| Clone Name | rbags17f13 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_187548.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1374 Score = 240 bits (121), Expect = 5e-60 Identities = 193/216 (89%), Gaps = 1/216 (0%) Strand = Plus / Minus Query: 408 tgtgaaggtcggacacaaacatcagccgcctctgcaaaattgccgcgatgaagaggaaaa 467 |||| ||||| || |||| ||| ||||| ||||||| |||||||| ||||||||||| | Sbjct: 1318 tgtgtaggtcagaaacaaccattagccgtctctgcaggattgccgccatgaagaggaaga 1259 Query: 468 tagaacacatgccgaacatgacagcgattgggaaggcattcacattgtaaagcaccacac 527 ||||||||||||| |||||||||| ||| ||||| ||||||||||||||||||||||||| Sbjct: 1258 tagaacacatgccaaacatgacagtgatagggaatgcattcacattgtaaagcaccacac 1199 Query: 528 atacaaacaggttaagtggtatgcggaagaaattcatgatagtgcttctcgcctcctcng 587 | ||||||| ||| |||||||||||||||||||||||||| |||||||| |||||||| Sbjct: 1198 aaacaaacaagttcagtggtatgcggaagaaattcatgattgtgcttcttgcctcctca- 1140 Query: 588 gggatatattgagatctcattttcatgattgatggc 623 || ||||||||||||||||| ||||||||||||||| Sbjct: 1139 ggaatatattgagatctcatcttcatgattgatggc 1104
>dbj|AK065394.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013023A12, full insert sequence Length = 1912 Score = 240 bits (121), Expect = 5e-60 Identities = 193/216 (89%), Gaps = 1/216 (0%) Strand = Plus / Minus Query: 408 tgtgaaggtcggacacaaacatcagccgcctctgcaaaattgccgcgatgaagaggaaaa 467 |||| ||||| || |||| ||| ||||| ||||||| |||||||| ||||||||||| | Sbjct: 1520 tgtgtaggtcagaaacaaccattagccgtctctgcaggattgccgccatgaagaggaaga 1461 Query: 468 tagaacacatgccgaacatgacagcgattgggaaggcattcacattgtaaagcaccacac 527 ||||||||||||| |||||||||| ||| ||||| ||||||||||||||||||||||||| Sbjct: 1460 tagaacacatgccaaacatgacagtgatagggaatgcattcacattgtaaagcaccacac 1401 Query: 528 atacaaacaggttaagtggtatgcggaagaaattcatgatagtgcttctcgcctcctcng 587 | ||||||| ||| |||||||||||||||||||||||||| |||||||| |||||||| Sbjct: 1400 aaacaaacaagttcagtggtatgcggaagaaattcatgattgtgcttcttgcctcctca- 1342 Query: 588 gggatatattgagatctcattttcatgattgatggc 623 || ||||||||||||||||| ||||||||||||||| Sbjct: 1341 ggaatatattgagatctcatcttcatgattgatggc 1306
>dbj|AK060853.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E12, full insert sequence Length = 1245 Score = 240 bits (121), Expect = 5e-60 Identities = 193/216 (89%), Gaps = 1/216 (0%) Strand = Plus / Minus Query: 408 tgtgaaggtcggacacaaacatcagccgcctctgcaaaattgccgcgatgaagaggaaaa 467 |||| ||||| || |||| ||| ||||| ||||||| |||||||| ||||||||||| | Sbjct: 846 tgtgtaggtcagaaacaaccattagccgtctctgcaggattgccgccatgaagaggaaga 787 Query: 468 tagaacacatgccgaacatgacagcgattgggaaggcattcacattgtaaagcaccacac 527 ||||||||||||| |||||||||| ||| ||||| ||||||||||||||||||||||||| Sbjct: 786 tagaacacatgccaaacatgacagtgatagggaatgcattcacattgtaaagcaccacac 727 Query: 528 atacaaacaggttaagtggtatgcggaagaaattcatgatagtgcttctcgcctcctcng 587 | ||||||| ||| |||||||||||||||||||||||||| |||||||| |||||||| Sbjct: 726 aaacaaacaagttcagtggtatgcggaagaaattcatgattgtgcttcttgcctcctca- 668 Query: 588 gggatatattgagatctcattttcatgattgatggc 623 || ||||||||||||||||| ||||||||||||||| Sbjct: 667 ggaatatattgagatctcatcttcatgattgatggc 632
>ref|NM_197382.1| Oryza sativa (japonica cultivar-group) putative transporter (OSJNBb0018B10.4), mRNA Length = 1697 Score = 218 bits (110), Expect = 2e-53 Identities = 227/265 (85%), Gaps = 1/265 (0%) Strand = Plus / Minus Query: 359 gggtttagtggctcatcttctgctgtcatctctgtggccttagttgctctgtgaaggtcg 418 ||||||| ||||||||||| | ||||||||| || || |||| |||||| || || Sbjct: 1367 gggtttaacggctcatcttccccagtcatctctacagcttttgttgatctgtggagatca 1308 Query: 419 gacacaaacatcagccgcctctgcaaaattgccgcgatgaagaggaaaatagaacacatg 478 || |||| |||||||||||||||||| ||||| || ||||| |||||||||| ||||||| Sbjct: 1307 gagacaaccatcagccgcctctgcaagattgctgccatgaaaaggaaaatagcacacatg 1248 Query: 