ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags16p23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_463970.1| Oryza sativa (japonica cultivar-group), mRNA 172 9e-40
2dbj|AK105450.1| Oryza sativa (japonica cultivar-group) cDNA clon... 172 9e-40
3dbj|AK102416.1| Oryza sativa (japonica cultivar-group) cDNA clon... 172 9e-40
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 98 4e-17
5dbj|AP005311.3| Oryza sativa (japonica cultivar-group) genomic D... 98 4e-17
6gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 46 0.14
7emb|CR708776.2|CNS0G9UC Tetraodon nigroviridis full-length cDNA 44 0.56
8emb|CR701463.2|CNS0G477 Tetraodon nigroviridis full-length cDNA 44 0.56
9emb|CR676870.2|CNS0FL8I Tetraodon nigroviridis full-length cDNA 44 0.56
10emb|CR661271.2|CNS0F97H Tetraodon nigroviridis full-length cDNA 44 0.56
11emb|AL162253.17| Human DNA sequence from clone RP11-574F11 on ch... 44 0.56
12gb|AC078871.16| Homo sapiens 12q BAC RP11-919C7 (Roswell Park Ca... 44 0.56
13emb|Z79596.1|CEC02C6 Caenorhabditis elegans Cosmid C02C6, comple... 44 0.56
14gb|AC127697.3| Mus musculus chromosome 15 clone RP24-83I10, comp... 42 2.2
15gb|AC006451.5| Homo sapiens PAC clone RP4-562A11 from 7, complet... 42 2.2
16gb|AC163739.2| Pan troglodytes BAC clone CH251-503F22 from chrom... 42 2.2
17dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
18dbj|AP002972.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
19dbj|AP003774.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 2.2
20dbj|AP001453.6| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 2.2
21emb|CT030154.8| Mouse DNA sequence from clone RP23-387H3 on chro... 42 2.2
22gb|BC109161.1| Mus musculus desmocollin 1, mRNA (cDNA clone MGC:... 40 8.8
23ref|XM_520699.1| PREDICTED: Pan troglodytes similar to lysine-de... 40 8.8
24gb|AC078977.6| Oryza sativa (japonica cultivar-group) chromosome... 40 8.8
25gb|AC154240.2| Mus musculus BAC clone RP24-170E23 from chromosom... 40 8.8
26gb|AC132314.3| Mus musculus BAC clone RP24-233C4 from chromosome... 40 8.8
27ref|NM_006648.3| Homo sapiens WNK lysine deficient protein kinas... 40 8.8
28gb|AC154384.2| Mus musculus BAC clone RP23-39K21 from chromosome... 40 8.8
29ref|XM_846883.1| PREDICTED: Canis familiaris similar to natural ... 40 8.8
30gb|AY128412.1| Mus musculus guanylate binding protein 5 (Gbp5) g... 40 8.8
31gb|DQ459071.1| Sorghum bicolor cultivar BTx623 clone BAC c0156b0... 40 8.8
32ref|XM_541326.2| PREDICTED: Canis familiaris similar to WNK lysi... 40 8.8
33gb|BC051027.1| Homo sapiens mRNA similar to serologically define... 40 8.8
34emb|AL663105.4| Human DNA sequence from clone RP4-743D20 on chro... 40 8.8
35emb|AL354991.11| Human DNA sequence from clone RP11-480F4 on chr... 40 8.8
36emb|AL162393.15| Human DNA sequence from clone RP11-534I8 on chr... 40 8.8
37emb|AL031121.5|HS495O10 Human DNA sequence from clone RP3-495O10... 40 8.8
38emb|AL031279.1|HS163O16 Human DNA sequence from clone RP1-163O16... 40 8.8
39emb|X97986.1|MMDESC1AB M.musculus mRNA for desmocollin type 1 40 8.8
40gb|AC091158.11| Mus musculus Strain C57BL6/J chromosome 6 BAC, R... 40 8.8
41emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete ... 40 8.8
42emb|BX640412.1| Bordetella pertussis strain Tohama I, complete g... 40 8.8
43emb|AJ242724.4|HSA242724 Homo sapiens mRNA for putative mitogen-... 40 8.8
44gb|AC126366.2| Homo sapiens chromosome 8, clone RP11-313A10, com... 40 8.8
45ref|NM_013504.2| Mus musculus desmocollin 1 (Dsc1), mRNA 40 8.8
46gb|AC100773.2| Homo sapiens chromosome 11, clone RP11-960D24, co... 40 8.8
47gb|AC015883.6| Homo sapiens chromosome 17, clone RP11-226M10, co... 40 8.8
48dbj|AK081826.1| Mus musculus 16 days embryo head cDNA, RIKEN ful... 40 8.8
49gb|AC010255.9|AC010255 Homo sapiens chromosome 5 clone CTC-441N1... 40 8.8
50dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
51gb|AC093927.3| Homo sapiens chromosome 3 clone RP11-81I24, compl... 40 8.8
52dbj|AK000694.1| Homo sapiens cDNA FLJ20687 fis, clone KAIA302, h... 40 8.8
53emb|AJ271663.1|CAR271663 Cicer arietinum partial mRNA for hypoth... 40 8.8
54gb|AF039702.1|AF039702 Homo sapiens antigen NY-CO-43 mRNA, compl... 40 8.8
55gb|AC130661.14| Mus musculus chromosome 12, clone RP23-337K17, c... 40 8.8
56dbj|AB051547.2| Homo sapiens mRNA for KIAA1760 protein, partial cds 40 8.8
57dbj|AP000744.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 8.8
58gb|AC140679.4| Mus musculus BAC clone RP24-511M8 from 1, complet... 40 8.8
59gb|BC109162.1| Mus musculus desmocollin 1, mRNA (cDNA clone IMAG... 40 8.8
60gb|AC102108.12| Mus musculus chromosome 3, clone RP23-100J23, co... 40 8.8
61gb|BC037965.1| Homo sapiens WNK lysine deficient protein kinase ... 40 8.8
62gb|AC138622.4| Mus musculus BAC clone RP23-100J15 from chromosom... 40 8.8
63emb|AL589661.21| Mouse DNA sequence from clone RP23-58B7 on chro... 40 8.8
64emb|AL671999.6| Mouse DNA sequence from clone RP23-149D11 on chr... 40 8.8
65gb|AF267169.4| Homo sapiens chromosome 8 clone RP11-317L5 map 8q... 40 8.8 
>ref|XM_463970.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1220

