Clone Information

BLAST Search Result

Clone Name	rbags17f19
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY739290.1\| Zea mays protein disulfide isomerase (PDIL2-3) mR...	361	2e-96
2	dbj\|AK072941.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	353	4e-94
3	dbj\|AK062254.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	345	1e-91
4	gb\|AY112452.1\| Zea mays CL286_2 mRNA sequence	210	4e-51
5	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	143	8e-31
6	dbj\|AP005393.3\| Oryza sativa (japonica cultivar-group) genomic D...	143	8e-31
7	dbj\|AP005559.3\| Oryza sativa (japonica cultivar-group) genomic D...	143	8e-31
8	gb\|AC011382.4\| Homo sapiens chromosome 5 clone CTB-13H5, complet...	44	0.52
9	emb\|BX511005.6\| Zebrafish DNA sequence from clone DKEY-72N1 in l...	42	2.1
10	gb\|AE004686.1\| Pseudomonas aeruginosa PAO1, section 247 of 529 o...	42	2.1
11	gb\|AC156989.3\| Mus musculus chromosome 1, clone RP23-379L2, comp...	42	2.1
12	gb\|AC113182.14\| Mus musculus chromosome 8, clone RP23-39F24, com...	42	2.1
13	ref\|XM_483499.1\| Oryza sativa (japonica cultivar-group), mRNA	40	8.1
14	gb\|AC110913.13\| Mus musculus chromosome 19, clone RP24-399E19, c...	40	8.1
15	gb\|AC113587.16\| Mus musculus chromosome 15, clone RP24-424I13, c...	40	8.1
16	gb\|CP000081.1\| Leishmania major chromosome 35, complete sequence	40	8.1
17	gb\|AC158606.14\| Mus musculus 10 BAC RP24-456P10 (Roswell Park Ca...	40	8.1
18	gb\|AC139349.4\| Mus musculus BAC clone RP24-318A14 from chromosom...	40	8.1
19	ref\|XM_953631.1\| Neurospora crassa OR74A hypothetical protein (N...	40	8.1
20	ref\|XM_330307.1\| Neurospora crassa OR74A hypothetical protein (N...	40	8.1
21	gb\|AC119218.7\| Mus musculus chromosome 7, clone RP24-200I20, com...	40	8.1
22	gb\|AC131669.3\| Mus musculus BAC clone RP23-307E9 from chromosome...	40	8.1
23	gb\|AC113198.15\| Mus musculus chromosome 14, clone RP23-248E15, c...	40	8.1
24	gb\|AC122250.4\| Mus musculus BAC clone RP23-167A3 from chromosome...	40	8.1
25	emb\|AJ224870.1\|SCAJ4870 Streptomyces clavuligerus lexA, nrdR & n...	40	8.1
26	gb\|AC162304.4\| Mus musculus chromosome 7, clone RP23-350J16, com...	40	8.1
27	gb\|AC114407.24\| Mus musculus chromosome 10, clone RP23-51G1, com...	40	8.1
28	emb\|AL096814.26\|HSDJ139D8 Human DNA sequence from clone RP1-139D...	40	8.1
29	emb\|AL035608.11\|HS479J7 Human DNA sequence from clone RP3-479J7 ...	40	8.1
30	emb\|AL772193.5\| Zebrafish DNA sequence from clone CH211-194C5 in...	40	8.1
31	gb\|AC093905.3\| Homo sapiens BAC clone RP11-739C17 from 4, comple...	40	8.1
32	gb\|AC092810.2\| Homo sapiens chromosome 1 clone RP11-385M4, compl...	40	8.1
33	gb\|AC080066.6\| Homo sapiens BAC clone CTD-2321M19 from 7, comple...	40	8.1
34	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.1
35	dbj\|AP005529.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.1
36	dbj\|AP000388.1\| Arabidopsis thaliana genomic DNA, chromosome 3, ...	40	8.1
37	emb\|BX470085.6\| Zebrafish DNA sequence from clone DKEY-238K17 in...	40	8.1
38	dbj\|AK119370.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	8.1
39	dbj\|AK073978.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	8.1
40	tpe\|BN000648.1\| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr...	40	8.1
41	emb\|AL355834.4\|CNS05TCN Human chromosome 14 DNA sequence BAC R-9...	40	8.1
42	gb\|AC123724.9\| Mus musculus chromosome 15, clone RP23-432N1, com...	40	8.1
43	emb\|AL939130.1\|SCO939130 Streptomyces coelicolor A3(2) complete ...	40	8.1
44	gb\|AC132382.3\| Mus musculus BAC clone RP23-425E9 from 8, complet...	40	8.1
45	emb\|AL592224.17\| Mouse DNA sequence from clone RP23-174G1 on chr...	40	8.1

