||| ||||
Sbjct: 342 gtgagcgttgctttagctctatcaagctcttgtactcaatgtaatttccaccaccgatca 283

                                                                       
Query: 519 tgaaaacaattgcttctctgaagggtcctctaaactgcccaccagttcctgatctagggg 578
           |||||||||  |||||||||||||||||| |||||||||||| ||||||||| ||||| |
Sbjct: 282 tgaaaacaacggcttctctgaagggtcctttaaactgcccactagttcctgacctaggag 223

                                                              
Query: 579 cccgtgggtcgaacaataggtagttgtccacctctgggtttggtttccctt 629
           ||||||| || ||||| |||||||  |||||||||||||||||||||||||
Sbjct: 222 cccgtggatcaaacaaaaggtagtcatccacctctgggtttggtttccctt 172



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  242 bits (122), Expect = 1e-60
 Identities = 254/298 (85%)
 Strand = Plus / Plus

                                                                            
Query: 330      tttactgttgtggtaggttgctgctgccaccacccaatcccgctttctgtcccaattctg 389
                |||||||  |||| ||| |||||||| |||||||||| || |||||||| |||| |||||
Sbjct: 23353153 tttactggggtggcaggctgctgctgacaccacccaaccctgctttctgccccagttctg 23353212

                                                                            
Query: 390      cgagttgctgaataaattccacaccattgagaatctctgttgctccatatatgacatgct 449
                 ||||||||||||||| ||||| ||||| ||||| || ||||||||||||||||| ||||
Sbjct: 23353213 agagttgctgaataaactccaccccattaagaatttcagttgctccatatatgacttgct 23353272

                                                                            
Query: 450      ttgaaggctgtgagcgttgccctagctcaactaagctcctatactcaatgtaatttccgc 509
                | | || |||||| ||||||  ||||||    |||||||| || |||||||||||||| |
Sbjct: 23353273 tggtagtctgtgaacgttgcgttagctctgtcaagctcctgtattcaatgtaatttccac 23353332

                                                                            
Query: 510      caccaatcatgaaaacaattgcttctctgaagggtcctctaaactgcccaccagttcctg 569
                ||||||||||||||||||| || ||||||||||||||||| ||||| ||| |||||||||
Sbjct: 23353333 caccaatcatgaaaacaatggcctctctgaagggtcctctgaactgtccagcagttcctg 23353392

                                                                          
Query: 570      atctaggggcccgtgggtcgaacaataggtagttgtccacctctgggtttggtttccc 627
                || ||||||||||||| || || | || ||||||||| || || || |||||||||||
Sbjct: 23353393 atttaggggcccgtggatcaaatagtaagtagttgtcaacttcaggatttggtttccc 23353450



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  242 bits (122), Expect = 1e-60
 Identities = 254/298 (85%)
 Strand = Plus / Plus

                                                                            
Query: 330      tttactgttgtggtaggttgctgctgccaccacccaatcccgctttctgtcccaattctg 389
                |||||||  |||| ||| |||||||| |||||||||| || |||||||| |||| |||||
Sbjct: 23346181 tttactggggtggcaggctgctgctgacaccacccaaccctgctttctgccccagttctg 23346240

                                                                            
Query: 390      cgagttgctgaataaattccacaccattgagaatctctgttgctccatatatgacatgct 449
                 ||||||||||||||| ||||| ||||| ||||| || ||||||||||||||||| ||||
Sbjct: 23346241 agagttgctgaataaactccaccccattaagaatttcagttgctccatatatgacttgct 23346300

                                                                            
Query: 450      ttgaaggctgtgagcgttgccctagctcaactaagctcctatactcaatgtaatttccgc 509
                | | || |||||| ||||||  ||||||    |||||||| || |||||||||||||| |
Sbjct: 23346301 tggtagtctgtgaacgttgcgttagctctgtcaagctcctgtattcaatgtaatttccac 23346360

