>Y076_SYNY3 (Q55792) Hypothetical UPF0051 protein slr0076|
          Length = 453

 Score = 86.3 bits (212), Expect = 9e-17
 Identities = 44/106 (41%), Positives = 70/106 (66%)
 Frame = -3

Query: 711 DKLHKLIACGTGNGIFDGNIQVNRYAQQTDAGQQTKCLLLSPKAVVNVKPNLQIIADDVK 532
           ++LHK I       +F G + V + AQ T+A Q  + L+LS KA +N KP LQI AD+VK
Sbjct: 332 NQLHKCIVDEYAQAVFSGKVLVPQAAQLTNAQQLNRNLVLSSKARINTKPELQITADNVK 391

Query: 531 CTHGAAISGELDPNELFYFQARGVDANTATDALLFSFGAQVINRIP 394
           C+HGA IS +L+ +E+FY ++RG++   A   L+ +F  +++++IP
Sbjct: 392 CSHGATIS-QLEADEVFYLRSRGLNDYDARHLLIDAFAGEILDQIP 436

>SUFD_ECOLI (P77689) Protein sufD|
          Length = 423

 Score = 81.6 bits (200), Expect = 2e-15
 Identities = 38/100 (38%), Positives = 62/100 (62%)
 Frame = -3

Query: 708 KLHKLIACGTGNGIFDGNIQVNRYAQQTDAGQQTKCLLLSPKAVVNVKPNLQIIADDVKC 529
           +LHK I    G  +F+G I V ++A +TD       LL+   A V+ KP L+I ADDVKC
Sbjct: 299 QLHKTIVSDKGRAVFNGLINVAQHAIKTDGQMTNNNLLMGKLAEVDTKPQLEIYADDVKC 358

Query: 528 THGAAISGELDPNELFYFQARGVDANTATDALLFSFGAQV 409
           +HGA + G +D  ++FY ++RG++   A   ++++F A++
Sbjct: 359 SHGATV-GRIDDEQIFYLRSRGINQQDAQQMIIYAFAAEL 397

>Y074_SYNY3 (Q55790) Hypothetical UPF0051 protein slr0074|
          Length = 480

 Score = 48.1 bits (113), Expect = 3e-05
 Identities = 28/104 (26%), Positives = 49/104 (47%)
 Frame = -3

Query: 705 LHKLIACGTGNGIFDGNIQVNRYAQQTDAGQQTKCLLLSPKAVVNVKPNLQIIADDVKCT 526
           + K I+ G     + G +++   AQ      Q   +L+  +A  N  P +Q+  +  K  
Sbjct: 358 ISKGISAGNSANSYRGLVKMGPKAQGARNYSQCDSMLIGDRAAANTFPYIQVDNNTAKVE 417

Query: 525 HGAAISGELDPNELFYFQARGVDANTATDALLFSFGAQVINRIP 394
           H A+ S ++  ++LFYF  RG+    A   L+  F   V+N +P
Sbjct: 418 HEASTS-KIGEDQLFYFAQRGISEEDAVSMLVSGFCKDVLNELP 460

>YCF24_CYACA (Q9TLX2) Hypothetical UPF0051 protein ycf24|
          Length = 483

 Score = 47.4 bits (111), Expect = 5e-05
 Identities = 28/104 (26%), Positives = 50/104 (48%)
 Frame = -3

Query: 705 LHKLIACGTGNGIFDGNIQVNRYAQQTDAGQQTKCLLLSPKAVVNVKPNLQIIADDVKCT 526
           + K I+ G     + G ++++  A  +D   Q   LL+   +  N  PNL +     K  
Sbjct: 361 ISKGISGGVSKNTYRGLVKISGSAIYSDNRSQCDSLLIGKGSESNTYPNLHVHNSLSKVE 420