 Score =  172 bits (87), Expect = 9e-40
 Identities = 234/283 (82%)
 Strand = Plus / Minus

                                                                       
Query: 208 gatcaggagagcttcatgttcttcagcatgcccgcgacgagcgcctccatggacggggcg 267
           ||||||||||| ||||||||||||| || ||  | || ||| |||||| | ||||| || 
Sbjct: 918 gatcaggagagtttcatgttcttcaacaggctggtgatgagtgcctccttcgacggtgct 859

                                                                       
Query: 268 cgccgcttgtaatctttcatcagtgcctctgcggccaggctctgcagctccgagctctcc 327
           ||  |||||||||| ||||  ||||||||||  |||| ||||||||| || ||||| |||
Sbjct: 858 cgttgcttgtaatccttcaatagtgcctctgaagccaagctctgcagttctgagctttcc 799

                                                                       
Query: 328 tcctccttgttcctccctttggtcagctggctgatcgcggcgctgcacagacacacgcca 387
           || ||||| |||||||||||||||| |||  |||| || | ||| |||| ||||||||||
Sbjct: 798 tcttccttattcctccctttggtcaactgattgattgccgagctacacaaacacacgcca 739

                                                                       
Query: 388 aagagagctctcgtgttcttgcccccagtcaactggatcgtcgacgcgtagtacttttta 447
           ||||| ||||| || |||||||| ||||||||||| || || || || || || ||| ||
Sbjct: 738 aagagggctcttgtattcttgcctccagtcaactgtattgtagatgcataatattttcta 679

                                                      
Query: 448 gcggtttgaaggttttccaaaccacccagtgtgtacaaaacct 490
           || ||||||||||||||||||||||||| ||| |||| |||||
Sbjct: 678 gctgtttgaaggttttccaaaccacccattgtatacagaacct 636
to top
>dbj|AK105450.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-125-C01, full
           insert sequence
          Length = 1220

 Score =  172 bits (87), Expect = 9e-40
 Identities = 234/283 (82%)
 Strand = Plus / Minus