                                                                            
Query: 510      caccaatcatgaaaacaattgcttctctgaagggtcctctaaactgcccaccagttcctg 569
                ||||||||||||||||||| || ||||||||||||||||| ||||| ||| |||||||||
Sbjct: 23346361 caccaatcatgaaaacaatggcctctctgaagggtcctctgaactgtccagcagttcctg 23346420

                                                                          
Query: 570      atctaggggcccgtgggtcgaacaataggtagttgtccacctctgggtttggtttccc 627
                || ||||||||||||| || || | || ||||||||| || || || |||||||||||
Sbjct: 23346421 atttaggggcccgtggatcaaatagtaagtagttgtcaacttcaggatttggtttccc 23346478



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>gb|AC097280.8| Oryza sativa chromosome 3 BAC OSJNBb0111B07 genomic sequence, complete
             sequence
          Length = 129647

 Score =  242 bits (122), Expect = 1e-60
 Identities = 254/298 (85%)
 Strand = Plus / Plus

                                                                         
Query: 330   tttactgttgtggtaggttgctgctgccaccacccaatcccgctttctgtcccaattctg 389
             |||||||  |||| ||| |||||||| |||||||||| || |||||||| |||| |||||
Sbjct: 35809 tttactggggtggcaggctgctgctgacaccacccaaccctgctttctgccccagttctg 35868

                                                                         
Query: 390   cgagttgctgaataaattccacaccattgagaatctctgttgctccatatatgacatgct 449
              ||||||||||||||| ||||| ||||| ||||| || ||||||||||||||||| ||||
Sbjct: 35869 agagttgctgaataaactccaccccattaagaatttcagttgctccatatatgacttgct 35928

                                                                         
Query: 450   ttgaaggctgtgagcgttgccctagctcaactaagctcctatactcaatgtaatttccgc 509
             | | || |||||| ||||||  ||||||    |||||||| || |||||||||||||| |
Sbjct: 35929 tggtagtctgtgaacgttgcgttagctctgtcaagctcctgtattcaatgtaatttccac 35988

                                                                         
Query: 510   caccaatcatgaaaacaattgcttctctgaagggtcctctaaactgcccaccagttcctg 569
             ||||||||||||||||||| || ||||||||||||||||| ||||| ||| |||||||||
Sbjct: 35989 caccaatcatgaaaacaatggcctctctgaagggtcctctgaactgtccagcagttcctg 36048

                                                                       
Query: 570   atctaggggcccgtgggtcgaacaataggtagttgtccacctctgggtttggtttccc 627
             || ||||||||||||| || || | || ||||||||| || || || |||||||||||
Sbjct: 36049 atttaggggcccgtggatcaaatagtaagtagttgtcaacttcaggatttggtttccc 36106



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>dbj|AK072419.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083A08, full
            insert sequence
          Length = 1588

 Score =  242 bits (122), Expect = 1e-60
 Identities = 254/298 (85%)
 Strand = Plus / Minus

                                                                        
Query: 330  tttactgttgtggtaggttgctgctgccaccacccaatcccgctttctgtcccaattctg 389
            |||||||  |||| ||| |||||||| |||||||||| || |||||||| |||| |||||
Sbjct: 1402 tttactggggtggcaggctgctgctgacaccacccaaccctgctttctgccccagttctg 1343

                                                                        
Query: 390  cgagttgctgaataaattccacaccattgagaatctctgttgctccatatatgacatgct 449
             ||||||||||||||| ||||| ||||| ||||| || ||||||||||||||||| ||||
Sbjct: 1342 agagttgctgaataaactccaccccattaagaatttcagttgctccatatatgacttgct 1283

                                                                        
Query: 450  ttgaaggctgtgagcgttgccctagctcaactaagctcctatactcaatgtaatttccgc 509
            | | || |||||| ||||||  ||||||    |||||||| || |||||||||||||| |
Sbjct: 1282 tggtagtctgtgaacgttgcgttagctctgtcaagctcctgtattcaatgtaatttccac 1223