Query: 525 HGAAISGELDPNELFYFQARGVDANTATDALLFSFGAQVINRIP 394
           H A +S  +   ++FYFQ RG++   A + ++  F   V N++P
Sbjct: 421 HEAFVS-RIGEEQIFYFQQRGINIEEALNMIVSGFCQDVCNKLP 463

>Y1385_PYRHO (O50093) Hypothetical UPF0051 protein PH1385|
          Length = 446

 Score = 46.2 bits (108), Expect = 1e-04
 Identities = 27/81 (33%), Positives = 42/81 (51%)
 Frame = -3

Query: 636 AQQTDAGQQTKCLLLSPKAVVNVKPNLQIIADDVKCTHGAAISGELDPNELFYFQARGVD 457
           A++T        LLLS KA +   P L  + D+ + +H AAI G++   ELFY  +RG+ 
Sbjct: 348 AKKTKGHISCDALLLSDKARMETYPGLVSLVDEAELSHEAAI-GKIKEEELFYLMSRGLS 406

Query: 456 ANTATDALLFSFGAQVINRIP 394
              AT  ++  F   ++  IP
Sbjct: 407 EEKATQLIVKGFVEPMLKDIP 427

>Y594_MYCLE (Q49682) Hypothetical UPF0051 protein ML0594|
          Length = 392

 Score = 46.2 bits (108), Expect = 1e-04
 Identities = 24/91 (26%), Positives = 49/91 (53%)
 Frame = -3

Query: 669 IFDGNIQVNRYAQQTDAGQQTKCLLLSPKAVVNVKPNLQIIADDVKCTHGAAISGELDPN 490
           ++ G++ ++  A  TD  +  + L+L+     +  PNL+I  D++     A+ +G  D  
Sbjct: 275 VWVGDVLIHPEATGTDTFEVNRNLVLTNGVRADSVPNLEIETDEIVGAGHASATGRFDDE 334

Query: 489 ELFYFQARGVDANTATDALLFSFGAQVINRI 397
           +LFY ++RG+    A   L+  F  ++I++I
Sbjct: 335 QLFYLRSRGIGEEQARRLLVRGFFGEIISKI 365

>YCF24_CYAPA (P48260) Hypothetical UPF0051 protein ycf24|
          Length = 486

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 28/104 (26%), Positives = 48/104 (46%)
 Frame = -3

Query: 705 LHKLIACGTGNGIFDGNIQVNRYAQQTDAGQQTKCLLLSPKAVVNVKPNLQIIADDVKCT 526
           + K I+ G     + G +++   A       Q   LL+   +  N  P+LQI     K  
Sbjct: 364 ISKGISAGHSQNSYRGLVKIGPKAVGARNYSQCDSLLIGDNSQANTFPHLQIKNPTAKVE 423

Query: 525 HGAAISGELDPNELFYFQARGVDANTATDALLFSFGAQVINRIP 394
           H A+ S ++   ++FYF  RG++A  A   ++  F  +V N +P
Sbjct: 424 HEASTS-KIGEEQIFYFLQRGINAEEAISLIISGFCREVFNNLP 466

>Y1496_MYCBO (P67126) Hypothetical UPF0051 protein Mb1496 [Contains: Endonuclease|
            PI-MtuHIIP (EC 3.1.-.-) (Mtu pps1 intein)]
          Length = 846

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 28/102 (27%), Positives = 50/102 (49%)
 Frame = -3

Query: 699  KLIACGTGNGIFDGNIQVNRYAQQTDAGQQTKCLLLSPKAVVNVKPNLQIIADDVKCTHG 520
            K +A G G   + G +QVN+ A  + +  +   LL+   +  +  P + I  DDV   H 
Sbjct: 726  KSVARGGGRTSYRGLVQVNKGAHGSRSSVKCDALLVDTVSRSDTYPYVDIREDDVTMGHE 785

Query: 519  AAISGELDPNELFYFQARGVDANTATDALLFSFGAQVINRIP 394
            A +S ++  N+LFY  +RG+  + A   ++  F   +   +P
Sbjct: 786  ATVS-KVSENQLFYLMSRGLTEDEAMAMVVRGFVEPIAKELP 826