479 ccgaacatgacagcgattgggaaggcattcacattgtaaagcaccacacatacaaacagg 538 || |||||||||| ||| ||||| ||||||||||||||||| |||||||| ||||||||| Sbjct: 1247 ccaaacatgacagtgatggggaatgcattcacattgtaaagaaccacacaaacaaacagg 1188 Query: 539 ttaagtggtatgcggaagaaattcatgatagtgcttctcgcctcctcnggggatatattg 598 || ||||||||||||||||| |||||||| |||||||| |||||||| || ||||| || Sbjct: 1187 ttgagtggtatgcggaagaagttcatgatcgtgcttcttgcctcctca-ggaatatactg 1129 Query: 599 agatctcattttcatgattgatggc 623 || ||||| ||||||||||||||| Sbjct: 1128 ggacctcatcttcatgattgatggc 1104 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 201 ccgtgtcctctctcctgacaaaactgaat 229 |||||| |||||||||||||||| ||||| Sbjct: 1543 ccgtgtactctctcctgacaaaaatgaat 1515
>dbj|AK103488.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033130M19, full insert sequence Length = 1779 Score = 218 bits (110), Expect = 2e-53 Identities = 227/265 (85%), Gaps = 1/265 (0%) Strand = Plus / Minus Query: 359 gggtttagtggctcatcttctgctgtcatctctgtggccttagttgctctgtgaaggtcg 418 ||||||| ||||||||||| | ||||||||| || || |||| |||||| || || Sbjct: 1449 gggtttaacggctcatcttccccagtcatctctacagcttttgttgatctgtggagatca 1390 Query: 419 gacacaaacatcagccgcctctgcaaaattgccgcgatgaagaggaaaatagaacacatg 478 || |||| |||||||||||||||||| ||||| || ||||| |||||||||| ||||||| Sbjct: 1389 gagacaaccatcagccgcctctgcaagattgctgccatgaaaaggaaaatagcacacatg 1330 Query: 479 ccgaacatgacagcgattgggaaggcattcacattgtaaagcaccacacatacaaacagg 538 || |||||||||| ||| ||||| ||||||||||||||||| |||||||| ||||||||| Sbjct: 1329 ccaaacatgacagtgatggggaatgcattcacattgtaaagaaccacacaaacaaacagg 1270 Query: 539 ttaagtggtatgcggaagaaattcatgatagtgcttctcgcctcctcnggggatatattg 598 || ||||||||||||||||| |||||||| |||||||| |||||||| || ||||| || Sbjct: 1269 ttgagtggtatgcggaagaagttcatgatcgtgcttcttgcctcctca-ggaatatactg 1211 Query: 599 agatctcattttcatgattgatggc 623 || ||||| ||||||||||||||| Sbjct: 1210 ggacctcatcttcatgattgatggc 1186 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 201 ccgtgtcctctctcctgacaaaactgaat 229 |||||| |||||||||||||||| ||||| Sbjct: 1625 ccgtgtactctctcctgacaaaaatgaat 1597
>dbj|AK061924.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-B12, full insert sequence Length = 1466 Score = 214 bits (108), Expect = 3e-52 Identities = 195/223 (87%), Gaps = 1/223 (0%) Strand = Plus / Minus Query: 401 gttgctctgtgaaggtcggacacaaacatcagccgcctctgcaaaattgccgcgatgaag 460 |||| |||||| || || || |||| |||||||||||||||||| ||||| || ||||| Sbjct: 1065 gttgatctgtggagatcagagacaaccatcagccgcctctgcaagattgctgccatgaaa 1006 Query: 461 aggaaaatagaacacatgccgaacatgacagcgattgggaaggcattcacattgtaaagc 520 |||||||||| ||||||||| |||||||||| ||| ||||| ||||||||||||||||| Sbjct: 1005 aggaaaatagcacacatgccaaacatgacagtgatggggaatgcattcacattgtaaaga 946 Query: 521 accacacatacaaacaggttaagtggtatgcggaagaaattcatgatagtgcttctcgcc 580 |||||||| ||||||||||| ||||||||||||||||| |||||||| |||||||| ||| Sbjct: 945 accacacaaacaaacaggttgagtggtatgcggaagaagttcatgatcgtgcttcttgcc 886 Query: 581 tcctcnggggatatattgagatctcattttcatgattgatggc 623 ||||| || ||||| || || ||||| ||||||||||||||| Sbjct: 885 tcctca-ggaatatactgggacctcatcttcatgattgatggc 844 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 201 ccgtgtcctctctcctgacaaaactgaat 229 |||||| |||||||||||||||| ||||| Sbjct: 1280 ccgtgtactctctcctgacaaaaatgaat 1252