                                                                        
Query: 510  caccaatcatgaaaacaattgcttctctgaagggtcctctaaactgcccaccagttcctg 569
            ||||||||||||||||||| || ||||||||||||||||| ||||| ||| |||||||||
Sbjct: 1222 caccaatcatgaaaacaatggcctctctgaagggtcctctgaactgtccagcagttcctg 1163

                                                                      
Query: 570  atctaggggcccgtgggtcgaacaataggtagttgtccacctctgggtttggtttccc 627
            || ||||||||||||| || || | || ||||||||| || || || |||||||||||
Sbjct: 1162 atttaggggcccgtggatcaaatagtaagtagttgtcaacttcaggatttggtttccc 1105



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>dbj|AK071474.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023097B21, full
            insert sequence
          Length = 2066

 Score =  242 bits (122), Expect = 1e-60
 Identities = 254/298 (85%)
 Strand = Plus / Minus

                                                                        
Query: 330  tttactgttgtggtaggttgctgctgccaccacccaatcccgctttctgtcccaattctg 389
            |||||||  |||| ||| |||||||| |||||||||| || |||||||| |||| |||||
Sbjct: 1942 tttactggggtggcaggctgctgctgacaccacccaaccctgctttctgccccagttctg 1883

                                                                        
Query: 390  cgagttgctgaataaattccacaccattgagaatctctgttgctccatatatgacatgct 449
             ||||||||||||||| ||||| ||||| ||||| || ||||||||||||||||| ||||
Sbjct: 1882 agagttgctgaataaactccaccccattaagaatttcagttgctccatatatgacttgct 1823

                                                                        
Query: 450  ttgaaggctgtgagcgttgccctagctcaactaagctcctatactcaatgtaatttccgc 509
            | | || |||||| ||||||  ||||||    |||||||| || |||||||||||||| |
Sbjct: 1822 tggtagtctgtgaacgttgcgttagctctgtcaagctcctgtattcaatgtaatttccac 1763

                                                                        
Query: 510  caccaatcatgaaaacaattgcttctctgaagggtcctctaaactgcccaccagttcctg 569
            ||||||||||||||||||| || ||||||||||||||||| ||||| ||| |||||||||
Sbjct: 1762 caccaatcatgaaaacaatggcctctctgaagggtcctctgaactgtccagcagttcctg 1703

                                                                      
Query: 570  atctaggggcccgtgggtcgaacaataggtagttgtccacctctgggtttggtttccc 627
            || ||||||||||||| || || | || ||||||||| || || || |||||||||||
Sbjct: 1702 atttaggggcccgtggatcaaatagtaagtagttgtcaacttcaggatttggtttccc 1645



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>ref|XM_463196.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1872

 Score =  240 bits (121), Expect = 5e-60
 Identities = 247/289 (85%)
 Strand = Plus / Minus

                                                                        
Query: 339  gtggtaggttgctgctgccaccacccaatcccgctttctgtcccaattctgcgagttgct 398
            |||| ||| |||||||| |||||||||| || |||||||| |||| ||||| ||||||||
Sbjct: 1864 gtggcaggctgctgctgacaccacccaaccctgctttctgccccagttctgagagttgct 1805

                                                                        
Query: 399  gaataaattccacaccattgagaatctctgttgctccatatatgacatgctttgaaggct 458
            ||||||| ||||| ||||| ||||| || ||||||||||||||||| ||||| | || ||
Sbjct: 1804 gaataaactccaccccattaagaatttcagttgctccatatatgacttgcttggtagtct 1745

                                                                        
Query: 459  gtgagcgttgccctagctcaactaagctcctatactcaatgtaatttccgccaccaatca 518
            |||| ||||||  ||||||    |||||||| || |||||||||||||| ||||||||||
Sbjct: 1744 gtgaacgttgcgttagctctgtcaagctcctgtattcaatgtaatttccaccaccaatca 1685