>Y1461_MYCTU (P67125) Hypothetical UPF0051 protein Rv1461/MT1508 [Contains:|
            Endonuclease PI-MtuHIIP (EC 3.1.-.-) (Mtu pps1 intein)]
          Length = 846

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 28/102 (27%), Positives = 50/102 (49%)
 Frame = -3

Query: 699  KLIACGTGNGIFDGNIQVNRYAQQTDAGQQTKCLLLSPKAVVNVKPNLQIIADDVKCTHG 520
            K +A G G   + G +QVN+ A  + +  +   LL+   +  +  P + I  DDV   H 
Sbjct: 726  KSVARGGGRTSYRGLVQVNKGAHGSRSSVKCDALLVDTVSRSDTYPYVDIREDDVTMGHE 785

Query: 519  AAISGELDPNELFYFQARGVDANTATDALLFSFGAQVINRIP 394
            A +S ++  N+LFY  +RG+  + A   ++  F   +   +P
Sbjct: 786  ATVS-KVSENQLFYLMSRGLTEDEAMAMVVRGFVEPIAKELP 826

>YCF24_GUITH (O78473) Hypothetical UPF0051 protein ycf24|
          Length = 483

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 26/104 (25%), Positives = 48/104 (46%)
 Frame = -3

Query: 705 LHKLIACGTGNGIFDGNIQVNRYAQQTDAGQQTKCLLLSPKAVVNVKPNLQIIADDVKCT 526
           + K I+ G     + G +++N  A  +    Q   +L+ P +  N  P +Q+     +  
Sbjct: 361 ISKGISAGYSKNTYRGQVKININALGSINNSQCDSMLIGPYSQANTYPYIQVSNAMSRVE 420

Query: 525 HGAAISGELDPNELFYFQARGVDANTATDALLFSFGAQVINRIP 394
           H A+ S +++  +LFYF  RG+    A   L+  F   V  ++P
Sbjct: 421 HEASTS-KIEEEQLFYFLQRGISVEQAISLLISGFCRDVFVKLP 463

>Y593_MYCLE (Q49689) Hypothetical UPF0051 protein ML0593 [Contains: Mle pps1|
            intein]
          Length = 869

 Score = 44.3 bits (103), Expect = 4e-04
 Identities = 28/102 (27%), Positives = 50/102 (49%)
 Frame = -3

Query: 699  KLIACGTGNGIFDGNIQVNRYAQQTDAGQQTKCLLLSPKAVVNVKPNLQIIADDVKCTHG 520
            K +A G G   + G +QVN+ A  + +  +   LL+   +  +  P + I  DDV   H 
Sbjct: 749  KSVARGGGRTSYRGLVQVNKGAHGSRSSVKCDALLVDTISRSDTYPYVDIREDDVTMGHE 808

Query: 519  AAISGELDPNELFYFQARGVDANTATDALLFSFGAQVINRIP 394
            A +S ++  N+LFY  +RG+  + A   ++  F   +   +P
Sbjct: 809  ATVS-KVSENQLFYLMSRGLAEDEAMAMVVRGFVEPIAKELP 849

>YCF24_ANTSP (Q02857) Hypothetical UPF0051 protein in atpA 3'region (ORF 3)|
           (Fragment)
          Length = 297

 Score = 43.5 bits (101), Expect = 7e-04
 Identities = 28/104 (26%), Positives = 48/104 (46%)
 Frame = -3

Query: 705 LHKLIACGTGNGIFDGNIQVNRYAQQTDAGQQTKCLLLSPKAVVNVKPNLQIIADDVKCT 526
           L K I+ G     + G +++   A  +    Q   LLLS  +  N  P +Q      K  
Sbjct: 175 LSKGISAGYSANSYRGLVKIGPKAHYSRNYSQCDSLLLSNTSKANTFPYIQAQNPYTKIE 234