>gb|AY739290.1| Zea mays protein disulfide isomerase (PDIL2-3) mRNA, complete cds
          Length = 1531

 Score =  361 bits (182), Expect = 2e-96
 Identities = 362/422 (85%)
 Strand = Plus / Minus

                                                                        
Query: 175  agaatcacaactcgtcgttgggcgcagagctgtccgccatgagctcctcgagcgagaact 234
            ||||||||||||| ||||| |  |  ||||||||  |||||||||| ||||| ||||| |
Sbjct: 1374 agaatcacaactcatcgtttgctgaggagctgtcgcccatgagctcgtcgagggagaatt 1315

                                                                        
Query: 235  cgtcctcctcgatgacctctccatccttgccgtcccatggttccgactggaccaccgtcg 294
            | |||||||| |||||||||||||| ||||||||||| || || |||  ||| || || |
Sbjct: 1314 catcctcctcaatgacctctccatctttgccgtcccacggctcggacgcgactactgtag 1255

                                                                        
Query: 295  gggcgccctccagaggaaggttgccctttccgccgcgccctgcctccttcacaaactcgg 354
            | ||  | | |||||||||||| |||||||| || ||||||||||||||||| |||||| 
Sbjct: 1254 gtgcatcgttcagaggaaggtttccctttccaccacgccctgcctccttcacgaactcga 1195

                                                                        
Query: 355  tgatttcggcgagctcgaaggcgctacggagcggagcgtatgcgcctttcttcacgttga 414
            |||||||| || ||| |||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct: 1194 tgatttcgtcgcgctggaaggcactacggagtggagcgtatgcacctttcttcacgttga 1135

                                                                        
Query: 415  gagcgaccatggctggatagccatagccaccgactccgacctgcttctccagatcagctt 474
            |||| |||||||| |||||||| ||||| || || || ||||| ||||| |||| |||||
Sbjct: 1134 gagctaccatggcgggatagccgtagccgcccacaccaacctggttctcgagattagctt 1075

                                                                        
Query: 475  gcttgccggcgcctgcccagacaaaactgtatggactcttcttaaatttctcagcaacag 534
            ||||||| ||  ||| |||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct: 1074 gcttgccagcagctgtccagacaaaactgtatggactctttttaaacttctcagctacag 1015

                                                                        
Query: 535  atagtagcagctcaaggtacttgtttcttccttctgcctttgagtccaggatgtctggaa 594
            | || || ||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 1014 agagcaggagctcaaggtacttgtttcttccttctgcctttgaatcaaggatgtctggaa 955

              
Query: 595  gg 596
            ||
Sbjct: 954  gg 953

to top

>dbj|AK072941.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150F04, full
            insert sequence
          Length = 1738

 Score =  353 bits (178), Expect = 4e-94
 Identities = 361/422 (85%)
 Strand = Plus / Minus

                                                                        
Query: 175  agaatcacaactcgtcgttgggcgcagagctgtccgccatgagctcctcgagcgagaact 234
            |||||||||||||||| ||    | |||| |||| ||||| |||||||| || ||||| |
Sbjct: 1573 agaatcacaactcgtcatttactggagagttgtcggccatcagctcctcaagggagaatt 1514

                                                                        
Query: 235  cgtcctcctcgatgacctctccatccttgccgtcccatggttccgactggaccaccgtcg 294
            ||||||| || || ||||| ||||| ||||||||||||||||| || ||||| | ||| |
Sbjct: 1513 cgtcctcttcaataacctcaccatctttgccgtcccatggttcagattggactatcgttg 1454

                                                                        
Query: 295  gggcgccctccagaggaaggttgccctttccgccgcgccctgcctccttcacaaactcgg 354
            |||  || |||| |||||| || ||||| || ||||||||||| |||||||||||||| |
Sbjct: 1453 gggtaccgtccaaaggaagattacccttcccaccgcgccctgcttccttcacaaactcag 1394