>gb|BT018754.1| Zea mays clone EL01N0523E04.d mRNA sequence Length = 1723 Score = 180 bits (91), Expect = 4e-42 Identities = 175/202 (86%), Gaps = 1/202 (0%) Strand = Plus / Minus Query: 422 acaaacatcagccgcctctgcaaaattgccgcgatgaagaggaaaatagaacacatgccg 481 |||| ||||||||| |||||||| ||||| || ||||||||||| ||||||||||| ||| Sbjct: 1414 acaaccatcagccgtctctgcaagattgctgccatgaagaggaagatagaacacatcccg 1355 Query: 482 aacatgacagcgattgggaaggcattcacattgtaaagcaccacacatacaaacaggtta 541 |||||||||| ||| ||||| || ||||||||||||||||||||||| ||||| | ||| Sbjct: 1354 aacatgacagtgatagggaatgcgttcacattgtaaagcaccacacaaacaaataagttg 1295 Query: 542 agtggtatgcggaagaaattcatgatagtgcttctcgcctcctcnggggatatattgaga 601 || || |||||||||||||||||||| |||||||| || ||||| || || || ||||| Sbjct: 1294 agagggatgcggaagaaattcatgattgtgcttcttgcttcctca-ggaatgtactgaga 1236 Query: 602 tctcattttcatgattgatggc 623 ||||| ||||||||||||||| Sbjct: 1235 cctcatcttcatgattgatggc 1214
>gb|AY105578.1| Zea mays PCO062070 mRNA sequence Length = 579 Score = 180 bits (91), Expect = 4e-42 Identities = 172/198 (86%), Gaps = 1/198 (0%) Strand = Plus / Minus Query: 422 acaaacatcagccgcctctgcaaaattgccgcgatgaagaggaaaatagaacacatgccg 481 |||| ||||||||| |||||||| ||||| || ||||||||||| ||||||||||| || Sbjct: 199 acaaccatcagccgtctctgcaagattgctgccatgaagaggaagatagaacacatccca 140 Query: 482 aacatgacagcgattgggaaggcattcacattgtaaagcaccacacatacaaacaggtta 541 |||||||||| ||| ||||| |||||||| ||||||||||||||||| ||||| | ||| Sbjct: 139 aacatgacagtgatagggaatgcattcacgttgtaaagcaccacacaaacaaataagttg 80 Query: 542 agtggtatgcggaagaaattcatgatagtgcttctcgcctcctcnggggatatattgaga 601 || |||||||||||||| |||||||| ||||||||||| ||||| || || || ||||| Sbjct: 79 agcggtatgcggaagaagttcatgattgtgcttctcgcttcctca-ggaatgtactgaga 21 Query: 602 tctcattttcatgattga 619 |||||| ||||||||||| Sbjct: 20 tctcatcttcatgattga 3
>gb|AY106971.1| Zea mays PCO062071 mRNA sequence Length = 570 Score = 167 bits (84), Expect = 5e-38 Identities = 144/164 (87%) Strand = Plus / Minus Query: 422 acaaacatcagccgcctctgcaaaattgccgcgatgaagaggaaaatagaacacatgccg 481 |||| ||||||||| |||||||| ||||| || ||||||||||| ||||||||||| ||| Sbjct: 181 acaaccatcagccgtctctgcaagattgctgccatgaagaggaagatagaacacatcccg 122 Query: 482 aacatgacagcgattgggaaggcattcacattgtaaagcaccacacatacaaacaggtta 541 |||||||||| ||| ||||| || ||||||||||||||||||||||| ||||| | ||| Sbjct: 121 aacatgacagtgatagggaatgcgttcacattgtaaagcaccacacaaacaaataagttg 62 Query: 542 agtggtatgcggaagaaattcatgatagtgcttctcgcctcctc 585 || || |||||||||||||||||||| |||||||| || ||||| Sbjct: 61 agcgggatgcggaagaaattcatgattgtgcttcttgcttcctc 18
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 151 bits (76), Expect = 3e-33 Identities = 106/115 (92%), Gaps = 1/115 (0%) Strand = Plus / Minus Query: 509 acattgtaaagcaccacacatacaaacaggttaagtggtatgcggaagaaattcatgata 568 |||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||| Sbjct: 824071 acattgtaaagcaccacacaaacaaacaagttcagtggtatgcggaagaaattcatgatt 824012 Query: 569 gtgcttctcgcctcctcnggggatatattgagatctcattttcatgattgatggc 623 |||||||| |||||||| || ||||||||||||||||| ||||||||||||||| Sbjct: 824011 gtgcttcttgcctcctca-ggaatatattgagatctcatcttcatgattgatggc 823958 Score = 93.7 bits (47), Expect = 7e-16 Identities = 89/103 (86%) Strand = Plus / Minus Query: 408 tgtgaaggtcggacacaaacatcagccgcctctgcaaaattgccgcgatgaagaggaaaa 467 |||| ||||| || |||| ||| ||||| ||||||| |||||||| ||||||||||| | Sbjct: 824258 tgtgtaggtcagaaacaaccattagccgtctctgcaggattgccgccatgaagaggaaga 824199 Query: 468 tagaacacatgccgaacatgacagcgattgggaaggcattcac 510 ||||||||||||| |||||||||| ||| ||||| |||||||| Sbjct: 824198 tagaacacatgccaaacatgacagtgatagggaatgcattcac 824156
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 151 bits (76), Expect = 3e-33 Identities = 106/115 (92%), Gaps = 1/115 (0%) Strand = Plus / Minus Query: 509 acattgtaaagcaccacacatacaaacaggttaagtggtatgcggaagaaattcatgata 568 |||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||| Sbjct: 824069 acattgtaaagcaccacacaaacaaacaagttcagtggtatgcggaagaaattcatgatt 824010 Query: 569 gtgcttctcgcctcctcnggggatatattgagatctcattttcatgattgatggc 623 |||||||| |||||||| || ||||||||||||||||| ||||||||||||||| Sbjct: 824009 gtgcttcttgcctcctca-ggaatatattgagatctcatcttcatgattgatggc 823956 Score = 93.7 bits (47), Expect = 7e-16 Identities = 89/103 (86%) Strand = Plus / Minus Query: 408 tgtgaaggtcggacacaaacatcagccgcctctgcaaaattgccgcgatgaagaggaaaa 467 |||| ||||| || |||| ||| ||||| ||||||| |||||||| ||||||||||| | Sbjct: 824256 tgtgtaggtcagaaacaaccattagccgtctctgcaggattgccgccatgaagaggaaga 824197 Query: 468 tagaacacatgccgaacatgacagcgattgggaaggcattcac 510 ||||||||||||| |||||||||| ||| ||||| |||||||| Sbjct: 824196 tagaacacatgccaaacatgacagtgatagggaatgcattcac 824154