Query: 525 HGAAISGELDPNELFYFQARGVDANTATDALLFSFGAQVINRIP 394
           H A+ S ++   ++FYF  RG++   A   ++  F  +V+N +P
Sbjct: 235 HEASTS-KIGEEQIFYFLQRGINLENAISLMISGFCKEVLNELP 277

>Y1497_MYCBO (P59973) Hypothetical UPF0051 protein Mb1497|
          Length = 397

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 23/91 (25%), Positives = 47/91 (51%)
 Frame = -3

Query: 669 IFDGNIQVNRYAQQTDAGQQTKCLLLSPKAVVNVKPNLQIIADDVKCTHGAAISGELDPN 490
           ++ G++ +   A  TD  +  + L+L+  A  +  PNL+I   ++     A+ +G  D  
Sbjct: 278 VWVGDVLIRAQATGTDTFEVNRNLVLTDGARADSVPNLEIETGEIVGAGHASATGRFDDE 337

Query: 489 ELFYFQARGVDANTATDALLFSFGAQVINRI 397
           +LFY ++RG+    A   ++  F  ++I +I
Sbjct: 338 QLFYLRSRGIPEAQARRLVVRGFFGEIIAKI 368

>Y1462_MYCTU (O53153) Hypothetical UPF0051 protein Rv1462/MT1509|
          Length = 397

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 23/91 (25%), Positives = 47/91 (51%)
 Frame = -3

Query: 669 IFDGNIQVNRYAQQTDAGQQTKCLLLSPKAVVNVKPNLQIIADDVKCTHGAAISGELDPN 490
           ++ G++ +   A  TD  +  + L+L+  A  +  PNL+I   ++     A+ +G  D  
Sbjct: 278 VWVGDVLIRAQATGTDTFEVNRNLVLTDGARADSVPNLEIETGEIVGAGHASATGRFDDE 337

Query: 489 ELFYFQARGVDANTATDALLFSFGAQVINRI 397
           +LFY ++RG+    A   ++  F  ++I +I
Sbjct: 338 QLFYLRSRGIPEAQARRLVVRGFFGEIIAKI 368

>YCF24_GALSU (P35912) Hypothetical UPF0051 protein in atpA 3'region (ORF X)|
           (Fragment)
          Length = 221

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
 Frame = -3

Query: 699 KLIACG--TGNGI--FDGNIQVNRYAQQTDAGQQTKCLLLSPKAVVNVKPNLQIIADDVK 532
           K+I+ G  TGN I  + G ++V+  A +     Q   LL+   +  N  P +++      
Sbjct: 97  KIISKGISTGNSINSYRGKVKVSLNASRARNYSQCDSLLIGNSSEANTFPYIEVYNRSSI 156

Query: 531 CTHGAAISGELDPNELFYFQARGVDANTATDALLFSFGAQVINRIP 394
             H A+IS +++  +LFYF  RG+    A   ++  F  +V   +P
Sbjct: 157 IEHEASIS-KINEEKLFYFMQRGISIEEAISLIVSGFCKEVFTELP 201

>YCF24_PORPU (P51240) Hypothetical UPF0051 protein ycf24 (ORF487)|
          Length = 487

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 23/104 (22%), Positives = 47/104 (45%)
 Frame = -3

Query: 705 LHKLIACGTGNGIFDGNIQVNRYAQQTDAGQQTKCLLLSPKAVVNVKPNLQIIADDVKCT 526
           + K I+ G     + G +++   +  +    Q   LL+   +  N  P +Q+     K  
Sbjct: 365 ISKGISAGKSKNSYRGLVKIGPQSFNSRNYSQCDSLLIGQSSQANTFPYIQVQNPTAKVE 424