                                                                       
Query: 208 gatcaggagagcttcatgttcttcagcatgcccgcgacgagcgcctccatggacggggcg 267
           ||||||||||| ||||||||||||| || ||  | || ||| |||||| | ||||| || 
Sbjct: 918 gatcaggagagtttcatgttcttcaacaggctggtgatgagtgcctccttcgacggtgct 859

                                                                       
Query: 268 cgccgcttgtaatctttcatcagtgcctctgcggccaggctctgcagctccgagctctcc 327
           ||  |||||||||| ||||  ||||||||||  |||| ||||||||| || ||||| |||
Sbjct: 858 cgttgcttgtaatccttcaatagtgcctctgaagccaagctctgcagttctgagctttcc 799

                                                                       
Query: 328 tcctccttgttcctccctttggtcagctggctgatcgcggcgctgcacagacacacgcca 387
           || ||||| |||||||||||||||| |||  |||| || | ||| |||| ||||||||||
Sbjct: 798 tcttccttattcctccctttggtcaactgattgattgccgagctacacaaacacacgcca 739

                                                                       
Query: 388 aagagagctctcgtgttcttgcccccagtcaactggatcgtcgacgcgtagtacttttta 447
           ||||| ||||| || |||||||| ||||||||||| || || || || || || ||| ||
Sbjct: 738 aagagggctcttgtattcttgcctccagtcaactgtattgtagatgcataatattttcta 679

                                                      
Query: 448 gcggtttgaaggttttccaaaccacccagtgtgtacaaaacct 490
           || ||||||||||||||||||||||||| ||| |||| |||||
Sbjct: 678 gctgtttgaaggttttccaaaccacccattgtatacagaacct 636
to top
>dbj|AK102416.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093C05, full
            insert sequence
          Length = 2540

 Score =  172 bits (87), Expect = 9e-40
 Identities = 234/283 (82%)
 Strand = Plus / Minus

                                                                        
Query: 208  gatcaggagagcttcatgttcttcagcatgcccgcgacgagcgcctccatggacggggcg 267
            ||||||||||| ||||||||||||| || ||  | || ||| |||||| | ||||| || 
Sbjct: 2317 gatcaggagagtttcatgttcttcaacaggctggtgatgagtgcctccttcgacggtgct 2258

                                                                        
Query: 268  cgccgcttgtaatctttcatcagtgcctctgcggccaggctctgcagctccgagctctcc 327
            ||  |||||||||| ||||  ||||||||||  |||| ||||||||| || ||||| |||
Sbjct: 2257 cgttgcttgtaatccttcaatagtgcctctgaagccaagctctgcagttctgagctttcc 2198

                                                                        
Query: 328  tcctccttgttcctccctttggtcagctggctgatcgcggcgctgcacagacacacgcca 387
            || ||||| |||||||||||||||| |||  |||| || | ||| |||| ||||||||||
Sbjct: 2197 tcttccttattcctccctttggtcaactgattgattgccgagctacacaaacacacgcca 2138

                                                                        
Query: 388  aagagagctctcgtgttcttgcccccagtcaactggatcgtcgacgcgtagtacttttta 447
            ||||| ||||| || |||||||| ||||||||||| || || || || || || ||| ||
Sbjct: 2137 aagagggctcttgtattcttgcctccagtcaactgtattgtagatgcataatattttcta 2078

                                                       
Query: 448  gcggtttgaaggttttccaaaccacccagtgtgtacaaaacct 490
            || ||||||||||||||||||||||||| ||| |||| |||||
Sbjct: 2077 gctgtttgaaggttttccaaaccacccattgtatacagaacct 2035
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 97/113 (85%)
 Strand = Plus / Minus

                                                                           
Query: 378     acacacgccaaagagagctctcgtgttcttgcccccagtcaactggatcgtcgacgcgta 437
               ||||||||||||||| ||||| || |||||||| ||||||||||| || || || || ||
Sbjct: 1415338 acacacgccaaagagggctcttgtattcttgcctccagtcaactgtattgtagatgcata 1415279

                                                                    
Query: 438     gtactttttagcggtttgaaggttttccaaaccacccagtgtgtacaaaacct 490
                || ||| |||| ||||||||||||||||||||||||| ||| |||| |||||
Sbjct: 1415278 atattttctagctgtttgaaggttttccaaaccacccattgtatacagaacct 1415226



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 120/145 (82%)
 Strand = Plus / Minus