>gb|AC134237.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0090O10, complete sequence Length = 162132 Score = 151 bits (76), Expect = 3e-33 Identities = 106/115 (92%), Gaps = 1/115 (0%) Strand = Plus / Minus Query: 509 acattgtaaagcaccacacatacaaacaggttaagtggtatgcggaagaaattcatgata 568 |||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||| Sbjct: 119616 acattgtaaagcaccacacaaacaaacaagttcagtggtatgcggaagaaattcatgatt 119557 Query: 569 gtgcttctcgcctcctcnggggatatattgagatctcattttcatgattgatggc 623 |||||||| |||||||| || ||||||||||||||||| ||||||||||||||| Sbjct: 119556 gtgcttcttgcctcctca-ggaatatattgagatctcatcttcatgattgatggc 119503 Score = 93.7 bits (47), Expect = 7e-16 Identities = 89/103 (86%) Strand = Plus / Minus Query: 408 tgtgaaggtcggacacaaacatcagccgcctctgcaaaattgccgcgatgaagaggaaaa 467 |||| ||||| || |||| ||| ||||| ||||||| |||||||| ||||||||||| | Sbjct: 119803 tgtgtaggtcagaaacaaccattagccgtctctgcaggattgccgccatgaagaggaaga 119744 Query: 468 tagaacacatgccgaacatgacagcgattgggaaggcattcac 510 ||||||||||||| |||||||||| ||| ||||| |||||||| Sbjct: 119743 tagaacacatgccaaacatgacagtgatagggaatgcattcac 119701
>gb|AC051634.6| Oryza sativa chromosome 10 BAC OSJNBb0018B10 genomic sequence, complete sequence Length = 135789 Score = 119 bits (60), Expect = 1e-23 Identities = 102/115 (88%), Gaps = 1/115 (0%) Strand = Plus / Minus Query: 509 acattgtaaagcaccacacatacaaacaggttaagtggtatgcggaagaaattcatgata 568 ||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||||| Sbjct: 32280 acattgtaaagaaccacacaaacaaacaggttgagtggtatgcggaagaagttcatgatc 32221 Query: 569 gtgcttctcgcctcctcnggggatatattgagatctcattttcatgattgatggc 623 |||||||| |||||||| || ||||| || || ||||| ||||||||||||||| Sbjct: 32220 gtgcttcttgcctcctca-ggaatatactgggacctcatcttcatgattgatggc 32167 Score = 99.6 bits (50), Expect = 1e-17 Identities = 95/110 (86%) Strand = Plus / Minus Query: 401 gttgctctgtgaaggtcggacacaaacatcagccgcctctgcaaaattgccgcgatgaag 460 |||| |||||| || || || |||| |||||||||||||||||| ||||| || ||||| Sbjct: 32515 gttgatctgtggagatcagagacaaccatcagccgcctctgcaagattgctgccatgaaa 32456 Query: 461 aggaaaatagaacacatgccgaacatgacagcgattgggaaggcattcac 510 |||||||||| ||||||||| |||||||||| ||| ||||| |||||||| Sbjct: 32455 aggaaaatagcacacatgccaaacatgacagtgatggggaatgcattcac 32406 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 201 ccgtgtcctctctcctgacaaaactgaat 229 |||||| |||||||||||||||| ||||| Sbjct: 32836 ccgtgtactctctcctgacaaaaatgaat 32808
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 119 bits (60), Expect = 1e-23 Identities = 102/115 (88%), Gaps = 1/115 (0%) Strand = Plus / Minus Query: 509 acattgtaaagcaccacacatacaaacaggttaagtggtatgcggaagaaattcatgata 568 ||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||||| Sbjct: 19575089 acattgtaaagaaccacacaaacaaacaggttgagtggtatgcggaagaagttcatgatc 19575030 Query: 569 gtgcttctcgcctcctcnggggatatattgagatctcattttcatgattgatggc 623 |||||||| |||||||| || ||||| || || ||||| ||||||||||||||| Sbjct: 19575029 gtgcttcttgcctcctca-ggaatatactgggacctcatcttcatgattgatggc 19574976 Score = 99.6 bits (50), Expect = 1e-17 Identities = 95/110 (86%) Strand = Plus / Minus Query: 401 gttgctctgtgaaggtcggacacaaacatcagccgcctctgcaaaattgccgcgatgaag 460 |||| |||||| || || || |||| |||||||||||||||||| ||||| || ||||| Sbjct: 19575324 gttgatctgtggagatcagagacaaccatcagccgcctctgcaagattgctgccatgaaa 19575265 Query: 461 aggaaaatagaacacatgccgaacatgacagcgattgggaaggcattcac 510 |||||||||| ||||||||| |||||||||| ||| ||||| |||||||| Sbjct: 19575264 aggaaaatagcacacatgccaaacatgacagtgatggggaatgcattcac 19575215 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 201 ccgtgtcctctctcctgacaaaactgaat 229 |||||| |||||||||||||||| ||||| Sbjct: 19575645 ccgtgtactctctcctgacaaaaatgaat 19575617
