ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags17f20 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_549999.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1696 Score = 196 bits (99), Expect = 7e-47 Identities = 199/231 (86%), Gaps = 1/231 (0%) Strand = Plus / Minus Query: 509 ctgatggcagctccatgcgtgcatttgacatcgtcagcgatgatctgaaggtttggcttc 568 ||||||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||| Sbjct: 1289 ctgatggcagctccatgtgtacatttgacatcatcagcaatgatctgaaggtttggcttc 1230 Query: 569 acattcacgacagcctttggtgagagcagaagacacttggtttgttgccctgcatcggtt 628 ||||| || | ||||| | ||| || |||||||||||||||| ||||||||| || ||| Sbjct: 1229 acattaacaagtgccttcgatgacaggagaagacacttggtttcttgccctgcgtcagtt 1170 Query: 629 tgctgtgcatacctgttgacttgaatatttccatcaaaaataccatttcctgtaccacaa 688 || |||||||| ||||| |||| |||||||||||||| || ||||| ||||||||| || Sbjct: 1169 tgttgtgcatatctgttcactttgatatttccatcaaatatgccattccctgtaccagaa 1110 Query: 689 gcaatcaatttgtggagcttgtcgtgaaaaacctcttgggtgatcaagtat 739 ||||||||| | || | | ||| ||||| ||||||||||||||||||||| Sbjct: 1109 gcaatcaatctatgtatc-tgttgtgaacgacctcttgggtgatcaagtat 1060
>dbj|AK068846.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013162I04, full insert sequence Length = 1696 Score = 196 bits (99), Expect = 7e-47 Identities = 199/231 (86%), Gaps = 1/231 (0%) Strand = Plus / Minus Query: 509 ctgatggcagctccatgcgtgcatttgacatcgtcagcgatgatctgaaggtttggcttc 568 ||||||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||| Sbjct: 1289 ctgatggcagctccatgtgtacatttgacatcatcagcaatgatctgaaggtttggcttc 1230 Query: 569 acattcacgacagcctttggtgagagcagaagacacttggtttgttgccctgcatcggtt 628 ||||| || | ||||| | ||| || |||||||||||||||| ||||||||| || ||| Sbjct: 1229 acattaacaagtgccttcgatgacaggagaagacacttggtttcttgccctgcgtcagtt 1170 Query: 629 tgctgtgcatacctgttgacttgaatatttccatcaaaaataccatttcctgtaccacaa 688 || |||||||| ||||| |||| |||||||||||||| || ||||| ||||||||| || Sbjct: 1169 tgttgtgcatatctgttcactttgatatttccatcaaatatgccattccctgtaccagaa 1110 Query: 689 gcaatcaatttgtggagcttgtcgtgaaaaacctcttgggtgatcaagtat 739 ||||||||| | || | | ||| ||||| ||||||||||||||||||||| Sbjct: 1109 gcaatcaatctatgtatc-tgttgtgaacgacctcttgggtgatcaagtat 1060
>gb|AY110358.1| Zea mays CL3939_1 mRNA sequence Length = 1304 Score = 139 bits (70), Expect = 1e-29 Identities = 154/182 (84%) Strand = Plus / Plus Query: 463 gcctctcgcctggaagtagaagagctcgttcgggtcgagctccccgctgatggcagctcc 522 |||||| ||||||||||||||||||||||| || || ||||| || |||||||| || || Sbjct: 939 gcctctagcctggaagtagaagagctcgtttggatcaagctcaccactgatggcggcacc 998 Query: 523 atgcgtgcatttgacatcgtcagcgatgatctgaaggtttggcttcacattcacgacagc 582 ||| || || || ||||| ||||| || ||||||||||| ||||| ||||| || | || Sbjct: 999 atgagtacacttcacatcatcagcaataatctgaaggttcggcttgacattaacaagcgc 1058 Query: 583 ctttggtgagagcagaagacacttggtttgttgccctgcatcggtttgctgtgcatacct 642 ||||||||| || | ||| |||||||||| |||||| ||||| ||||||||||||||||| Sbjct: 1059 ctttggtgataggataaggcacttggtttcttgccccgcatcagtttgctgtgcatacct 1118 Query: 643 gt 644 || Sbjct: 1119 gt 1120
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 135 bits (68), Expect = 2e-28 Identities = 119/136 (87%) Strand = Plus / Plus Query: 509 ctgatggcagctccatgcgtgcatttgacatcgtcagcgatgatctgaaggtttggcttc 568 ||||||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||| Sbjct: 1503444 ctgatggcagctccatgtgtacatttgacatcatcagcaatgatctgaaggtttggcttc 1503503 Query: 569 acattcacgacagcctttggtgagagcagaagacacttggtttgttgccctgcatcggtt 628 ||||| || | ||||| | ||| || |||||||||||||||| ||||||||| || ||| Sbjct: 1503504 acattaacaagtgccttcgatgacaggagaagacacttggtttcttgccctgcgtcagtt 1503563 Query: 629 tgctgtgcatacctgt 644 || |||||||| |||| Sbjct: 1503564 tgttgtgcatatctgt 1503579 Score = 79.8 bits (40), Expect = 1e-11 Identities = 89/104 (85%), Gaps = 1/104 (0%) Strand = Plus / Plus Query: 636 catacctgttgacttgaatatttccatcaaaaataccatttcctgtaccacaagcaatca 695 |||||||||| |||| |||||||||||||| || ||||| ||||||||| ||||||||| Sbjct: 1504393 catacctgttcactttgatatttccatcaaatatgccattccctgtaccagaagcaatca 1504452 Query: 696 atttgtggagcttgtcgtgaaaaacctcttgggtgatcaagtat 739 || | || | | ||| ||||| ||||||||||||||||||||| Sbjct: 1504453 atctatgtatc-tgttgtgaacgacctcttgggtgatcaagtat 1504495
