ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags17f16 |
|---|---|
| Clone Library Name | barley_pub |
>CWLO_BACLD (Q65NQ9) Peptidoglycan DL-endopeptidase cwlO precursor (EC 3.4.-.-)| (D-gamma-glutamyl-meso-diaminopimelyl DL-endopeptidase) Length = 452 Score = 39.3 bits (90), Expect = 0.009 Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 7/116 (6%) Frame = -1 Query: 543 TSTQKRG---SRSELRSTASSPSKR-SKTLDDMPRTHGKTRGPFVKYMKD---IETKLEK 385 TS QK+ RSE+ S S K +K D+ + GK + K ++ IE K EK Sbjct: 32 TSQQKQEIQQKRSEVNSGIESKRKEIAKLQDEQKKLEGKIQELDKKALETSNKIEDK-EK 90 Query: 384 ESEKTDSILQALVNQGNEKVRRSEERAQSVKNCQNLAIECGASEESVEYFVACDLF 217 E++KT ++AL + E +R EER++ +KN E G S+ + + F Sbjct: 91 ENKKTKKEVEALKKEIKETEKRIEERSKVIKNRVRSLQENGGSQNYLNVLLGAQSF 146
>PRP4B_HUMAN (Q13523) Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1)| (PRP4 pre-mRNA-processing factor 4 homolog) (PRP4 kinase) Length = 1007 Score = 33.5 bits (75), Expect = 0.51 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 12/85 (14%) Frame = -1 Query: 522 SRSELRSTASSPSKRSKTLDDMPRTH------------GKTRGPFVKYMKDIETKLEKES 379 S+S+ R + SPSKRSK+ D ++ GK R P D + K+E +S Sbjct: 215 SKSKERKKSKSPSKRSKSQDQARKSKSPTLRRRSQEKIGKARSP-----TDDKVKIEDKS 269 Query: 378 EKTDSILQALVNQGNEKVRRSEERA 304 + D ++N+ + R + R+ Sbjct: 270 KSKDRKKSPIINESRSRDRGKKSRS 294
>HISX_NEIMA (Q9JTH9) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 429 Score = 32.3 bits (72), Expect = 1.1 Identities = 15/69 (21%), Positives = 32/69 (46%) Frame = -1 Query: 561 VPSPMSTSTQKRGSRSELRSTASSPSKRSKTLDDMPRTHGKTRGPFVKYMKDIETKLEKE 382 + + + QKRG + + T +K++DD+ T + F + D++T L+ Sbjct: 32 IVADICADVQKRGDAALIEYTNKFDQTNAKSIDDLILTQADLKAAFERIPNDVQTALQTA 91 Query: 381 SEKTDSILQ 355 + + +S Q Sbjct: 92 ARRVESYHQ 100
>A60DA_DROME (P91927) Calcium-binding mitochondrial protein Anon-60Da| Length = 1013 Score = 32.0 bits (71), Expect = 1.5 Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 3/151 (1%) Frame = -1 Query: 561 VPSPMSTSTQKRGSRSELRSTASSPSK-RSKTLDDMPRTHGKTRGPFVKYMKDIETKLEK 385 +PS TST ++ + S +K +TLD MP H + K + TK+ Sbjct: 264 LPSTFQTSTDRQEKLRQSLSVRLEVAKFLQQTLDQMPVQHKEHSSEEAKQFEAFFTKIRN 323 Query: 384 ESE--KTDSILQALVNQGNEKVRRSEERAQSVKNCQNLAIECGASEESVEYFVACDLFKE 211 +E D I++ +E S R Q C+ L + + + + + L Sbjct: 324 PTEPVSNDEIIKFAKRFDDEITLDSLSREQLAALCRVLELNTIGTTTLLRFQLRLKLRSL 383 Query: 210 KHNRTVFQNMKIPEARLIWLKRWCRAKNMYA 118 + V + L+ L++ C+A+ M A Sbjct: 384 ATDDRVIAREGVDSLDLLELQQACKARGMRA 414