                                                                        
Query: 355  tgatttcggcgagctcgaaggcgctacggagcggagcgtatgcgcctttcttcacgttga 414
            | |||||  | |||| ||| || |||||||| ||||| ||||||||||| ||||||||| 
Sbjct: 1393 ttatttcatcaagctggaaagcactacggagtggagcatatgcgccttttttcacgttgt 1334

                                                                        
Query: 415  gagcgaccatggctggatagccatagccaccgactccgacctgcttctccagatcagctt 474
            |||| ||||| |||||||||||||| ||||| ||||| || |||||||| ||||||||||
Sbjct: 1333 gagcaaccatcgctggatagccataaccaccaactccaacttgcttctcaagatcagctt 1274

                                                                        
Query: 475  gcttgccggcgcctgcccagacaaaactgtatggactcttcttaaatttctcagcaacag 534
            |||| || ||  ||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1273 gcttcccagcagctgtccagacaaaactgtatggactctttttaaatttctcagcaacag 1214

                                                                        
Query: 535  atagtagcagctcaaggtacttgtttcttccttctgcctttgagtccaggatgtctggaa 594
            ||| |||||||||||||||||||||||||||||| |||||||| |||| ||| |||||||
Sbjct: 1213 ataatagcagctcaaggtacttgtttcttccttcggcctttgaatccaagatatctggaa 1154

              
Query: 595  gg 596
            ||
Sbjct: 1153 gg 1152

to top

>dbj|AK062254.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-G06, full
            insert sequence
          Length = 1642

 Score =  345 bits (174), Expect = 1e-91
 Identities = 360/422 (85%)
 Strand = Plus / Minus

                                                                        
Query: 175  agaatcacaactcgtcgttgggcgcagagctgtccgccatgagctcctcgagcgagaact 234
            |||||||||||||||| ||    | |||| |||| ||||| |||||||| || ||||| |
Sbjct: 1429 agaatcacaactcgtcatttactggagagttgtcggccatcagctcctcaagggagaatt 1370

                                                                        
Query: 235  cgtcctcctcgatgacctctccatccttgccgtcccatggttccgactggaccaccgtcg 294
            ||||||| || || ||||| ||||| ||||||||||||||||| || ||||| | ||| |
Sbjct: 1369 cgtcctcttcaataacctcaccatctttgccgtcccatggttcagattggactatcgttg 1310

                                                                        
Query: 295  gggcgccctccagaggaaggttgccctttccgccgcgccctgcctccttcacaaactcgg 354
            |||  || |||| |||||| || ||||| || ||||||||||| ||| |||||||||| |
Sbjct: 1309 gggtaccgtccaaaggaagattacccttcccaccgcgccctgcttccctcacaaactcag 1250

                                                                        
Query: 355  tgatttcggcgagctcgaaggcgctacggagcggagcgtatgcgcctttcttcacgttga 414
            | |||||  | |||| ||| || |||||||| ||||| ||||||||||| ||||||||||
Sbjct: 1249 ttatttcatcaagctggaaagcactacggagtggagcatatgcgccttttttcacgttga 1190

                                                                        
Query: 415  gagcgaccatggctggatagccatagccaccgactccgacctgcttctccagatcagctt 474
            | || ||||| |||||||||||||| ||||| ||||| || |||||||| ||||||||||
Sbjct: 1189 gggcaaccatcgctggatagccataaccaccaactccaacttgcttctcaagatcagctt 1130

                                                                        
Query: 475  gcttgccggcgcctgcccagacaaaactgtatggactcttcttaaatttctcagcaacag 534
            |||| || ||  ||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1129 gcttcccagcagctgtccagacaaaactgtatggactctttttaaatttctcagcaacag 1070

                                                                        
Query: 535  atagtagcagctcaaggtacttgtttcttccttctgcctttgagtccaggatgtctggaa 594
            ||| |||||||||||||||||||||||||||||| |||||||| |||| ||| |||||||
Sbjct: 1069 ataatagcagctcaaggtacttgtttcttccttcggcctttgaatccaagatatctggaa 1010

              
Query: 595  gg 596
            ||
Sbjct: 1009 gg 1008

to top

>gb|AY112452.1| Zea mays CL286_2 mRNA sequence
          Length = 1510

 Score =  210 bits (106), Expect = 4e-51
 Identities = 247/294 (84%)
 Strand = Plus / Minus