                                                                           
Query: 208     gatcaggagagcttcatgttcttcagcatgcccgcgacgagcgcctccatggacggggcg 267
               ||||||||||| ||||||||||||| || ||  | || ||| |||||| | ||||| || 
Sbjct: 1415610 gatcaggagagtttcatgttcttcaacaggctggtgatgagtgcctccttcgacggtgct 1415551

                                                                           
Query: 268     cgccgcttgtaatctttcatcagtgcctctgcggccaggctctgcagctccgagctctcc 327
               ||  |||||||||| ||||  ||||||||||  |||| ||||||||| || ||||| |||
Sbjct: 1415550 cgttgcttgtaatccttcaatagtgcctctgaagccaagctctgcagttctgagctttcc 1415491

                                        
Query: 328     tcctccttgttcctccctttggtca 352
               || ||||| ||||||||||||||||
Sbjct: 1415490 tcttccttattcctccctttggtca 1415466
to top
>dbj|AP005311.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0482F12
          Length = 147735

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 97/113 (85%)
 Strand = Plus / Minus

                                                                         
Query: 378   acacacgccaaagagagctctcgtgttcttgcccccagtcaactggatcgtcgacgcgta 437
             ||||||||||||||| ||||| || |||||||| ||||||||||| || || || || ||
Sbjct: 96610 acacacgccaaagagggctcttgtattcttgcctccagtcaactgtattgtagatgcata 96551

                                                                  
Query: 438   gtactttttagcggtttgaaggttttccaaaccacccagtgtgtacaaaacct 490
              || ||| |||| ||||||||||||||||||||||||| ||| |||| |||||
Sbjct: 96550 atattttctagctgtttgaaggttttccaaaccacccattgtatacagaacct 96498



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 120/145 (82%)
 Strand = Plus / Minus

                                                                         
Query: 208   gatcaggagagcttcatgttcttcagcatgcccgcgacgagcgcctccatggacggggcg 267
             ||||||||||| ||||||||||||| || ||  | || ||| |||||| | ||||| || 
Sbjct: 96882 gatcaggagagtttcatgttcttcaacaggctggtgatgagtgcctccttcgacggtgct 96823

                                                                         
Query: 268   cgccgcttgtaatctttcatcagtgcctctgcggccaggctctgcagctccgagctctcc 327
             ||  |||||||||| ||||  ||||||||||  |||| ||||||||| || ||||| |||
Sbjct: 96822 cgttgcttgtaatccttcaatagtgcctctgaagccaagctctgcagttctgagctttcc 96763

                                      
Query: 328   tcctccttgttcctccctttggtca 352
             || ||||| ||||||||||||||||
Sbjct: 96762 tcttccttattcctccctttggtca 96738
to top
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 350     tcagctggctgatcgcggcgctg 372
               |||||||||||||||||||||||
Sbjct: 3359354 tcagctggctgatcgcggcgctg 3359376
to top
>emb|CR708776.2|CNS0G9UC Tetraodon nigroviridis full-length cDNA
          Length = 1033

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 323 tctcctcctccttgttcctccc 344
           ||||||||||||||||||||||
Sbjct: 2   tctcctcctccttgttcctccc 23
to top
>emb|CR701463.2|CNS0G477 Tetraodon nigroviridis full-length cDNA
          Length = 515

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 323 tctcctcctccttgttcctccc 344
           ||||||||||||||||||||||
Sbjct: 44  tctcctcctccttgttcctccc 65
to top
>emb|CR676870.2|CNS0FL8I Tetraodon nigroviridis full-length cDNA
          Length = 968

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 323 tctcctcctccttgttcctccc 344
           ||||||||||||||||||||||
Sbjct: 33  tctcctcctccttgttcctccc 54
to top
>emb|CR661271.2|CNS0F97H Tetraodon nigroviridis full-length cDNA
          Length = 781

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 323 tctcctcctccttgttcctccc 344
           ||||||||||||||||||||||
Sbjct: 20  tctcctcctccttgttcctccc 41
to top
>emb|AL162253.17| Human DNA sequence from clone RP11-574F11 on chromosome 9 Contains the
             gene for B7-H1 protein (PD-L1), the gene for programmed
             death ligand 2 (PDL2) (PDCD1L2) and a novel gene, complete
             sequence
          Length = 146327

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 70    ctgtttcgtaaataaagtttta 91
             ||||||||||||||||||||||
Sbjct: 30701 ctgtttcgtaaataaagtttta 30680
to top
>gb|AC078871.16| Homo sapiens 12q BAC RP11-919C7 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 119238