>OPTN_MOUSE (Q8K3K8) Optineurin| Length = 584 Score = 31.6 bits (70), Expect = 1.9 Identities = 20/79 (25%), Positives = 37/79 (46%) Frame = -1 Query: 534 QKRGSRSELRSTASSPSKRSKTLDDMPRTHGKTRGPFVKYMKDIETKLEKESEKTDSILQ 355 Q RSE++ + + L + TH K K +K IE ++++EK D + Sbjct: 367 QVESMRSEIKMEQAKTEEEKSRLATLQATHNKLLQEHNKALKTIEELTKQQAEKVDKM-- 424 Query: 354 ALVNQGNEKVRRSEERAQS 298 L+ + +EK+ +E+ S Sbjct: 425 -LLQELSEKLELAEQALAS 442
>HISX_NEIMB (Q9JYH8) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 429 Score = 31.6 bits (70), Expect = 1.9 Identities = 15/69 (21%), Positives = 31/69 (44%) Frame = -1 Query: 561 VPSPMSTSTQKRGSRSELRSTASSPSKRSKTLDDMPRTHGKTRGPFVKYMKDIETKLEKE 382 + + + QKRG + + T +K++DD+ T F + D++T L+ Sbjct: 32 IVADICADVQKRGDAALIEYTNKFDQTNAKSIDDLILTQADLNAAFERIPNDVQTALQTA 91 Query: 381 SEKTDSILQ 355 + + +S Q Sbjct: 92 ARRVESYHQ 100
>HISX_NEIG1 (Q5F7D8) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 429 Score = 31.6 bits (70), Expect = 1.9 Identities = 15/69 (21%), Positives = 31/69 (44%) Frame = -1 Query: 561 VPSPMSTSTQKRGSRSELRSTASSPSKRSKTLDDMPRTHGKTRGPFVKYMKDIETKLEKE 382 + + + QKRG + + T +K++DD+ T F + D++T L+ Sbjct: 32 IVADICADVQKRGDAALIEYTNKFDQTNAKSIDDLILTQADLNAAFERIPNDVQTALQTA 91 Query: 381 SEKTDSILQ 355 + + +S Q Sbjct: 92 ARRVESYHQ 100
>WRK19_ARATH (Q9SZ67) Probable WRKY transcription factor 19 (WRKY DNA-binding| protein 19) Length = 1895 Score = 31.2 bits (69), Expect = 2.5 Identities = 18/60 (30%), Positives = 31/60 (51%) Frame = -1 Query: 528 RGSRSELRSTASSPSKRSKTLDDMPRTHGKTRGPFVKYMKDIETKLEKESEKTDSILQAL 349 +G++ + +KR T+D G T G + Y+K ++ K E +SEK D+ L+ L Sbjct: 275 KGAKGSKMFCKACITKRPLTIDGGGNMGGVTTGDALNYLKAVKDKFE-DSEKYDTFLEVL 333
>NKTR_MOUSE (P30415) NK-tumor recognition protein (Natural-killer cells| cyclophilin-related protein) (NK-TR protein) Length = 1453 Score = 30.8 bits (68), Expect = 3.3 Identities = 21/103 (20%), Positives = 42/103 (40%) Frame = -1 Query: 552 PMSTSTQKRGSRSELRSTASSPSKRSKTLDDMPRTHGKTRGPFVKYMKDIETKLEKESEK 373 P S++++ S S L + P K+ + DD+ H K K KD + K K + Sbjct: 946 PQSSASESESSCSNLGNIRGEPQKQKHSKDDLKGDHTKRAREKSKAKKDKKHKAPKRKQA 1005 Query: 372 TDSILQALVNQGNEKVRRSEERAQSVKNCQNLAIECGASEESV 244 E+ ++ Q K ++++ +C A ++ + Sbjct: 1006 FHWQPPLEFGDDEEEEMNGKQVTQDPKEKRHVSEKCEAVKDGI 1048
>OPTN_PIG (Q7YS99) Optineurin| Length = 574 Score = 30.8 bits (68), Expect = 3.3 Identities = 19/79 (24%), Positives = 35/79 (44%) Frame = -1 Query: 534 QKRGSRSELRSTASSPSKRSKTLDDMPRTHGKTRGPFVKYMKDIETKLEKESEKTDSILQ 355 Q RSE++ + + L + TH + + +K IE +ESEK D + Sbjct: 358 QVESMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEELKRRESEKVDKV-- 415 Query: 354 ALVNQGNEKVRRSEERAQS 298 ++ + N K+ +E+ S Sbjct: 416 -VLQELNGKLEMAEKALAS 433