>dbj|AP002860.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0409B08 Length = 134673 Score = 135 bits (68), Expect = 2e-28 Identities = 119/136 (87%) Strand = Plus / Plus Query: 509 ctgatggcagctccatgcgtgcatttgacatcgtcagcgatgatctgaaggtttggcttc 568 ||||||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||| Sbjct: 69092 ctgatggcagctccatgtgtacatttgacatcatcagcaatgatctgaaggtttggcttc 69151 Query: 569 acattcacgacagcctttggtgagagcagaagacacttggtttgttgccctgcatcggtt 628 ||||| || | ||||| | ||| || |||||||||||||||| ||||||||| || ||| Sbjct: 69152 acattaacaagtgccttcgatgacaggagaagacacttggtttcttgccctgcgtcagtt 69211 Query: 629 tgctgtgcatacctgt 644 || |||||||| |||| Sbjct: 69212 tgttgtgcatatctgt 69227 Score = 79.8 bits (40), Expect = 1e-11 Identities = 89/104 (85%), Gaps = 1/104 (0%) Strand = Plus / Plus Query: 636 catacctgttgacttgaatatttccatcaaaaataccatttcctgtaccacaagcaatca 695 |||||||||| |||| |||||||||||||| || ||||| ||||||||| ||||||||| Sbjct: 70041 catacctgttcactttgatatttccatcaaatatgccattccctgtaccagaagcaatca 70100 Query: 696 atttgtggagcttgtcgtgaaaaacctcttgggtgatcaagtat 739 || | || | | ||| ||||| ||||||||||||||||||||| Sbjct: 70101 atctatgtatc-tgttgtgaacgacctcttgggtgatcaagtat 70143
>ref|NM_102985.3| Arabidopsis thaliana ATNAP6 (NON-INTRINSIC ABC PROTEIN 6) AT1G32500 (ATNAP6) mRNA, complete cds Length = 1808 Score = 52.0 bits (26), Expect = 0.003 Identities = 44/50 (88%) Strand = Plus / Minus Query: 509 ctgatggcagctccatgcgtgcatttgacatcgtcagcgatgatctgaag 558 ||||| ||||||||||| | |||||||||||| || || ||||||||||| Sbjct: 1377 ctgatagcagctccatgagagcatttgacatcatctgcaatgatctgaag 1328
>gb|AY086585.1| Arabidopsis thaliana clone 259653 mRNA, complete sequence Length = 1728 Score = 52.0 bits (26), Expect = 0.003 Identities = 44/50 (88%) Strand = Plus / Minus Query: 509 ctgatggcagctccatgcgtgcatttgacatcgtcagcgatgatctgaag 558 ||||| ||||||||||| | |||||||||||| || || ||||||||||| Sbjct: 1297 ctgatagcagctccatgagagcatttgacatcatctgcaatgatctgaag 1248
>gb|AC007767.3|F5D14 Sequence of BAC F5D14 from Arabidopsis thaliana chromosome 1, complete sequence Length = 127462 Score = 52.0 bits (26), Expect = 0.003 Identities = 44/50 (88%) Strand = Plus / Plus Query: 509 ctgatggcagctccatgcgtgcatttgacatcgtcagcgatgatctgaag 558 ||||| ||||||||||| | |||||||||||| || || ||||||||||| Sbjct: 112041 ctgatagcagctccatgagagcatttgacatcatctgcaatgatctgaag 112090
>gb|AC135503.8| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0117L20 map S2137, complete sequence Length = 125303 Score = 44.1 bits (22), Expect = 0.66 Identities = 73/90 (81%) Strand = Plus / Minus Query: 532 tttgacatcgtcagcgatgatctgaaggtttggcttcacattcacgacagcctttggtga 591 |||| |||| ||||| ||||||| || |||||| || ||||| || | ||||| | ||| Sbjct: 99823 tttggcatcatcagcaatgatctaaatgtttggtttgacattaacaagtgccttcgatga 99764 Query: 592 gagcagaagacacttggtttgttgccctgc 621 || |||| ||||||||||| ||||||||| Sbjct: 99763 caggagaatacacttggtttcttgccctgc 99734
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.66 Identities = 73/90 (81%) Strand = Plus / Minus Query: 532 tttgacatcgtcagcgatgatctgaaggtttggcttcacattcacgacagcctttggtga 591 |||| |||| ||||| ||||||| || |||||| || ||||| || | ||||| | ||| Sbjct: 8196468 tttggcatcatcagcaatgatctaaatgtttggtttgacattaacaagtgccttcgatga 8196409 Query: 592 gagcagaagacacttggtttgttgccctgc 621 || |||| ||||||||||| ||||||||| Sbjct: 8196408 caggagaatacacttggtttcttgccctgc 8196379