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 93    aatgctgctggaaggatctgcc 114
             ||||||||||||||||||||||
Sbjct: 94295 aatgctgctggaaggatctgcc 94316
to top
>emb|Z79596.1|CEC02C6 Caenorhabditis elegans Cosmid C02C6, complete sequence
          Length = 43379

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 479  tgtacaaaaccttcaacaaaaa 500
            ||||||||||||||||||||||
Sbjct: 8222 tgtacaaaaccttcaacaaaaa 8201
to top
>gb|AC127697.3| Mus musculus chromosome 15 clone RP24-83I10, complete sequence
          Length = 205653

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 562    gcagaatcaggacaaggcattggct 586
              |||||||||||||||| ||||||||
Sbjct: 139628 gcagaatcaggacaagacattggct 139604
to top
>gb|AC006451.5| Homo sapiens PAC clone RP4-562A11 from 7, complete sequence
          Length = 145966

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 70    ctgtttcgtaaataaagtttt 90
             |||||||||||||||||||||
Sbjct: 91572 ctgtttcgtaaataaagtttt 91592
to top
>gb|AC163739.2| Pan troglodytes BAC clone CH251-503F22 from chromosome unknown,
             complete sequence
          Length = 220347

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 307   ctctgcagctccgagctctcc 327
             |||||||||||||||||||||
Sbjct: 68313 ctctgcagctccgagctctcc 68333
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 493      aacaaaaaataagaggcaaca 513
                |||||||||||||||||||||
Sbjct: 30884163 aacaaaaaataagaggcaaca 30884183
to top
>dbj|AP002972.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0638D12
          Length = 161277

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 493   aacaaaaaataagaggcaaca 513
             |||||||||||||||||||||
Sbjct: 84530 aacaaaaaataagaggcaaca 84550
to top
>dbj|AP003774.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-147G6, complete
             sequence
          Length = 166128

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 307   ctctgcagctccgagctctcc 327
             |||||||||||||||||||||
Sbjct: 66599 ctctgcagctccgagctctcc 66619
to top
>dbj|AP001453.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-783K16, complete
              sequence
          Length = 166356

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 307    ctctgcagctccgagctctcc 327
              |||||||||||||||||||||
Sbjct: 157779 ctctgcagctccgagctctcc 157799
to top
>emb|CT030154.8| Mouse DNA sequence from clone RP23-387H3 on chromosome 12, complete
             sequence
          Length = 213294

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 322   ctctcctcctccttgttcctccctt 346
             |||||||||||||| ||||||||||
Sbjct: 39976 ctctcctcctccttcttcctccctt 40000
to top
>gb|BC109161.1| Mus musculus desmocollin 1, mRNA (cDNA clone MGC:129348
            IMAGE:40047883), complete cds
          Length = 2689

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 299  cggccaggctctgcagctccgagctctcctcc 330
            |||||||||||||| ||||| ||| |||||||
Sbjct: 2468 cggccaggctctgctgctcctagcactcctcc 2437
to top
>ref|XM_520699.1| PREDICTED: Pan troglodytes similar to lysine-deficient protein kinase
            2; mitogen-activated protein kinase kinase kinase;
            serologically defined colon cancer antigen 43
            (LOC465240), mRNA
          Length = 5081

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 305  ggctctgcagctccgagctctcct 328
            ||||||||||||||||| ||||||
Sbjct: 2383 ggctctgcagctccgagatctcct 2360
to top
>gb|AC078977.6| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0496H07,
             complete sequence
          Length = 164477

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 254   ccatggacggggcgcgccgc 273
             ||||||||||||||||||||
Sbjct: 92783 ccatggacggggcgcgccgc 92764
to top
>gb|AC154240.2| Mus musculus BAC clone RP24-170E23 from chromosome 12, complete sequence
          Length = 160191

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 598    ctttgtcatttatatgaatcagaa 621
              ||||||||||||| ||||||||||
Sbjct: 118057 ctttgtcatttatttgaatcagaa 118080
to top
>gb|AC132314.3| Mus musculus BAC clone RP24-233C4 from chromosome 18, complete sequence
          Length = 156356