                                                                        
Query: 175  agaatcacaactcgtcgttgggcgcagagctgtccgccatgagctcctcgagcgagaact 234
            ||||||||||||| ||||| |  |  ||||||||  |||||||||| ||||| ||||| |
Sbjct: 1374 agaatcacaactcatcgtttgctgaggagctgtcgcccatgagctcgtcgagggagaatt 1315

                                                                        
Query: 235  cgtcctcctcgatgacctctccatccttgccgtcccatggttccgactggaccaccgtcg 294
            | |||||||| |||||||||||||| ||||||||||| || || |||  ||| || || |
Sbjct: 1314 catcctcctcaatgacctctccatctttgccgtcccacggctcggacgcgactactgtag 1255

                                                                        
Query: 295  gggcgccctccagaggaaggttgccctttccgccgcgccctgcctccttcacaaactcgg 354
            | ||  | | |||||||||||| |||||||| || ||||||||||||||||| |||||| 
Sbjct: 1254 gtgcatcgttcagaggaaggtttccctttccaccacgccctgcctccttcacgaactcga 1195

                                                                        
Query: 355  tgatttcggcgagctcgaaggcgctacggagcggagcgtatgcgcctttcttcacgttga 414
            |||||||| || ||| |||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct: 1194 tgatttcgtcgcgctggaaggcactacggagtggagcgtatgcacctttcttcacgttga 1135

                                                                  
Query: 415  gagcgaccatggctggatagccatagccaccgactccgacctgcttctccagat 468
            |||| |||||||| |||||||| ||||| || || || ||||| ||||| ||||
Sbjct: 1134 gagctaccatggcgggatagccgtagccgcccacaccaacctggttctcgagat 1081



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 52/62 (83%)
 Strand = Plus / Minus

                                                                        
Query: 491  ccagacaaaactgtatggactcttcttaaatttctcagcaacagatagtagcagctcaag 550
            ||||||||||||||||||||||     ||| |||||||| ||||| || || ||||||||
Sbjct: 1058 ccagacaaaactgtatggactcnnnnnaaacttctcagctacagagagcaggagctcaag 999

              
Query: 551  gt 552
            ||
Sbjct: 998  gt 997

to top

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  143 bits (72), Expect = 8e-31
 Identities = 90/96 (93%)
 Strand = Plus / Minus

                                                                            
Query: 501      ctgtatggactcttcttaaatttctcagcaacagatagtagcagctcaaggtacttgttt 560
                |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 16880229 ctgtatggactctttttaaatttctcagcaacagataatagcagctcaaggtacttgttt 16880170

                                                    
Query: 561      cttccttctgcctttgagtccaggatgtctggaagg 596
                |||||||| |||||||| |||| ||| |||||||||
Sbjct: 16880169 cttccttcggcctttgaatccaagatatctggaagg 16880134



 Score =  131 bits (66), Expect = 3e-27
 Identities = 111/126 (88%)
 Strand = Plus / Minus

                                                                            
Query: 378      ctacggagcggagcgtatgcgcctttcttcacgttgagagcgaccatggctggatagcca 437
                |||||||| ||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 16880755 ctacggagtggagcatatgcgccttttttcacgttgagagcaaccatcgctggatagcca 16880696

                                                                            
Query: 438      tagccaccgactccgacctgcttctccagatcagcttgcttgccggcgcctgcccagaca 497
                || ||||| ||||| || |||||||| |||||||||||||| || ||  ||| |||||||
Sbjct: 16880695 taaccaccaactccaacttgcttctcaagatcagcttgcttcccagcagctgtccagaca 16880636

                      
Query: 498      aaactg 503
                ||||||
Sbjct: 16880635 aaactg 16880630



 Score =  107 bits (54), Expect = 4e-20
 Identities = 147/178 (82%)
 Strand = Plus / Minus

                                                                            
Query: 175      agaatcacaactcgtcgttgggcgcagagctgtccgccatgagctcctcgagcgagaact 234
                |||||||||||||||| ||    | |||| |||| ||||| |||||||| || ||||| |
Sbjct: 16881040 agaatcacaactcgtcatttactggagagttgtcggccatcagctcctcaagggagaatt 16880981

                                                                            
Query: 235      cgtcctcctcgatgacctctccatccttgccgtcccatggttccgactggaccaccgtcg 294
                ||||||| || || ||||| ||||| ||||||||||||||||| || ||||| | ||| |
Sbjct: 16880980 cgtcctcttcaataacctcaccatctttgccgtcccatggttcagattggactatcgttg 16880921