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 119 bits (60), Expect = 1e-23 Identities = 102/115 (88%), Gaps = 1/115 (0%) Strand = Plus / Minus Query: 509 acattgtaaagcaccacacatacaaacaggttaagtggtatgcggaagaaattcatgata 568 ||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||||| Sbjct: 19586365 acattgtaaagaaccacacaaacaaacaggttgagtggtatgcggaagaagttcatgatc 19586306 Query: 569 gtgcttctcgcctcctcnggggatatattgagatctcattttcatgattgatggc 623 |||||||| |||||||| || ||||| || || ||||| ||||||||||||||| Sbjct: 19586305 gtgcttcttgcctcctca-ggaatatactgggacctcatcttcatgattgatggc 19586252 Score = 99.6 bits (50), Expect = 1e-17 Identities = 95/110 (86%) Strand = Plus / Minus Query: 401 gttgctctgtgaaggtcggacacaaacatcagccgcctctgcaaaattgccgcgatgaag 460 |||| |||||| || || || |||| |||||||||||||||||| ||||| || ||||| Sbjct: 19586600 gttgatctgtggagatcagagacaaccatcagccgcctctgcaagattgctgccatgaaa 19586541 Query: 461 aggaaaatagaacacatgccgaacatgacagcgattgggaaggcattcac 510 |||||||||| ||||||||| |||||||||| ||| ||||| |||||||| Sbjct: 19586540 aggaaaatagcacacatgccaaacatgacagtgatggggaatgcattcac 19586491 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 201 ccgtgtcctctctcctgacaaaactgaat 229 |||||| |||||||||||||||| ||||| Sbjct: 19586921 ccgtgtactctctcctgacaaaaatgaat 19586893
>emb|AJ843130.1| Plantago major partial mRNA for putative transport protein (putative transporter gene) Length = 942 Score = 77.8 bits (39), Expect = 4e-11 Identities = 108/130 (83%), Gaps = 1/130 (0%) Strand = Plus / Minus Query: 494 attgggaaggcattcacattgtaaagcaccacacatacaaacaggttaagtggtatgcgg 553 |||||||| || || |||||||| ||||| | || ||||| | ||| || || |||||| Sbjct: 390 attgggaatgcgttaacattgtatagcacgatgcaaacaaagatgttgagagggatgcgg 331 Query: 554 aagaaattcatgatagtgcttctcgcctcctcnggggatatattgagatctcattttcat 613 ||||| |||||||||||||||| ||||||||| ||||||||||| || ||||| ||||| Sbjct: 330 aagaagttcatgatagtgcttcgcgcctcctca-gggatatattgggacctcatcttcat 272 Query: 614 gattgatggc 623 || |||||| Sbjct: 271 aatggatggc 262
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 63.9 bits (32), Expect = 6e-07 Identities = 68/80 (85%) Strand = Plus / Minus Query: 422 acaaacatcagccgcctctgcaaaattgccgcgatgaagaggaaaatagaacacatgccg 481 |||| ||| ||||| ||||||| |||||||| ||||||| || |||||||||||||| Sbjct: 33556569 acaaccattagccgtctctgcaggattgccgccatgaagacaaacatagaacacatgcca 33556510 Query: 482 aacatgacagcgattgggaa 501 |||||||||| ||| ||||| Sbjct: 33556509 aacatgacagtgatagggaa 33556490
>emb|AL606685.3|OSJN00090 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0071I13, complete sequence Length = 152264 Score = 63.9 bits (32), Expect = 6e-07 Identities = 68/80 (85%) Strand = Plus / Minus Query: 422 acaaacatcagccgcctctgcaaaattgccgcgatgaagaggaaaatagaacacatgccg 481 |||| ||| ||||| ||||||| |||||||| ||||||| || |||||||||||||| Sbjct: 132858 acaaccattagccgtctctgcaggattgccgccatgaagacaaacatagaacacatgcca 132799 Query: 482 aacatgacagcgattgggaa 501 |||||||||| ||| ||||| Sbjct: 132798 aacatgacagtgatagggaa 132779