>SPD5_CAEEL (P91349) Spindle-defective protein 5| Length = 1198 Score = 30.0 bits (66), Expect = 5.7 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = -1 Query: 423 VKYMKDIETKLEKESEKTDSILQALVNQGNEKVRRSEERAQSVKN 289 + Y+ D+ETKL ++ D QALV N+ + E VKN Sbjct: 289 LNYIDDLETKLADAKKENDKARQALVEYMNKCSKLEHEIRTMVKN 333
>RGS1_HUMAN (Q08116) Regulator of G-protein signaling 1 (RGS1) (Early response| protein 1R20) (B-cell activation protein BL34) Length = 196 Score = 30.0 bits (66), Expect = 5.7 Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 4/89 (4%) Frame = -1 Query: 465 DDMPRTHGKTRGPFVK-YMKDIETKLE---KESEKTDSILQALVNQGNEKVRRSEERAQS 298 D M + KT G +K Y++ + LE K S+ D + A V Q ++ + + Q+ Sbjct: 23 DKMQKRRPKTFGMDMKAYLRSMIPHLESGMKSSKSKDVLSAAEVMQWSQSLEKLLAN-QT 81 Query: 297 VKNCQNLAIECGASEESVEYFVACDLFKE 211 +N ++ SEE++E+++AC+ +K+ Sbjct: 82 GQNVFGSFLKSEFSEENIEFWLACEDYKK 110
>Y4095_ARATH (Q9M160) Protein At4g00950| Length = 291 Score = 30.0 bits (66), Expect = 5.7 Identities = 16/38 (42%), Positives = 21/38 (55%) Frame = -1 Query: 558 PSPMSTSTQKRGSRSELRSTASSPSKRSKTLDDMPRTH 445 P STS+ S S L S +SSP + K+L+ PR H Sbjct: 55 PKQHSTSSSSSSSSSPLTSYSSSPFETHKSLELPPRLH 92
>PRP4B_MOUSE (Q61136) Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1)| (PRP4 pre-mRNA-processing factor 4 homolog) (Pre-mRNA protein kinase) Length = 1007 Score = 29.6 bits (65), Expect = 7.4 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 12/87 (13%) Frame = -1 Query: 522 SRSELRSTASSPSKRSKTLDDMPRTH------------GKTRGPFVKYMKDIETKLEKES 379 S+S+ R + SPSKRSK+ D ++ GK R P + MK E K+ Sbjct: 216 SKSKERRKSKSPSKRSKSQDQARKSKSPPLRRRSQEKVGKARSPAEEKMKSEEKGKIKDR 275 Query: 378 EKTDSILQALVNQGNEKVRRSEERAQS 298 +K+ + NE+ R ++++S Sbjct: 276 KKSPIV--------NERSRDRSKKSKS 294
>ANK2_HUMAN (Q01484) Ankyrin-2 (Brain ankyrin) (Ankyrin-B) (Ankyrin,| nonerythroid) Length = 3924 Score = 29.6 bits (65), Expect = 7.4 Identities = 28/114 (24%), Positives = 46/114 (40%) Frame = -1 Query: 555 SPMSTSTQKRGSRSELRSTASSPSKRSKTLDDMPRTHGKTRGPFVKYMKDIETKLEKESE 376 S + TS QK + + +P RSK+ D KT+ P VK ET+ E Sbjct: 3329 SDLDTSVQKTVAPQGQDMASIAPDNRSKSESDASSLDSKTKCP-VKTRSYTETETESRER 3387 Query: 375 KTDSILQALVNQGNEKVRRSEERAQSVKNCQNLAIECGASEESVEYFVACDLFK 214 + L++ K+ S +S + ++ES E+F DL++ Sbjct: 3388 AEELELESEEGATRPKILTSRLPVKSRSTTSSCRGGTSPTKESKEHFF--DLYR 