ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags16p23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1T103_MOUSE (Q9CRD2) Tetratricopeptide repeat protein KIAA0103 44 4e-04
2T103_HUMAN (Q15006) Tetratricopeptide repeat protein KIAA0103 44 4e-04

>T103_MOUSE (Q9CRD2) Tetratricopeptide repeat protein KIAA0103|
          Length = 297

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 22/53 (41%), Positives = 35/53 (66%)
 Frame = -2

Query: 491 KVLYTLGGLENLQTAKKYYASTIQLTGGKNTRALFGVCLCSAAISQLTKGRNK 333
           +V YT GGLENL+ ++KY+A  ++L   +N RALFG+ + ++ I+   K   K
Sbjct: 197 EVKYTQGGLENLELSRKYFAQALKL-NNRNMRALFGLYMSASHIASNPKASAK 248



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>T103_HUMAN (Q15006) Tetratricopeptide repeat protein KIAA0103|
          Length = 297

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 22/53 (41%), Positives = 35/53 (66%)
 Frame = -2

Query: 491 KVLYTLGGLENLQTAKKYYASTIQLTGGKNTRALFGVCLCSAAISQLTKGRNK 333
           +V YT GGLENL+ ++KY+A  ++L   +N RALFG+ + ++ I+   K   K
Sbjct: 197 EVKYTQGGLENLELSRKYFAQALKL-NNRNMRALFGLYMSASHIASNPKASAK 248


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,760,793
Number of Sequences: 219361
Number of extensions: 1426664
Number of successful extensions: 3404
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3403
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6029593548
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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