>emb|BX818558.1|CNS0ACHO Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL85ZE01 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 716 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/86 (84%), Gaps = 1/86 (1%) Strand = Plus / Minus Query: 538 gttaagtggtatgcggaagaaattcatgatagtgcttctcgcctcctcnggggatatatt 597 ||||||||| |||||||| ||||||||||| |||||||| || ||||| || || |||| Sbjct: 306 gttaagtgggatgcggaaaaaattcatgatggtgcttctagcttcctct-ggaatgtatt 248 Query: 598 gagatctcattttcatgattgatggc 623 | |||||||| ||||| || |||||| Sbjct: 247 gcgatctcatcttcattatagatggc 222
>ref|NM_105140.2| Arabidopsis thaliana unknown protein AT1G64650 mRNA, complete cds Length = 1755 Score = 54.0 bits (27), Expect = 6e-04 Identities = 69/82 (84%), Gaps = 1/82 (1%) Strand = Plus / Minus Query: 542 agtggtatgcggaagaaattcatgatagtgcttctcgcctcctcnggggatatattgaga 601 ||||| |||||||| ||||||||||| |||||||| || ||||| || || ||||| || Sbjct: 1246 agtgggatgcggaaaaaattcatgatggtgcttctagcttcctct-ggaatgtattgcga 1188 Query: 602 tctcattttcatgattgatggc 623 |||||| ||||| || |||||| Sbjct: 1187 tctcatcttcattatagatggc 1166
>gb|BT012268.1| Arabidopsis thaliana At1g64650 gene, complete cds Length = 1389 Score = 54.0 bits (27), Expect = 6e-04 Identities = 69/82 (84%), Gaps = 1/82 (1%) Strand = Plus / Minus Query: 542 agtggtatgcggaagaaattcatgatagtgcttctcgcctcctcnggggatatattgaga 601 ||||| |||||||| ||||||||||| |||||||| || ||||| || || ||||| || Sbjct: 1187 agtgggatgcggaaaaaattcatgatggtgcttctagcttcctct-ggaatgtattgcga 1129 Query: 602 tctcattttcatgattgatggc 623 |||||| ||||| || |||||| Sbjct: 1128 tctcatcttcattatagatggc 1107
>gb|BT011624.1| Arabidopsis thaliana At1g64650 mRNA, complete cds Length = 1601 Score = 54.0 bits (27), Expect = 6e-04 Identities = 69/82 (84%), Gaps = 1/82 (1%) Strand = Plus / Minus Query: 542 agtggtatgcggaagaaattcatgatagtgcttctcgcctcctcnggggatatattgaga 601 ||||| |||||||| ||||||||||| |||||||| || ||||| || || ||||| || Sbjct: 1233 agtgggatgcggaaaaaattcatgatggtgcttctagcttcctct-ggaatgtattgcga 1175 Query: 602 tctcattttcatgattgatggc 623 |||||| ||||| || |||||| Sbjct: 1174 tctcatcttcattatagatggc 1153
>emb|BX815264.1|CNS0ACZ6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS47ZG03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1676 Score = 54.0 bits (27), Expect = 6e-04 Identities = 69/82 (84%), Gaps = 1/82 (1%) Strand = Plus / Minus Query: 542 agtggtatgcggaagaaattcatgatagtgcttctcgcctcctcnggggatatattgaga 601 ||||| |||||||| ||||||||||| |||||||| || ||||| || || ||||| || Sbjct: 1202 agtgggatgcggaaaaaattcatgatggtgcttctagcttcctct-ggaatgtattgcga 1144 Query: 602 tctcattttcatgattgatggc 623 |||||| ||||| || |||||| Sbjct: 1143 tctcatcttcattatagatggc 1122
>emb|BX817883.1|CNS0ACJH Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL47ZD08 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 580 Score = 54.0 bits (27), Expect = 6e-04 Identities = 69/82 (84%), Gaps = 1/82 (1%) Strand = Plus / Minus Query: 542 agtggtatgcggaagaaattcatgatagtgcttctcgcctcctcnggggatatattgaga 601 ||||| |||||||| ||||||||||| |||||||| || ||||| || || ||||| || Sbjct: 185 agtgggatgcggaaaaaattcatgatggtgcttctagcttcctct-ggaatgtattgcga 127 Query: 602 tctcattttcatgattgatggc 623 |||||| ||||| || |||||| Sbjct: 126 tctcatcttcattatagatggc 105
>gb|AC009519.4|AC009519 Genomic sequence for Arabidopsis thaliana BAC F1N19 from chromosome I, complete sequence Length = 113172 Score = 54.0 bits (27), Expect = 6e-04 Identities = 69/82 (84%), Gaps = 1/82 (1%) Strand = Plus / Plus Query: 542 agtggtatgcggaagaaattcatgatagtgcttctcgcctcctcnggggatatattgaga 601 ||||| |||||||| ||||||||||| |||||||| || ||||| || || ||||| || Sbjct: 93001 agtgggatgcggaaaaaattcatgatggtgcttctagcttcctct-ggaatgtattgcga 93059 Query: 602 tctcattttcatgattgatggc 623 |||||| ||||| || |||||| Sbjct: 93060 tctcatcttcattatagatggc 93081
>gb|AC007864.5| Trypanosoma brucei chromosome 2 clone RPCI93-28H13, complete sequence Length = 160498 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 514 gtaaagcaccacacatacaaaca 536 ||||||||||||||||||||||| Sbjct: 80588 gtaaagcaccacacatacaaaca 80566