3439 Score = 29.6 bits (65), Expect = 7.4 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 4/88 (4%) Frame = -1 Query: 561 VPSP---MSTSTQKRGSRSELRSTASSPSKRSKTLD-DMPRTHGKTRGPFVKYMKDIETK 394 VP P + T K G + E + S K K + D ++ K P + K + K Sbjct: 1615 VPLPKEQLQTVQDKAGKKCEALAVGRSSEKEGKDIPPDETQSTQKQHKPSLGIKKPVRRK 1674 Query: 393 LEKESEKTDSILQALVNQGNEKVRRSEE 310 L+++ ++ + LQA + K SEE Sbjct: 1675 LKEKQKQKEEGLQASAEKAELKKGSSEE 1702
>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa DNA-pairing protein) (hPOMp Length = 707 Score = 29.6 bits (65), Expect = 7.4 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 5/64 (7%) Frame = -1 Query: 486 SKRSKTLDDMPRTHGKTRGPFVKYMKDIETKLEKESEKT-----DSILQALVNQGNEKVR 322 S+R K+LD+M + + R K MKD + KLE E E ++L+ + + E++R Sbjct: 491 SQRWKSLDEMEK---QQREQVEKNMKDAKDKLESEMEDAYHEHQANLLRQDLMRRQEELR 547 Query: 321 RSEE 310 R EE Sbjct: 548 RMEE 551
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 29.6 bits (65), Expect = 7.4 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 5/64 (7%) Frame = -1 Query: 486 SKRSKTLDDMPRTHGKTRGPFVKYMKDIETKLEKESEKT-----DSILQALVNQGNEKVR 322 S+R K+LD+M + + R K MKD + KLE E E ++L+ + + E++R Sbjct: 483 SQRWKSLDEMEK---QQREQVEKNMKDAKDKLESEMEDAYHEHQANLLRQDLMRRQEELR 539 Query: 321 RSEE 310 R EE Sbjct: 540 RMEE 543
>MIAA_BUCAI (P57632) tRNA delta(2)-isopentenylpyrophosphate transferase (EC| 2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA isopentenyltransferase) (IPTase) (IPPT) Length = 315 Score = 29.6 bits (65), Expect = 7.4 Identities = 12/45 (26%), Positives = 22/45 (48%) Frame = -1 Query: 276 AIECGASEESVEYFVACDLFKEKHNRTVFQNMKIPEARLIWLKRW 142 +I C + EY + +K+ N+ + K+ + +L WLK W Sbjct: 241 SIRCIGYRQMWEYLEYKNSYKDMFNKIIHATRKLAKHQLTWLKNW 285
>LAP4_DROME (Q7KRY7) Protein lap4 (Protein scribble) (Protein smell-impaired)| Length = 1851 Score = 29.6 bits (65), Expect = 7.4 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 8/88 (9%) Frame = -1 Query: 546 STSTQK-RGSRSELRSTASSPSKRSKTLDDMPRTHGKTRGPFVKYMKD----IETKLE-- 388 +TST+K S+L+ST +S + +++ T+ P K + D E+ +E Sbjct: 1682 TTSTEKDEEEESQLQSTPASRDGAEEQQEEVRAKPTPTKVP--KSVSDKKRFFESAMEDQ 1739 Query: 387 -KESEKTDSILQALVNQGNEKVRRSEER 307 K ++KTD + L EK+R+ EER Sbjct: 1740 HKPTQKTDKVFSFLSKDEVEKLRQEEER 1767
