ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags16p19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC145775.2| Oryza sativa (japonica cultivar-group) chromosome... 62 2e-06
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
3gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 62 2e-06
4gb|AC129224.2| Oryza sativa (japonica cultivar-group) chromosome... 54 6e-04
5gb|AC129225.2| Oryza sativa (japonica cultivar-group) chromosome... 54 6e-04
6dbj|AB120876.1| Embellisia annulata Brn1 gene for 1,3,8-naphthal... 46 0.13
7emb|CT573072.1| Kuenenia stuttgartiensis genome fragment KUST_D ... 46 0.13
8gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 44 0.53
9ref|NM_190020.1| Oryza sativa (japonica cultivar-group), predic... 42 2.1
10gb|AC160136.2| Mus musculus BAC clone RP23-125E11 from chromosom... 42 2.1
11gb|AC117197.3| Mus musculus BAC clone RP23-127A21 from 16, compl... 42 2.1
12dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete g... 42 2.1
13dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
14dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
15dbj|AP004330.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
16dbj|AP003272.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
17dbj|AP005772.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
18gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome 42 2.1
19dbj|AP003065.2| Homo sapiens genomic DNA, chromosome 11q clone:R... 42 2.1
20ref|NM_197690.1| Oryza sativa (japonica cultivar-group) putative... 40 8.3
21ref|NM_190019.1| Oryza sativa (japonica cultivar-group), predic... 40 8.3
22gb|AC145812.3| Oryza sativa (japonica cultivar-group) chromosome... 40 8.3
23gb|AC091701.3| Trypanosoma brucei chromosome 8 clone RPCI93-26N1... 40 8.3
24gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence 40 8.3
25ref|XM_595523.2| PREDICTED: Bos taurus similar to chemokine (C-X... 40 8.3
26gb|AC166368.3| Mus musculus BAC clone RP23-63I1 from chromosome ... 40 8.3
27gb|AC151974.3| Mus musculus BAC clone RP24-370L8 from chromosome... 40 8.3
28gb|AC146547.2| Gasterosteus aculeatus clone CH213-33E5, complete... 40 8.3
29gb|AC155315.6| Mus musculus BAC clone RP23-212F18 from chromosom... 40 8.3
30gb|AC148447.3| Pan troglodytes chromosome X clone RP43-041A20 ma... 40 8.3
31gb|AC121241.32| Medicago truncatula clone mth2-4n3, complete seq... 40 8.3
32gb|AC146749.23| Medicago truncatula clone mth2-145a1, complete s... 40 8.3
33emb|Z95125.1|HS27K14 Human DNA sequence from clone RP1-27K14 on ... 40 8.3
34emb|BX890575.23| Zebrafish DNA sequence from clone CH211-235C4 i... 40 8.3
35gb|CP000133.1| Rhizobium etli CFN 42, complete genome 40 8.3
36gb|AC037426.12| Oryza sativa chromosome 10 BAC OSJNBb0014I11 gen... 40 8.3
37ref|XM_679496.1| PREDICTED: Danio rerio similar to GDNF family r... 40 8.3
38gb|CP000249.1| Frankia sp. CcI3, complete genome 40 8.3
39gb|AC149218.7| Mus musculus BAC clone RP24-96C7 from chromosome ... 40 8.3
40dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
41dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
42dbj|AP003328.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
43gb|AC016673.5| Homo sapiens BAC clone RP11-17N4 from 2, complete... 40 8.3
44dbj|AP005092.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
45dbj|AK102319.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.3
46dbj|AK100026.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.3
47gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 8.3 
>gb|AC145775.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone
             P0313E01, complete sequence
          Length = 149215

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/64 (85%)
 Strand = Plus / Plus

                                                                         
Query: 199   gacctggccggtgntntntgaagctgccggcatgcaaaggaacgacaccgtcgacgccac 258
             ||||||||||||| | |  || || ||||||||||| ||||||| |||||||| ||||||
Sbjct: 64606 gacctggccggtgatgtaggaggccgccggcatgcagaggaacgccaccgtcgccgccac 64665

                 
Query: 259   ctcc 262
             ||||
Sbjct: 64666 ctcc 64669
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/64 (85%)
 Strand = Plus / Plus