>gb|AE017150.2| Trypanosoma brucei chromosome 2, complete sequence Length = 1193948 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 514 gtaaagcaccacacatacaaaca 536 ||||||||||||||||||||||| Sbjct: 696917 gtaaagcaccacacatacaaaca 696895
>gb|BC076954.1| Xenopus tropicalis MGC89373 protein, mRNA (cDNA clone MGC:89373 IMAGE:6988640), complete cds Length = 2765 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 168 ctgtgcagtgtatatatctcaa 189 |||||||||||||||||||||| Sbjct: 2281 ctgtgcagtgtatatatctcaa 2260
>ref|NM_001005060.1| Xenopus tropicalis MGC89373 protein (MGC89373), mRNA Length = 2765 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 168 ctgtgcagtgtatatatctcaa 189 |||||||||||||||||||||| Sbjct: 2281 ctgtgcagtgtatatatctcaa 2260
>emb|CR942408.2| Xenopus tropicalis finished cDNA, clone TGas140j02 Length = 2375 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 168 ctgtgcagtgtatatatctcaa 189 |||||||||||||||||||||| Sbjct: 2265 ctgtgcagtgtatatatctcaa 2244
>emb|AJ508372.1|FHE508372 Fasciola hepatica microsatellite DNA, clone FH23 Length = 571 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 456 tgaagaggaaaatagaacaca 476 ||||||||||||||||||||| Sbjct: 45 tgaagaggaaaatagaacaca 25
>emb|CR762487.7| Zebrafish DNA sequence from clone CH211-197G14 in linkage group 13, complete sequence Length = 219918 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 245 aacaaagcaaactaaactggg 265 ||||||||||||||||||||| Sbjct: 172777 aacaaagcaaactaaactggg 172757
>gb|AC116611.4| Homo sapiens BAC clone RP13-581D7 from 4, complete sequence Length = 165959 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 390 ctgtggccttagttgctctgt 410 ||||||||||||||||||||| Sbjct: 158532 ctgtggccttagttgctctgt 158512
>gb|AC133528.4| Homo sapiens BAC clone RP11-367H1 from 2, complete sequence Length = 151700 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 378 ctgctgtcatctctgtggcct 398 ||||||||||||||||||||| Sbjct: 148259 ctgctgtcatctctgtggcct 148239
>gb|AC151278.2| Mus musculus BAC clone RP24-164I15 from chromosome 17, complete sequence Length = 175960 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 243 ctaacaaagcaaactaaactg 263 ||||||||||||||||||||| Sbjct: 51689 ctaacaaagcaaactaaactg 51709
>emb|BX072530.5| Zebrafish DNA sequence from clone DKEY-221K19, complete sequence Length = 167009 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 245 aacaaagcaaactaaactggg 265 ||||||||||||||||||||| Sbjct: 1040 aacaaagcaaactaaactggg 1020
>gb|AC174073.1| Homo sapiens chromosome 4 clone WI2-912C7, complete sequence Length = 41424 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 390 ctgtggccttagttgctctgt 410 ||||||||||||||||||||| Sbjct: 25865 ctgtggccttagttgctctgt 25885
>gb|AC121588.2| Mus musculus chromosome 3 clone RP23-275K22, complete sequence Length = 189679 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 500 aaggcattcacattgtaaag 519 |||||||||||||||||||| Sbjct: 149344 aaggcattcacattgtaaag 149363
>gb|AC146075.3| Pan troglodytes BAC clone RP43-15H6 from 7, complete sequence Length = 174752 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 373 atcttctgctgtcatctctgtggc 396 |||||||||| ||||||||||||| Sbjct: 32780 atcttctgctttcatctctgtggc 32757
>emb|CR933563.5| Wallaby DNA sequence from clone MEKBa-325O12, complete sequence Length = 179531 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 368 ggctcatcttctgctgtcatctct 391 ||||||||||||| |||||||||| Sbjct: 28086 ggctcatcttctgatgtcatctct 28063
>gb|AC004538.1| Homo sapiens PAC clone RP5-887P4 from 7, complete sequence Length = 83079 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 373 atcttctgctgtcatctctgtggc 396 |||||||||| ||||||||||||| Sbjct: 76326 atcttctgctttcatctctgtggc 76349