Query: 525 HGAAISGELDPNELFYFQARGVDANTATDALLFSFGAQVINRIP 394
           H A+ S ++  +++FYF  RG++   +   ++  F   V N +P
Sbjct: 425 HEASTS-KISEDQIFYFLQRGINLEESVSLMISGFCKDVFNELP 467

>Y2365_ARCFU (O30305) Hypothetical UPF0051 protein AF2365|
          Length = 369

 Score = 36.2 bits (82), Expect = 0.11
 Identities = 21/73 (28%), Positives = 39/73 (53%)
 Frame = -3

Query: 612 QTKCLLLSPKAVVNVKPNLQIIADDVKCTHGAAISGELDPNELFYFQARGVDANTATDAL 433
           + K L+LS   +++  P L+    +V+ +H AAI G++    +FY  +RG+  + A  A+
Sbjct: 279 ECKGLMLSESGLIDAIPELEARYPNVELSHEAAI-GKIAEEGIFYLMSRGLSRDEAISAI 337

Query: 432 LFSFGAQVINRIP 394
           +  F    I  +P
Sbjct: 338 VRGFMEIEIKGLP 350

>CXA3_HUMAN (Q9Y6H8) Gap junction alpha-3 protein (Connexin-46) (Cx46)|
          Length = 434

 Score = 35.4 bits (80), Expect = 0.19
 Identities = 20/35 (57%), Positives = 25/35 (71%)
 Frame = +1

Query: 364 C*SLLLDGLKWNAVYHLGSKREKQGVGRRVGVDAS 468
           C SLLL+ L+   +YHLG K+ KQGV  R+G DAS
Sbjct: 211 CASLLLNMLE---IYHLGWKKLKQGVTSRLGPDAS 242

>YCF24_ODOSI (P49530) Hypothetical UPF0051 protein ycf24 (ORF486)|
          Length = 486

 Score = 35.4 bits (80), Expect = 0.19
 Identities = 22/102 (21%), Positives = 42/102 (41%)
 Frame = -3

Query: 699 KLIACGTGNGIFDGNIQVNRYAQQTDAGQQTKCLLLSPKAVVNVKPNLQIIADDVKCTHG 520
           K I+ G     + G + ++  A       Q   LL+   +  N  P + +     K  H 
Sbjct: 366 KGISAGNSKNTYRGLVNISNKAIGARNYSQCDSLLIGNLSNANTFPFISVQNPTAKIEHE 425

Query: 519 AAISGELDPNELFYFQARGVDANTATDALLFSFGAQVINRIP 394
           A+ S ++   ++FYF  RG+      + ++  F  +V   +P
Sbjct: 426 ASTS-KIGEEQIFYFLQRGIPIEKGVELMISGFCQEVFTELP 466

>YQ21_CAEEL (Q09231) Hypothetical protein C09F5.1|
          Length = 571

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +3

Query: 138 FTNNKQNLKRLEWYFLRQTINIRSSSRSPC---SVPKLPIVPAQLFPPQHKKSVEPLQRF 308
           FT    + +  +WY LRQT++ R +S S C    +P   +V  + +  +    V  L  F
Sbjct: 449 FTEEIDDCEGAQWYLLRQTVHARDASCSECYDFCLPDWAVVRKEKYEDESTLGVRRLNCF 508

>SSP1_NEUCR (O60045) Peptidyl-prolyl cis-trans isomerase ssp-1 (EC 5.2.1.8)|
           (PPIase ssp1)
          Length = 186

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = +3

Query: 162 KRLEWYFLRQTINIRSSSRSPCSVPKLPIVPAQLFPPQHKKSVEPLQRFPQGLINC 329
           K L +YF   T   R    S   V KL I  A+   P  ++  +  Q+ PQG I C
Sbjct: 19  KNLPYYFNSATKTSRWEPPSGTDVDKLKIYMAKYHSPTSQQQQQQQQQQPQGKIRC 74


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,816,390
Number of Sequences: 219361
Number of extensions: 1856301
Number of successful extensions: 4446
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 4303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4440
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7932903580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)