                                                                          
Query: 295      gggcgccctccagaggaaggttgccctttccgccgcgccctgcctccttcacaaactc 352
                |||  || |||| |||||| || ||||| || ||||||||||| ||||||||||||||
Sbjct: 16880920 gggtaccgtccaaaggaagattacccttcccaccgcgccctgcttccttcacaaactc 16880863

to top

>dbj|AP005393.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0488D02
          Length = 154537

 Score =  143 bits (72), Expect = 8e-31
 Identities = 90/96 (93%)
 Strand = Plus / Minus

                                                                         
Query: 501   ctgtatggactcttcttaaatttctcagcaacagatagtagcagctcaaggtacttgttt 560
             |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 10042 ctgtatggactctttttaaatttctcagcaacagataatagcagctcaaggtacttgttt 9983

                                                 
Query: 561   cttccttctgcctttgagtccaggatgtctggaagg 596
             |||||||| |||||||| |||| ||| |||||||||
Sbjct: 9982  cttccttcggcctttgaatccaagatatctggaagg 9947



 Score =  131 bits (66), Expect = 3e-27
 Identities = 111/126 (88%)
 Strand = Plus / Minus

                                                                         
Query: 378   ctacggagcggagcgtatgcgcctttcttcacgttgagagcgaccatggctggatagcca 437
             |||||||| ||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 10568 ctacggagtggagcatatgcgccttttttcacgttgagagcaaccatcgctggatagcca 10509

                                                                         
Query: 438   tagccaccgactccgacctgcttctccagatcagcttgcttgccggcgcctgcccagaca 497
             || ||||| ||||| || |||||||| |||||||||||||| || ||  ||| |||||||
Sbjct: 10508 taaccaccaactccaacttgcttctcaagatcagcttgcttcccagcagctgtccagaca 10449

                   
Query: 498   aaactg 503
             ||||||
Sbjct: 10448 aaactg 10443



 Score =  107 bits (54), Expect = 4e-20
 Identities = 147/178 (82%)
 Strand = Plus / Minus

                                                                         
Query: 175   agaatcacaactcgtcgttgggcgcagagctgtccgccatgagctcctcgagcgagaact 234
             |||||||||||||||| ||    | |||| |||| ||||| |||||||| || ||||| |
Sbjct: 10853 agaatcacaactcgtcatttactggagagttgtcggccatcagctcctcaagggagaatt 10794

                                                                         
Query: 235   cgtcctcctcgatgacctctccatccttgccgtcccatggttccgactggaccaccgtcg 294
             ||||||| || || ||||| ||||| ||||||||||||||||| || ||||| | ||| |
Sbjct: 10793 cgtcctcttcaataacctcaccatctttgccgtcccatggttcagattggactatcgttg 10734

                                                                       
Query: 295   gggcgccctccagaggaaggttgccctttccgccgcgccctgcctccttcacaaactc 352
             |||  || |||| |||||| || ||||| || ||||||||||| ||||||||||||||
Sbjct: 10733 gggtaccgtccaaaggaagattacccttcccaccgcgccctgcttccttcacaaactc 10676

to top

>dbj|AP005559.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1163_C07
          Length = 107121

 Score =  143 bits (72), Expect = 8e-31
 Identities = 90/96 (93%)
 Strand = Plus / Minus

                                                                         
Query: 501   ctgtatggactcttcttaaatttctcagcaacagatagtagcagctcaaggtacttgttt 560
             |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 77920 ctgtatggactctttttaaatttctcagcaacagataatagcagctcaaggtacttgttt 77861

                                                 
Query: 561   cttccttctgcctttgagtccaggatgtctggaagg 596
             |||||||| |||||||| |||| ||| |||||||||
Sbjct: 77860 cttccttcggcctttgaatccaagatatctggaagg 77825



 Score =  131 bits (66), Expect = 3e-27
 Identities = 111/126 (88%)
 Strand = Plus / Minus

                                                                         
Query: 378   ctacggagcggagcgtatgcgcctttcttcacgttgagagcgaccatggctggatagcca 437
             |||||||| ||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 78446 ctacggagtggagcatatgcgccttttttcacgttgagagcaaccatcgctggatagcca 78387

                                                                         
Query: 438   tagccaccgactccgacctgcttctccagatcagcttgcttgccggcgcctgcccagaca 497
             || ||||| ||||| || |||||||| |||||||||||||| || ||  ||| |||||||
Sbjct: 78386 taaccaccaactccaacttgcttctcaagatcagcttgcttcccagcagctgtccagaca 78327