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 299   cggccaggctctgcagctccgagctctcctcc 330
             |||||||||||||| ||||| ||| |||||||
Sbjct: 72032 cggccaggctctgctgctcctagcactcctcc 72001
to top
>ref|NM_006648.3| Homo sapiens WNK lysine deficient protein kinase 2 (WNK2), mRNA
          Length = 6834

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 305  ggctctgcagctccgagctctcct 328
            ||||||||||||||||| ||||||
Sbjct: 5740 ggctctgcagctccgagatctcct 5717
to top
>gb|AC154384.2| Mus musculus BAC clone RP23-39K21 from chromosome 14, complete sequence
          Length = 242114

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 606    tttatatgaatcagaaatgttgag 629
              ||||||||| ||||||||||||||
Sbjct: 173730 tttatatgactcagaaatgttgag 173707
to top
>ref|XM_846883.1| PREDICTED: Canis familiaris similar to natural killer-tumor
            recognition sequence isoform a (LOC609597), mRNA
          Length = 6248

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 315  ctccgagctctcctcctcct 334
            ||||||||||||||||||||
Sbjct: 4938 ctccgagctctcctcctcct 4919
to top
>gb|AY128412.1| Mus musculus guanylate binding protein 5 (Gbp5) gene, complete cds
          Length = 31023

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 68   ggctgtttcgtaaataaagtttta 91
            |||||||| |||||||||||||||
Sbjct: 1330 ggctgtttggtaaataaagtttta 1307
to top
>gb|DQ459071.1| Sorghum bicolor cultivar BTx623 clone BAC c0156b06, complete sequence
          Length = 112592

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     agtgttgttttccttattgc 20
             ||||||||||||||||||||
Sbjct: 89718 agtgttgttttccttattgc 89737
to top
>ref|XM_541326.2| PREDICTED: Canis familiaris similar to WNK lysine deficient protein
            kinase 2 (LOC484210), mRNA
          Length = 4935

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 305  ggctctgcagctccgagctctcct 328
            ||||||||||||||||| ||||||
Sbjct: 4456 ggctctgcagctccgagatctcct 4433
to top
>gb|BC051027.1| Homo sapiens mRNA similar to serologically defined colon cancer
            antigen 43 (cDNA clone IMAGE:4417441)
          Length = 8362

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 305  ggctctgcagctccgagctctcct 328
            ||||||||||||||||| ||||||
Sbjct: 6193 ggctctgcagctccgagatctcct 6170
to top
>emb|AL663105.4| Human DNA sequence from clone RP4-743D20 on chromosome 1 Contains a
             novel gene and a CpG island, complete sequence
          Length = 157062

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 68    ggctgtttcgtaaataaagtttta 91
             |||||||| |||||||||||||||
Sbjct: 12040 ggctgttttgtaaataaagtttta 12017
to top
>emb|AL354991.11| Human DNA sequence from clone RP11-480F4 on chromosome 9 Contains part
             of the PRKWNK2 gene for protein kinase, lysine deficient 2
             (WNK2, NY-CO-43, SDCCAG43, P/OKcl.13), complete sequence
          Length = 36944

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 305   ggctctgcagctccgagctctcct 328
             ||||||||||||||||| ||||||
Sbjct: 25084 ggctctgcagctccgagatctcct 25061
to top
>emb|AL162393.15| Human DNA sequence from clone RP11-534I8 on chromosome 9 Contains a
             programmed cell death 2 (PDCD2) pseudogene, the 5' end of
             the gene for a novel C2H2 type zinc finger protein and two
             CpG islands, complete sequence
          Length = 184302

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 216   gagcttcatgttcttcagca 235
             ||||||||||||||||||||
Sbjct: 39473 gagcttcatgttcttcagca 39492
to top
>emb|AL031121.5|HS495O10 Human DNA sequence from clone RP3-495O10 on chromosome 6q26-27 Contains
              an RPL37A (60S Ribosomal Protein L37A) pseudogene and the
              3' end of the gene for a novel protein (FLJ32724), complete
              sequence
          Length = 187908

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 325    tcctcctccttgttcctccc 344
              ||||||||||||||||||||
Sbjct: 170208 tcctcctccttgttcctccc 170189
to top
>emb|AL031279.1|HS163O16 Human DNA sequence from clone RP1-163O16 on chromosome 1p35.1-36.13
             Contains CA repeat, STS, complete sequence
          Length = 135628