>gb|AC145467.1| Pan troglodytes BAC clone RP43-24J12 from 7, complete sequence Length = 50531 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 373 atcttctgctgtcatctctgtggc 396 |||||||||| ||||||||||||| Sbjct: 16534 atcttctgctttcatctctgtggc 16511
>gb|AC118724.18| Mus musculus, clone RP24-160H20, complete sequence Length = 197860 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 gagggaaaatacagatctgg 149 |||||||||||||||||||| Sbjct: 74773 gagggaaaatacagatctgg 74792
>gb|AC132050.4| Rattus norvegicus 20 BAC CH230-118G13 (Children's Hospital Oakland Research Institute) complete sequence Length = 247624 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 tctgctgtcatctctgtggc 396 |||||||||||||||||||| Sbjct: 172436 tctgctgtcatctctgtggc 172417
>gb|AC020701.8| Homo sapiens BAC clone RP11-200K10 from 4, complete sequence Length = 129572 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 ttggagactgttccatgccc 326 |||||||||||||||||||| Sbjct: 9039 ttggagactgttccatgccc 9058
>dbj|AK043335.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:A730086D24 product:unclassifiable, full insert sequence Length = 3369 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 gtgcagtgtatatatctcaa 189 |||||||||||||||||||| Sbjct: 214 gtgcagtgtatatatctcaa 195
>gb|AC154639.2| Mus musculus BAC clone RP23-306D9 from chromosome 13, complete sequence Length = 187693 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 592 tatattgagatctcattttc 611 |||||||||||||||||||| Sbjct: 109641 tatattgagatctcattttc 109622
>emb|BX649596.8| Zebrafish DNA sequence from clone CH211-69P4 in linkage group 14, complete sequence Length = 181055 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 602 tctcattttcatgattgatg 621 |||||||||||||||||||| Sbjct: 3309 tctcattttcatgattgatg 3290
>gb|AC092580.3| Homo sapiens BAC clone RP11-16D24 from 2, complete sequence Length = 120492 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 tcaagaggttggatttaaat 92 |||||||||||||||||||| Sbjct: 2509 tcaagaggttggatttaaat 2528
>dbj|AK110390.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-165-E03, full insert sequence Length = 2963 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 476 atgccgaacatgacagcgat 495 |||||||||||||||||||| Sbjct: 1136 atgccgaacatgacagcgat 1117
>emb|AL512360.2|CNS07EF9 Human chromosome 14 DNA sequence BAC R-737F10 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 192972 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 552 ggaagaaattcatgatagtgcttc 575 |||||||| ||||||||||||||| Sbjct: 165698 ggaagaaactcatgatagtgcttc 165721
>gb|AC147267.6| Mus musculus BAC clone RP24-263E13 from chromosome 3, complete sequence Length = 155979 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 500 aaggcattcacattgtaaag 519 |||||||||||||||||||| Sbjct: 143101 aaggcattcacattgtaaag 143082
>gb|AC161879.5| Mus musculus BAC clone RP23-264A15 from chromosome 1, complete sequence Length = 206995 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 gtgcagtgtatatatctcaa 189 |||||||||||||||||||| Sbjct: 157438 gtgcagtgtatatatctcaa 157457 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,721,404 Number of Sequences: 3902068 Number of extensions: 5721404 Number of successful extensions: 111379 Number of sequences better than 10.0: 54 Number of HSP's better than 10.0 without gapping: 54 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 111109 Number of HSP's gapped (non-prelim): 255 length of query: 623 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 600 effective length of database: 17,143,297,704 effective search space: 10285978622400 effective search space used: 10285978622400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)