>gb|AE017125.1| Helicobacter hepaticus ATCC 51449, complete genome Length = 1799146 Score = 44.1 bits (22), Expect = 0.66 Identities = 22/22 (100%) Strand = Plus / Plus Query: 580 agcctttggtgagagcagaaga 601 |||||||||||||||||||||| Sbjct: 1383431 agcctttggtgagagcagaaga 1383452
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.66 Identities = 73/90 (81%) Strand = Plus / Minus Query: 532 tttgacatcgtcagcgatgatctgaaggtttggcttcacattcacgacagcctttggtga 591 |||| |||| ||||| ||||||| || |||||| || ||||| || | ||||| | ||| Sbjct: 8267231 tttggcatcatcagcaatgatctaaatgtttggtttgacattaacaagtgccttcgatga 8267172 Query: 592 gagcagaagacacttggtttgttgccctgc 621 || |||| ||||||||||| ||||||||| Sbjct: 8267171 caggagaatacacttggtttcttgccctgc 8267142
>emb|AL593856.8| Human DNA sequence from clone RP11-8J9 on chromosome 1 Contains the 5' end of the ATPAF1 gene for ATP synthase mitochondrial F1 complex assembly factor 1, a secreted protein of unknown function (SPUF) pseudogene, three novel genes, gene KIAA0494, a novel pseudogene and the 5' end of the CYP4B1 gene for cytochrome P450 family 4 subfamily B polypeptide 1, complete sequence Length = 157373 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 atttacaaataataagcaaaa 157 ||||||||||||||||||||| Sbjct: 119781 atttacaaataataagcaaaa 119761
>gb|AC009721.9| Homo sapiens 12q24.1-116.6-118.9 BAC RP11-129O9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166765 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 77 agaaacatctatttagaagaa 97 ||||||||||||||||||||| Sbjct: 25018 agaaacatctatttagaagaa 24998
>ref|NM_166061.1| Drosophila melanogaster CG12862-RB, transcript variant B (CG12862), mRNA Length = 515 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 640 cctgttgacttgaatatttcc 660 ||||||||||||||||||||| Sbjct: 146 cctgttgacttgaatatttcc 166
>gb|AC007580.6| Drosophila melanogaster, chromosome 2R, region 50F-51C, BAC clone BACR07P02, complete sequence Length = 160920 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 640 cctgttgacttgaatatttcc 660 ||||||||||||||||||||| Sbjct: 39682 cctgttgacttgaatatttcc 39662
>gb|AC008306.3|AC008306 Drosophila melanogaster, chromosome 2R, region 51B-51B, BAC clone BACR27M04, complete sequence Length = 169689 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 640 cctgttgacttgaatatttcc 660 ||||||||||||||||||||| Sbjct: 159798 cctgttgacttgaatatttcc 159778
>gb|AC016714.5| Homo sapiens BAC clone RP11-290E5 from 2, complete sequence Length = 56048 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 147 aataagcaaaatctcaaaaga 167 ||||||||||||||||||||| Sbjct: 45952 aataagcaaaatctcaaaaga 45932
>gb|AE003813.3| Drosophila melanogaster chromosome 2R, section 37 of 73 of the complete sequence Length = 266851 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 640 cctgttgacttgaatatttcc 660 ||||||||||||||||||||| Sbjct: 9694 cctgttgacttgaatatttcc 9674
>emb|AL133239.4|CNS01DUC Human chromosome 14 DNA sequence BAC R-71I8 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 131637 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 126 ataaacaagtaatttacaaat 146 ||||||||||||||||||||| Sbjct: 79922 ataaacaagtaatttacaaat 79902 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,577,222 Number of Sequences: 3902068 Number of extensions: 6577222 Number of successful extensions: 123542 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 123348 Number of HSP's gapped (non-prelim): 190 length of query: 749 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 726 effective length of database: 17,143,297,704 effective search space: 12446034133104 effective search space used: 12446034133104 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