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 69    gctgtttcgtaaataaagttttac 92
             ||||||| ||||||||||||||||
Sbjct: 48909 gctgttttgtaaataaagttttac 48932
to top
>emb|X97986.1|MMDESC1AB M.musculus mRNA for desmocollin type 1
          Length = 2987

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 299  cggccaggctctgcagctccgagctctcctcc 330
            |||||||||||||| ||||| ||| |||||||
Sbjct: 2565 cggccaggctctgctgctcctagcactcctcc 2534
to top
>gb|AC091158.11| Mus musculus Strain C57BL6/J chromosome 6 BAC, RP23-109E8, Complete
              Sequence, complete sequence
          Length = 195048

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 328    tcctccttgttcctcccttt 347
              ||||||||||||||||||||
Sbjct: 188229 tcctccttgttcctcccttt 188248
to top
>emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete genome; segment 15/16
          Length = 343473

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 348    ggtcagctggctgatcgcgg 367
              ||||||||||||||||||||
Sbjct: 230795 ggtcagctggctgatcgcgg 230776
to top
>emb|BX640412.1| Bordetella pertussis strain Tohama I, complete genome; segment 2/12
          Length = 348171

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 348    ggtcagctggctgatcgcgg 367
              ||||||||||||||||||||
Sbjct: 323459 ggtcagctggctgatcgcgg 323440
to top
>emb|AJ242724.4|HSA242724 Homo sapiens mRNA for putative mitogen-activated protein kinase
            kinase kinase (PRKWNK2 gene), splice variant
            KIAA1760-related
          Length = 6894

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 305  ggctctgcagctccgagctctcct 328
            ||||||||||||||||| ||||||
Sbjct: 5851 ggctctgcagctccgagatctcct 5828
to top
>gb|AC126366.2| Homo sapiens chromosome 8, clone RP11-313A10, complete sequence
          Length = 170849

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 326    cctcctccttgttcctccct 345
              ||||||||||||||||||||
Sbjct: 125575 cctcctccttgttcctccct 125594
to top
>ref|NM_013504.2| Mus musculus desmocollin 1 (Dsc1), mRNA
          Length = 3222

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 299  cggccaggctctgcagctccgagctctcctcc 330
            |||||||||||||| ||||| ||| |||||||
Sbjct: 2539 cggccaggctctgctgctcctagcactcctcc 2508
to top
>gb|AC100773.2| Homo sapiens chromosome 11, clone RP11-960D24, complete sequence
          Length = 199549

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 595    tgactttgtcatttatatga 614
              ||||||||||||||||||||
Sbjct: 129399 tgactttgtcatttatatga 129380
to top
>gb|AC015883.6| Homo sapiens chromosome 17, clone RP11-226M10, complete sequence
          Length = 159777

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 217   agcttcatgttcttcagcat 236
             ||||||||||||||||||||
Sbjct: 23654 agcttcatgttcttcagcat 23673
to top
>dbj|AK081826.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
            library, clone:C130080B09 product:desmocollin 1, full
            insert sequence
          Length = 3222

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 299  cggccaggctctgcagctccgagctctcctcc 330
            |||||||||||||| ||||| ||| |||||||
Sbjct: 2539 cggccaggctctgctgctcctagcactcctcc 2508
to top
>gb|AC010255.9|AC010255 Homo sapiens chromosome 5 clone CTC-441N14, complete sequence
          Length = 215111

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 50     gaaataggaaacaaggaaggctgt 73
              |||||||||| |||||||||||||
Sbjct: 185763 gaaataggaaccaaggaaggctgt 185740
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5,
              complete sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 254    ccatggacggggcgcgccgc 273
              ||||||||||||||||||||
Sbjct: 888359 ccatggacggggcgcgccgc 888340
to top
>gb|AC093927.3| Homo sapiens chromosome 3 clone RP11-81I24, complete sequence
          Length = 183190

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 70     ctgtttcgtaaataaagttt 89
              ||||||||||||||||||||
Sbjct: 129919 ctgtttcgtaaataaagttt 129900
to top
>dbj|AK000694.1| Homo sapiens cDNA FLJ20687 fis, clone KAIA302, highly similar to
            AF039702 Homo sapiens antigen NY-CO-43 mRNA
          Length = 3255