>SRR35_HUMAN (Q8WXF0) 35 kDa SR repressor protein (SRrp35)| Length = 261 Score = 29.6 bits (65), Expect = 7.4 Identities = 22/84 (26%), Positives = 38/84 (45%) Frame = -1 Query: 540 STQKRGSRSELRSTASSPSKRSKTLDDMPRTHGKTRGPFVKYMKDIETKLEKESEKTDSI 361 ST R SR+ R+ S RSK+L ++ GK++ + TK +DSI Sbjct: 161 STSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHSDSI 220 Query: 360 LQALVNQGNEKVRRSEERAQSVKN 289 ++ + + SE + Q+ K+ Sbjct: 221 ARSPC-KSPKGYTNSETKVQTAKH 243
>YJEP_ECOLI (P39285) Hypothetical mscS family protein yjeP precursor| Length = 1107 Score = 29.3 bits (64), Expect = 9.7 Identities = 15/29 (51%), Positives = 20/29 (68%) Frame = -1 Query: 390 EKESEKTDSILQALVNQGNEKVRRSEERA 304 EKES++ D+ LQAL NQ N + + ERA Sbjct: 212 EKESQQLDAYLQALRNQLNSQRQLEAERA 240
>OPTN_HUMAN (Q96CV9) Optineurin (Optic neuropathy-inducing protein)| (E3-14.7K-interacting protein) (FIP-2) (Huntingtin-interacting protein HYPL) (NEMO-related protein) (Transcription factor IIIA-interacting protein) (TFIIIA-IntP) Length = 577 Score = 29.3 bits (64), Expect = 9.7 Identities = 20/73 (27%), Positives = 33/73 (45%) Frame = -1 Query: 516 SELRSTASSPSKRSKTLDDMPRTHGKTRGPFVKYMKDIETKLEKESEKTDSILQALVNQG 337 SE++ + L + TH K +K IE KESEK D +A++ + Sbjct: 370 SEIKMEQAKTEDEKSKLTVLQMTHNKLLQEHNNALKTIEELTRKESEKVD---RAVLKEL 426 Query: 336 NEKVRRSEERAQS 298 +EK+ +E+ S Sbjct: 427 SEKLELAEKALAS 439
>SFR11_HUMAN (Q05519) Splicing factor arginine/serine-rich 11 (Arginine-rich 54| kDa nuclear protein) (p54) Length = 484 Score = 29.3 bits (64), Expect = 9.7 Identities = 18/64 (28%), Positives = 30/64 (46%) Frame = -1 Query: 555 SPMSTSTQKRGSRSELRSTASSPSKRSKTLDDMPRTHGKTRGPFVKYMKDIETKLEKESE 376 +P S+ ++ SRS RS + S S+R R+H + RG + K +++ E Sbjct: 260 TPSSSRHRRSRSRSRRRSHSKSRSRRRSKSPRRRRSHSRERGRRSRSTSKTRDKKKEDKE 319 Query: 375 KTDS 364 K S Sbjct: 320 KKRS 323
>OPTN_RAT (Q8R5M4) Optineurin (FIP-2-like protein)| Length = 585 Score = 29.3 bits (64), Expect = 9.7 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 1/80 (1%) Frame = -1 Query: 534 QKRGSRSELRSTASSPSKRSKTLDDMPRTHGKTRGPFVKYMKDIETKLEKESEKTDSI-L 358 Q RSE++ + + L + TH K K ++ IE ++++EK D + L Sbjct: 368 QVESMRSEIKMEQAKTEEEKSRLATLQATHDKLLQEHNKALRTIEELTKQQAEKVDKVQL 427 Query: 357 QALVNQGNEKVRRSEERAQS 298 Q L +EK+ +E+ S Sbjct: 428 QEL----SEKLELAEQALAS 443 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,765,296 Number of Sequences: 219361 Number of extensions: 1384634 Number of successful extensions: 3872 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3721 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3869 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5596027262 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
