ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags17f13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FEM3_CAERE (Q8I8W7) Sex-determination protein fem-3 (Cr-FEM-3) 33 0.68
2EFP_RHIME (Q92ST6) Elongation factor P (EF-P) 33 0.68
3BRO1_CANAL (Q5AJC1) Vacuolar protein-sorting protein BRO1 (BRO d... 30 4.4
4EFP2_RHILO (Q983M5) Elongation factor P 2 (EF-P 2) 30 4.4
5SYM_NITEU (Q82WP0) Methionyl-tRNA synthetase (EC 6.1.1.10) (Meth... 30 7.6
6FZD9_MOUSE (Q9R216) Frizzled 9 precursor (Frizzled-9) (Fz-9) (mF... 29 9.9

>FEM3_CAERE (Q8I8W7) Sex-determination protein fem-3 (Cr-FEM-3)|
          Length = 439

 Score = 33.1 bits (74), Expect = 0.68
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 493 DWEGIHIVKHHTYKQVKWYAEEIHDSASRLLXGY 594
           DW G+ I+    YK ++W+ EE +D +  +L  Y
Sbjct: 313 DWFGVLIMNQIAYKTIRWHEEEYNDGSFPVLDSY 346



to top

>EFP_RHIME (Q92ST6) Elongation factor P (EF-P)|
          Length = 189

 Score = 33.1 bits (74), Expect = 0.68
 Identities = 21/65 (32%), Positives = 31/65 (47%)
 Frame = +1

Query: 397 LSCSVKVGHKHQPPLQNCRDEEENRTHAEHDSDWEGIHIVKHHTYKQVKWYAEEIHDSAS 576
           +S  VKV  +++   Q  R   E+R H     D EG H +   TY Q+   +E+I D  +
Sbjct: 46  ISDGVKVSERYRTTEQVERAFVEDREHTFLYEDGEGFHFMNPETYDQLVMSSEDIGDLKA 105

Query: 577 RLLXG 591
            L  G
Sbjct: 106 YLQEG 110



to top

>BRO1_CANAL (Q5AJC1) Vacuolar protein-sorting protein BRO1 (BRO|
           domain-containing protein 1)
          Length = 945

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 442 QNCRDEEENRTHAEHDSDWEGIHIVKHHTYKQVKWYAEEIHDSASR 579
           ++  D +     AE DS W  I   K+  YK + +Y   +H  A+R
Sbjct: 268 EDTEDSDNRYVAAELDSSWISIIYFKYEYYKSLAYYFNGLHLDANR 313



to top

>EFP2_RHILO (Q983M5) Elongation factor P 2 (EF-P 2)|
          Length = 189

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 20/61 (32%), Positives = 27/61 (44%)
 Frame = +1

Query: 409 VKVGHKHQPPLQNCRDEEENRTHAEHDSDWEGIHIVKHHTYKQVKWYAEEIHDSASRLLX 588
           VKV  +++   Q  R   E R H    +D EG H +   TY QV      + D+A  L  
Sbjct: 50  VKVSERYRTTEQVERAYVEEREHTFLYADGEGFHFMNPETYDQVAVSEAVVGDAAPYLQE 109

Query: 589 G 591
           G
Sbjct: 110 G 110



to top

>SYM_NITEU (Q82WP0) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA|
           ligase) (MetRS)
          Length = 706

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = +1

Query: 469 RTHAEHDSDWEGIHIVKHHTYK----QVKWYAEEIH 564
           R HAEH  D+ G HI     Y     + ++YAE+I+
Sbjct: 74  RVHAEHLRDFTGFHIAFDQYYSTHSDETRYYAEDIY 109



to top

>FZD9_MOUSE (Q9R216) Frizzled 9 precursor (Frizzled-9) (Fz-9) (mFz9) (mFz3)|
          Length = 592

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 29/97 (29%), Positives = 37/97 (38%), Gaps = 10/97 (10%)
 Frame = +3

Query: 270 RLIQQPCRQADEVG---DCSMPGSRQ-----WPLVCFKGLVAHXXXXXXXXXXXCEGRTQ 425
           R  +QPC  A   G   DCS+PG        + L  F  LV                +T 
Sbjct: 480 RATEQPCTAATVPGGRRDCSLPGGSVPTVAVFMLKIFMSLVVGITSGVWVWSSKTF-QTW 538

Query: 426 TSAASAKLPR*RGK*NTCRT*QRLGRHSHC--KAPHI 530
            S    K+   R +   CRT    GR +HC  KAP +
Sbjct: 539 QSLCYRKMAAGRARAKACRTPGGYGRGTHCHYKAPTV 575


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,671,161
Number of Sequences: 219361
Number of extensions: 1940300
Number of successful extensions: 4240
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4239
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5710231900
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top