                                                                        
Query: 519  tgaaaacaattgcttctctgaagggtcctctaaactgcccaccagttcctgatctagggg 578
            |||||||||| || ||||||||||||||||| ||||| ||| ||||||||||| ||||||
Sbjct: 1684 tgaaaacaatggcctctctgaagggtcctctgaactgtccagcagttcctgatttagggg 1625

                                                             
Query: 579  cccgtgggtcgaacaataggtagttgtccacctctgggtttggtttccc 627
            ||||||| || || | || ||||||||| || || || |||||||||||
Sbjct: 1624 cccgtggatcaaatagtaagtagttgtcaacttcaggatttggtttccc 1576



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>gb|BT024046.1| Zea mays clone EL01N0431D03 mRNA sequence
          Length = 2180

 Score =  224 bits (113), Expect = 3e-55
 Identities = 246/289 (85%), Gaps = 1/289 (0%)
 Strand = Plus / Minus

                                                                        
Query: 341  ggtaggttgctgctgccaccacccaatcccgctttctgtcccaattctgcgagttgctga 400
            |||| ||||||| ||||||||||||| || | |||||| ||||||||||| || ||  ||
Sbjct: 1802 ggtatgttgctggtgccaccacccaaccctggtttctgccccaattctgccaggtgggga 1743

                                                                        
Query: 401  ataaattccacaccattgagaatctctgttgctccatatatgacatgctttgaaggctgt 460
            ||||| ||  | ||| | ||||| |||| ||| |||||||| ||||| || ||||| |||
Sbjct: 1742 ataaactcggccccactaagaatttctggtgcaccatatataacatgtttggaagggtgt 1683

                                                                        
Query: 461  gagcgttgccctagctcaactaagctcctatactcaatgtaatttccgccaccaatcatg 520
            |||||||||  |||||| | | ||||| | ||||||||||||||||| ||||| ||||||
Sbjct: 1682 gagcgttgctttagctcta-tcagctcttgtactcaatgtaatttccaccaccgatcatg 1624

                                                                        
Query: 521  aaaacaattgcttctctgaagggtcctctaaactgcccaccagttcctgatctaggggcc 580
            |||||||  |||||||||||||||||| |||||||||||| ||||||||| ||||| |||
Sbjct: 1623 aaaacaacggcttctctgaagggtcctttaaactgcccactagttcctgacctaggagcc 1564

                                                             
Query: 581  cgtgggtcgaacaataggtagttgtccacctctgggtttggtttccctt 629
            ||||| || ||||| |||||||  |||||||||||||||||||||||||
Sbjct: 1563 cgtggatcaaacaaaaggtagtcatccacctctgggtttggtttccctt 1515



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>emb|BX469888.5| Zebrafish DNA sequence from clone CH211-73C20 in linkage group 14,
             complete sequence
          Length = 188432

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 482   aagctcctatactcaatgtaatt 504
             |||||||||||||||||||||||
Sbjct: 17998 aagctcctatactcaatgtaatt 18020



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>emb|AL928691.7| Zebrafish DNA sequence from clone CH211-51H20 in linkage group 14,
             complete sequence
          Length = 167320

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 482   aagctcctatactcaatgtaatt 504
             |||||||||||||||||||||||
Sbjct: 22407 aagctcctatactcaatgtaatt 22385



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>emb|CR387921.7| Zebrafish DNA sequence from clone CH211-84M6 in linkage group 17,
              complete sequence
          Length = 187568

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 85     agcatacatggacatttcaaca 106
              ||||||||||||||||||||||
Sbjct: 142762 agcatacatggacatttcaaca 142741



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>gb|AC151481.4| Medicago truncatula clone mth2-3m11, complete sequence
          Length = 99012

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 519   tgaaaacaattgcttctctga 539
             |||||||||||||||||||||
Sbjct: 53544 tgaaaacaattgcttctctga 53524



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>emb|AL603793.4| Mouse DNA sequence from clone RP23-131A14 on chromosome 11, complete
              sequence
          Length = 201815

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 291    atcccaccttagcatcaaaac 311
              |||||||||||||||||||||
Sbjct: 183832 atcccaccttagcatcaaaac 183852