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 305  ggctctgcagctccgagctctcct 328
            ||||||||||||||||| ||||||
Sbjct: 2130 ggctctgcagctccgagatctcct 2107
to top
>emb|AJ271663.1|CAR271663 Cicer arietinum partial mRNA for hypothetical protein
          Length = 562

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 385 ccaaagagagctctcgtgttcttgcccccagt 416
           |||||||||||||| || |||||||| |||||
Sbjct: 158 ccaaagagagctctggtattcttgcctccagt 127
to top
>gb|AF039702.1|AF039702 Homo sapiens antigen NY-CO-43 mRNA, complete cds
          Length = 1898

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 305  ggctctgcagctccgagctctcct 328
            ||||||||||||||||| ||||||
Sbjct: 1266 ggctctgcagctccgagatctcct 1243
to top
>gb|AC130661.14| Mus musculus chromosome 12, clone RP23-337K17, complete sequence
          Length = 199656

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 598    ctttgtcatttatatgaatcagaa 621
              ||||||||||||| ||||||||||
Sbjct: 190813 ctttgtcatttatttgaatcagaa 190790
to top
>dbj|AB051547.2| Homo sapiens mRNA for KIAA1760 protein, partial cds
          Length = 7792

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 305  ggctctgcagctccgagctctcct 328
            ||||||||||||||||| ||||||
Sbjct: 5727 ggctctgcagctccgagatctcct 5704
to top
>dbj|AP000744.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-691P24, complete
              sequence
          Length = 126000

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 329    cctccttgttcctccctttggtca 352
              ||||| ||||||||||||||||||
Sbjct: 106754 cctccctgttcctccctttggtca 106777
to top
>gb|AC140679.4| Mus musculus BAC clone RP24-511M8 from 1, complete sequence
          Length = 176052

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 322    ctctcctcctccttgttcctccct 345
              |||||||||||||| |||||||||
Sbjct: 133128 ctctcctcctccttcttcctccct 133151
to top
>gb|BC109162.1| Mus musculus desmocollin 1, mRNA (cDNA clone IMAGE:40047886), partial
            cds
          Length = 2643

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 299  cggccaggctctgcagctccgagctctcctcc 330
            |||||||||||||| ||||| ||| |||||||
Sbjct: 2468 cggccaggctctgctgctcctagcactcctcc 2437
to top
>gb|AC102108.12| Mus musculus chromosome 3, clone RP23-100J23, complete sequence
          Length = 216506

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 68     ggctgtttcgtaaataaagtttta 91
              |||||||| |||||||||||||||
Sbjct: 167894 ggctgtttggtaaataaagtttta 167917
to top
>gb|BC037965.1| Homo sapiens WNK lysine deficient protein kinase 2, mRNA (cDNA clone
            IMAGE:5735496), partial cds
          Length = 2172

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 305  ggctctgcagctccgagctctcct 328
            ||||||||||||||||| ||||||
Sbjct: 1039 ggctctgcagctccgagatctcct 1016
to top
>gb|AC138622.4| Mus musculus BAC clone RP23-100J15 from chromosome 6, complete sequence
          Length = 194611

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 328   tcctccttgttcctcccttt 347
             ||||||||||||||||||||
Sbjct: 50037 tcctccttgttcctcccttt 50056
to top
>emb|AL589661.21| Mouse DNA sequence from clone RP23-58B7 on chromosome 15, complete
              sequence
          Length = 241432

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 323    tctcctcctccttgttcctccctt 346
              ||||||||||||| ||||||||||
Sbjct: 164595 tctcctcctccttcttcctccctt 164572
to top
>emb|AL671999.6| Mouse DNA sequence from clone RP23-149D11 on chromosome 4, complete
             sequence
          Length = 206657

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 207   ggatcaggagagcttcatgt 226
             ||||||||||||||||||||
Sbjct: 17960 ggatcaggagagcttcatgt 17979
to top
>gb|AF267169.4| Homo sapiens chromosome 8 clone RP11-317L5 map 8q24.2, complete sequence
          Length = 202815

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 326    cctcctccttgttcctccct 345
              ||||||||||||||||||||
Sbjct: 113761 cctcctccttgttcctccct 113780


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,666,874
Number of Sequences: 3902068
Number of extensions: 6666874
Number of successful extensions: 132304
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 132011
Number of HSP's gapped (non-prelim): 288
length of query: 645
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 622
effective length of database: 17,143,297,704
effective search space: 10663131171888
effective search space used: 10663131171888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top