                   
Query: 498   aaactg 503
             ||||||
Sbjct: 78326 aaactg 78321



 Score =  107 bits (54), Expect = 4e-20
 Identities = 147/178 (82%)
 Strand = Plus / Minus

                                                                         
Query: 175   agaatcacaactcgtcgttgggcgcagagctgtccgccatgagctcctcgagcgagaact 234
             |||||||||||||||| ||    | |||| |||| ||||| |||||||| || ||||| |
Sbjct: 78731 agaatcacaactcgtcatttactggagagttgtcggccatcagctcctcaagggagaatt 78672

                                                                         
Query: 235   cgtcctcctcgatgacctctccatccttgccgtcccatggttccgactggaccaccgtcg 294
             ||||||| || || ||||| ||||| ||||||||||||||||| || ||||| | ||| |
Sbjct: 78671 cgtcctcttcaataacctcaccatctttgccgtcccatggttcagattggactatcgttg 78612

                                                                       
Query: 295   gggcgccctccagaggaaggttgccctttccgccgcgccctgcctccttcacaaactc 352
             |||  || |||| |||||| || ||||| || ||||||||||| ||||||||||||||
Sbjct: 78611 gggtaccgtccaaaggaagattacccttcccaccgcgccctgcttccttcacaaactc 78554

to top

>gb|AC011382.4| Homo sapiens chromosome 5 clone CTB-13H5, complete sequence
          Length = 86829

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 74    ataaagaaaaggcattccaaaaagtg 99
             |||||||| |||||||||||||||||
Sbjct: 50467 ataaagaataggcattccaaaaagtg 50492

to top

>emb|BX511005.6| Zebrafish DNA sequence from clone DKEY-72N1 in linkage group 5,
             complete sequence
          Length = 139111

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 107   caaattgtacagtgtacacat 127
             |||||||||||||||||||||
Sbjct: 59485 caaattgtacagtgtacacat 59505

to top

>gb|AE004686.1| Pseudomonas aeruginosa PAO1, section 247 of 529 of the complete
            genome
          Length = 10905

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 240  tcctcgatgacctctccatcc 260
            |||||||||||||||||||||
Sbjct: 9036 tcctcgatgacctctccatcc 9016

to top

>gb|AC156989.3| Mus musculus chromosome 1, clone RP23-379L2, complete sequence
          Length = 188691

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 75    taaagaaaaggcattccaaaa 95
             |||||||||||||||||||||
Sbjct: 24672 taaagaaaaggcattccaaaa 24692

to top

>gb|AC113182.14| Mus musculus chromosome 8, clone RP23-39F24, complete sequence
          Length = 217373

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 555    ttgtttcttccttctgccttt 575
              |||||||||||||||||||||
Sbjct: 142631 ttgtttcttccttctgccttt 142611

to top

>ref|XM_483499.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1345

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 247  tgacctctccatccttgccg 266
            ||||||||||||||||||||
Sbjct: 1050 tgacctctccatccttgccg 1031

to top

>gb|AC110913.13| Mus musculus chromosome 19, clone RP24-399E19, complete sequence
          Length = 208309

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 313   ggttgccctttccgccgcgccctgcctccttc 344
             ||||||||||||| || | |||||||||||||
Sbjct: 75976 ggttgccctttccccctctccctgcctccttc 76007

to top

>gb|AC113587.16| Mus musculus chromosome 15, clone RP24-424I13, complete sequence
          Length = 191054

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 423   atggctggatagccatagcc 442
             ||||||||||||||||||||
Sbjct: 58625 atggctggatagccatagcc 58644

to top

>gb|CP000081.1| Leishmania major chromosome 35, complete sequence
          Length = 2090491

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 554     cttgtttcttccttctgcctttga 577
               |||||||||| |||||||||||||
Sbjct: 1938790 cttgtttcttacttctgcctttga 1938813

to top

>gb|AC158606.14| Mus musculus 10 BAC RP24-456P10 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 162274

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 63    ctaacattgagataaagaaa 82
             ||||||||||||||||||||
Sbjct: 38331 ctaacattgagataaagaaa 38312

to top

>gb|AC139349.4| Mus musculus BAC clone RP24-318A14 from chromosome 8, complete sequence
          Length = 199464