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 121      agcagttgaatctcgcaagaa 141
                |||||||||||||||||||||
Sbjct: 29207919 agcagttgaatctcgcaagaa 29207899



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>dbj|AP004324.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1215_E11
          Length = 105301

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 121   agcagttgaatctcgcaagaa 141
             |||||||||||||||||||||
Sbjct: 75206 agcagttgaatctcgcaagaa 75186



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>emb|BX649455.14| Zebrafish DNA sequence from clone CH211-151J12 in linkage group 4,
             complete sequence
          Length = 116689

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 318   taagagcatatttttactgtt 338
             |||||||||||||||||||||
Sbjct: 53858 taagagcatatttttactgtt 53838



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>emb|AL672103.10| Mouse DNA sequence from clone RP23-375G11 on chromosome X, complete
              sequence
          Length = 196568

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 41     tttcacaaaagggggcaaaag 61
              |||||||||||||||||||||
Sbjct: 138709 tttcacaaaagggggcaaaag 138689



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>ref|NM_119323.1| Arabidopsis thaliana unknown protein AT4G31740 mRNA, complete cds
          Length = 516

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                           
Query: 488 ctatactcaatgtaatttccgccaccaatcatgaaaacaattgcttct 535
           ||||| |||||||| || || |||||||||||||| || || ||||||
Sbjct: 386 ctatattcaatgtagttacctccaccaatcatgaagactatggcttct 339



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>ref|XM_640445.1| Dictyostelium discoideum ATP-specific succinyl-CoA synthetase subunit
            beta (DDB0231357), partial mRNA
          Length = 1338

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 150  attgataactcattcaaagcagcg 173
            ||||||||||| ||||||||||||
Sbjct: 1145 attgataactccttcaaagcagcg 1122



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>gb|AY735658.1| Arabidopsis thaliana hypothetical protein AT4G31740 mRNA, complete
           cds
          Length = 765

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                           
Query: 488 ctatactcaatgtaatttccgccaccaatcatgaaaacaattgcttct 535
           ||||| |||||||| || || |||||||||||||| || || ||||||
Sbjct: 458 ctatattcaatgtagttacctccaccaatcatgaagactatggcttct 411



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>gb|AY935268.1| Antirrhinum majus farinelli (FAR) gene, complete sequence
          Length = 54307

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 409   cacaccattgagaatctctg 428
             ||||||||||||||||||||
Sbjct: 20771 cacaccattgagaatctctg 20752



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>emb|AL441989.13| Human DNA sequence from clone RP11-360A18 on chromosome 9 Contains a
             novel gene, complete sequence
          Length = 105068

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 29    attctgctaacatttcacaa 48
             ||||||||||||||||||||
Sbjct: 66439 attctgctaacatttcacaa 66420



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>emb|AL161728.25| Human DNA sequence from clone RP11-342C23 on chromosome 9 Contains the
             FBP1 gene for Fructose-1,6-bisphosphatase 1, a novel gene,
             the FBP2 gene for Fructose-1,6-bisphosphatase 2, a  gene
             for a putative novel protein and one CpG island, complete
             sequence
          Length = 170532

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 552   actgcccaccagttcctgatctag 575
             |||||||||||||||||| |||||
Sbjct: 37008 actgcccaccagttcctgctctag 37031



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>emb|AL160257.12| Human DNA sequence from clone RP11-77O2 on chromosome 13, complete
             sequence
          Length = 62107

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 310   acatctggtaagagcatatt 329
             ||||||||||||||||||||
Sbjct: 41068 acatctggtaagagcatatt 41087



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>emb|AL662812.12| Mouse DNA sequence from clone RP23-48A2 on chromosome 11 Contains the
              gene for a novel protein similar to smoothelin Smtn, three
              novel genes, the Mybbp1a gene for MYB binding protein
              (P160) 1a, a ribosomal protein 7a (Rpl7a) pseudogene, the
              5' end of the Ube2g1 gene for ubiquitin-conjugating enzyme
              E2G 1 (UBC7 homolog, C. elegans) and four CpG islands,
              complete sequence
          Length = 258521