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 527    agcaacagatagtagcagct 546
              ||||||||||||||||||||
Sbjct: 191521 agcaacagatagtagcagct 191502

to top

>ref|XM_953631.1| Neurospora crassa OR74A hypothetical protein (NCU09658.1) partial
            mRNA
          Length = 3048

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 240  tcctcgatgacctctccatc 259
            ||||||||||||||||||||
Sbjct: 1370 tcctcgatgacctctccatc 1351

to top

>ref|XM_330307.1| Neurospora crassa OR74A hypothetical protein (NCU09658.1) partial
            mRNA
          Length = 3048

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 240  tcctcgatgacctctccatc 259
            ||||||||||||||||||||
Sbjct: 1370 tcctcgatgacctctccatc 1351

to top

>gb|AC119218.7| Mus musculus chromosome 7, clone RP24-200I20, complete sequence
          Length = 171061

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 228    gagaactcgtcctcctcgat 247
              ||||||||||||||||||||
Sbjct: 170896 gagaactcgtcctcctcgat 170915

to top

>gb|AC131669.3| Mus musculus BAC clone RP23-307E9 from chromosome 7, complete sequence
          Length = 189956

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 61     tgctaacattgagataaaga 80
              ||||||||||||||||||||
Sbjct: 127402 tgctaacattgagataaaga 127383

to top

>gb|AC113198.15| Mus musculus chromosome 14, clone RP23-248E15, complete sequence
          Length = 236220

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 72     agataaagaaaaggcattcc 91
              ||||||||||||||||||||
Sbjct: 140406 agataaagaaaaggcattcc 140387

to top

>gb|AC122250.4| Mus musculus BAC clone RP23-167A3 from chromosome 19, complete sequence
          Length = 202060

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 17     caaggacacccccacacctt 36
              ||||||||||||||||||||
Sbjct: 137450 caaggacacccccacacctt 137469

to top

>emb|AJ224870.1|SCAJ4870 Streptomyces clavuligerus lexA, nrdR & nrdJ genes
          Length = 5940

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 233  ctcgtcctcctcgatgacct 252
            ||||||||||||||||||||
Sbjct: 5665 ctcgtcctcctcgatgacct 5646

to top

>gb|AC162304.4| Mus musculus chromosome 7, clone RP23-350J16, complete sequence
          Length = 219899

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 228   gagaactcgtcctcctcgat 247
             ||||||||||||||||||||
Sbjct: 33851 gagaactcgtcctcctcgat 33870

to top

>gb|AC114407.24| Mus musculus chromosome 10, clone RP23-51G1, complete sequence
          Length = 143388

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 63   ctaacattgagataaagaaa 82
            ||||||||||||||||||||
Sbjct: 5674 ctaacattgagataaagaaa 5693

to top

>emb|AL096814.26|HSDJ139D8 Human DNA sequence from clone RP1-139D8 on chromosome 6p12.1-21.1
              Contains genes for GUCA1A (guanylate cyclase activator 1A)
              and GUCA1B (guanylate cyclase activator 1B) both from
              retina, the 3' end of the TReP-132 gene for zinc finger
              transcription regulating protein, the MRPS10 gene for
              mitochondrial ribosomal protein S10, the 5' end the gene
              for a novel protein, the gene for a novel protein and two
              CpG Islands, complete sequence
          Length = 167078

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 23     cacccccacaccttgcacac 42
              ||||||||||||||||||||
Sbjct: 147301 cacccccacaccttgcacac 147320

to top

>emb|AL035608.11|HS479J7 Human DNA sequence from clone RP3-479J7 on chromosome Xq21.33-23
             Contains the gene for tenomodulin protein (TNMD), the
             TM4SF6 gene for transmembrane 4 superfamily member 6, the
             5' end of the gene for sushi-repeat protein (SRPUL) and
             two CpG islands, complete sequence
          Length = 97189

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 554   cttgtttcttccttctgcct 573
             ||||||||||||||||||||
Sbjct: 23481 cttgtttcttccttctgcct 23462

to top

>emb|AL772193.5| Zebrafish DNA sequence from clone CH211-194C5 in linkage group 7 Contains
              a novel gene similar to PPP1R14B (protein phosphatase 1,
              regulatory (inhibitor) subunit 14B), a novel gene similar
              to BRMS1 (breast cancer metastasis-suppressor 1 (BRMS1),
              the pc gene for pyruvate carboxylase and three putative
              novel retrotransposons, complete sequence
          Length = 192531

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 335    tgcctccttcacaaactcgg 354
              ||||||||||||||||||||
Sbjct: 144220 tgcctccttcacaaactcgg 144201

to top

>gb|AC093905.3| Homo sapiens BAC clone RP11-739C17 from 4, complete sequence
          Length = 184862

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 460   tctccagatcagcttgcttg 479
             ||||||||||||||||||||
Sbjct: 52882 tctccagatcagcttgcttg 52901

to top

>gb|AC092810.2| Homo sapiens chromosome 1 clone RP11-385M4, complete sequence
          Length = 173917

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 558   tttcttccttctgcctttga 577
             ||||||||||||||||||||
Sbjct: 54830 tttcttccttctgcctttga 54849

to top

>gb|AC080066.6| Homo sapiens BAC clone CTD-2321M19 from 7, complete sequence
          Length = 75793

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 77    aagaaaaggcattccaaaaa 96
             ||||||||||||||||||||
Sbjct: 16415 aagaaaaggcattccaaaaa 16396

to top

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 247      tgacctctccatccttgccg 266
                ||||||||||||||||||||
Sbjct: 26540041 tgacctctccatccttgccg 26540060

to top

>dbj|AP005529.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0702E04
          Length = 190948

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 247   tgacctctccatccttgccg 266
             ||||||||||||||||||||
Sbjct: 88908 tgacctctccatccttgccg 88927

to top

>dbj|AP000388.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MRI12
          Length = 18212

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 77   aagaaaaggcattccaaaaa 96
            ||||||||||||||||||||
Sbjct: 9513 aagaaaaggcattccaaaaa 9494

to top

>emb|BX470085.6| Zebrafish DNA sequence from clone DKEY-238K17 in linkage group 20,
             complete sequence
          Length = 107263

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 335   tgcctccttcacaaactcgg 354
             ||||||||||||||||||||
Sbjct: 31198 tgcctccttcacaaactcgg 31217

to top

>dbj|AK119370.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-131-H09, full
            insert sequence
          Length = 2945

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 247  tgacctctccatccttgccg 266
            ||||||||||||||||||||
Sbjct: 1139 tgacctctccatccttgccg 1158

to top

>dbj|AK073978.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076N21, full
            insert sequence
          Length = 1345

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 247  tgacctctccatccttgccg 266
            ||||||||||||||||||||
Sbjct: 1050 tgacctctccatccttgccg 1031

to top

>tpe|BN000648.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx119 gene for
            class III peroxidase 119 precursor, exons 1-3
          Length = 2477

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 247  tgacctctccatccttgccg 266
            ||||||||||||||||||||
Sbjct: 2448 tgacctctccatccttgccg 2429

to top

>emb|AL355834.4|CNS05TCN Human chromosome 14 DNA sequence BAC R-932A10 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 222275

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    cacccccacaccttgcacac 42
             ||||||||||||||||||||
Sbjct: 61935 cacccccacaccttgcacac 61916

to top

>gb|AC123724.9| Mus musculus chromosome 15, clone RP23-432N1, complete sequence
          Length = 200503

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 423    atggctggatagccatagcc 442
              ||||||||||||||||||||
Sbjct: 182782 atggctggatagccatagcc 182801

to top

>emb|AL939130.1|SCO939130 Streptomyces coelicolor A3(2) complete genome; segment 27/29
          Length = 303450

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 283    ggaccaccgtcggggcgccc 302
              ||||||||||||||||||||
Sbjct: 157627 ggaccaccgtcggggcgccc 157646

to top

>gb|AC132382.3| Mus musculus BAC clone RP23-425E9 from 8, complete sequence
          Length = 218283

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 527   agcaacagatagtagcagct 546
             ||||||||||||||||||||
Sbjct: 26327 agcaacagatagtagcagct 26308

to top

>emb|AL592224.17| Mouse DNA sequence from clone RP23-174G1 on chromosome 1, complete
              sequence
          Length = 217775

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 497    aaaactgtatggactcttct 516
              ||||||||||||||||||||
Sbjct: 147074 aaaactgtatggactcttct 147055


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,891,618
Number of Sequences: 3902068
Number of extensions: 4891618
Number of successful extensions: 96121
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95941
Number of HSP's gapped (non-prelim): 173
length of query: 596
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 573
effective length of database: 17,143,297,704
effective search space: 9823109584392
effective search space used: 9823109584392
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result