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 346    gttgctgctgccaccaccca 365
              ||||||||||||||||||||
Sbjct: 251375 gttgctgctgccaccaccca 251356



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>emb|AL161579.2|ATCHRIV75 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 75
          Length = 196242

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                              
Query: 488    ctatactcaatgtaatttccgccaccaatcatgaaaacaattgcttct 535
              ||||| |||||||| || || |||||||||||||| || || ||||||
Sbjct: 130163 ctatattcaatgtagttacctccaccaatcatgaagactatggcttct 130116



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>emb|AL031004.1|ATF28M20 Arabidopsis thaliana DNA chromosome 4, BAC clone F28M20 (ESSAII
             project)
          Length = 90902

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                             
Query: 488   ctatactcaatgtaatttccgccaccaatcatgaaaacaattgcttct 535
             ||||| |||||||| || || |||||||||||||| || || ||||||
Sbjct: 23108 ctatattcaatgtagttacctccaccaatcatgaagactatggcttct 23155



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>gb|AC114777.4| Homo sapiens BAC clone RP11-496D24 from 4, complete sequence
          Length = 52417

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 347   ttgctgctgccaccacccaa 366
             ||||||||||||||||||||
Sbjct: 35194 ttgctgctgccaccacccaa 35175



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>gb|AC115594.2| Dictyostelium discoideum chromosome 2 map 4071862-4101005 strain AX4,
             complete sequence
          Length = 29143

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 150   attgataactcattcaaagcagcg 173
             ||||||||||| ||||||||||||
Sbjct: 19246 attgataactccttcaaagcagcg 19223



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>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome
          Length = 6413771

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 394     ttgctgaataaattccacac 413
               ||||||||||||||||||||
Sbjct: 4726152 ttgctgaataaattccacac 4726133



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>emb|BX293537.10| Mouse DNA sequence from clone RP23-240M8 on chromosome X, complete
              sequence
          Length = 163726

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 359    ccacccaatcccgctttctg 378
              ||||||||||||||||||||
Sbjct: 143792 ccacccaatcccgctttctg 143773



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>gb|AF081854.1|AF081854 Nocomis biguttatus 12S ribosomal RNA gene, partial sequence; tRNA-Val
            gene, complete sequence; and 16S ribosomal RNA gene,
            partial sequence, mitochondrial genes for mitochondrial
            RNAs
          Length = 1895

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 485  ctcctatactcaatgtaatt 504
            ||||||||||||||||||||
Sbjct: 1166 ctcctatactcaatgtaatt 1147



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>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome
          Length = 1751080

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 147    tgtattgataactcattcaa 166
              ||||||||||||||||||||
Sbjct: 241689 tgtattgataactcattcaa 241670



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>dbj|AP006644.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT06I23, TM0253,
             complete sequence
          Length = 85813

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 436   atatatgacatgctttgaag 455
             ||||||||||||||||||||
Sbjct: 80610 atatatgacatgctttgaag 80629



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>emb|AL844160.4| Mouse DNA sequence from clone RP23-340N6 on chromosome 4, complete
             sequence
          Length = 207022

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 27    agattctgctaacatttcacaaaa 50
             |||||||||||||||||| |||||
Sbjct: 64850 agattctgctaacatttctcaaaa 64827



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>gb|AC165235.11| Mus musculus chromosome 8, clone RP23-332G19, complete sequence
          Length = 220008

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 140   aaatctttgtattgataactcatt 163
             ||||||||||||| ||||||||||
Sbjct: 62554 aaatctttgtatttataactcatt 62577


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,438,597
Number of Sequences: 3902068
Number of extensions: 5438597
Number of successful extensions: 99351
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99119
Number of HSP's gapped (non-prelim): 219
length of query: 629
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 606
effective length of database: 17,143,297,704
effective search space: 10388838408624
effective search space used: 10388838408624
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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