                                                                            
Query: 199      gacctggccggtgntntntgaagctgccggcatgcaaaggaacgacaccgtcgacgccac 258
                ||||||||||||| | |  || || ||||||||||| ||||||| |||||||| ||||||
Sbjct: 25189336 gacctggccggtgatgtaggaggccgccggcatgcagaggaacgccaccgtcgccgccac 25189395

                    
Query: 259      ctcc 262
                ||||
Sbjct: 25189396 ctcc 25189399



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                            
Query: 199      gacctggccggtgntntntgaagctgccggcatgcaaaggaacgacaccgtcgacgccac 258
                ||||||||||||| | |  || || ||||||||||| ||||||| |||||| | ||||||
Sbjct: 25300784 gacctggccggtgatgtaggaggccgccggcatgcagaggaacgccaccgtggccgccac 25300843

                    
Query: 259      ctcc 262
                ||||
Sbjct: 25300844 ctcc 25300847



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 392      gcccactcggcagcaaggctcctcgtgagctg 423
                ||||||||||| || ||||||| |||||||||
Sbjct: 25301389 gcccactcggcggcgaggctccgcgtgagctg 25301420



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 224      gccggcatgcaaaggaacgacacc 247
                ||||||||||||||||||| ||||
Sbjct: 13796052 gccggcatgcaaaggaacgccacc 13796029
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/64 (85%)
 Strand = Plus / Plus

                                                                            
Query: 199      gacctggccggtgntntntgaagctgccggcatgcaaaggaacgacaccgtcgacgccac 258
                ||||||||||||| | |  || || ||||||||||| ||||||| |||||||| ||||||
Sbjct: 25507994 gacctggccggtgatgtaggaggccgccggcatgcagaggaacgccaccgtcgccgccac 25508053

                    
Query: 259      ctcc 262
                ||||
Sbjct: 25508054 ctcc 25508057



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                            
Query: 199      gacctggccggtgntntntgaagctgccggcatgcaaaggaacgacaccgtcgacgccac 258
                ||||||||||||| | |  || || ||||||||||| ||||||| |||||| | ||||||
Sbjct: 25619454 gacctggccggtgatgtaggaggccgccggcatgcagaggaacgccaccgtggccgccac 25619513

                    
Query: 259      ctcc 262
                ||||
Sbjct: 25619514 ctcc 25619517



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 392      gcccactcggcagcaaggctcctcgtgagctg 423
                ||||||||||| || ||||||| |||||||||
Sbjct: 25620059 gcccactcggcggcgaggctccgcgtgagctg 25620090



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 224      gccggcatgcaaaggaacgacacc 247
                ||||||||||||||||||| ||||
Sbjct: 13878054 gccggcatgcaaaggaacgccacc 13878031
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>gb|AC129224.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0029P13, complete sequence
          Length = 158506

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                         
Query: 199   gacctggccggtgntntntgaagctgccggcatgcaaaggaacgacaccgtcgacgccac 258
             ||||||||||||| | |  || || ||||||||||| ||||||| |||||| | ||||||
Sbjct: 27797 gacctggccggtgatgtaggaggccgccggcatgcagaggaacgccaccgtggccgccac 27856

                 
Query: 259   ctcc 262
             ||||
Sbjct: 27857 ctcc 27860



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 392   gcccactcggcagcaaggctcctcgtgagctg 423
             ||||||||||| || ||||||| |||||||||
Sbjct: 28402 gcccactcggcggcgaggctccgcgtgagctg 28433
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>gb|AC129225.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0051D10, complete sequence
          Length = 140272

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                         
Query: 199   gacctggccggtgntntntgaagctgccggcatgcaaaggaacgacaccgtcgacgccac 258
             ||||||||||||| | |  || || ||||||||||| ||||||| |||||| | ||||||
Sbjct: 44958 gacctggccggtgatgtaggaggccgccggcatgcagaggaacgccaccgtggccgccac 44899

                 
Query: 259   ctcc 262
             ||||
Sbjct: 44898 ctcc 44895



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 392   gcccactcggcagcaaggctcctcgtgagctg 423
             ||||||||||| || ||||||| |||||||||
Sbjct: 44353 gcccactcggcggcgaggctccgcgtgagctg 44322
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>dbj|AB120876.1| Embellisia annulata Brn1 gene for 1,3,8-naphthalenetriol reductase,
           partial cds, strain:CBS 302.84
          Length = 893

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 341 tcggtattgatcccacccggagcgacggagttgac 375
           ||||| ||||| ||||| |||||||||||||||||
Sbjct: 691 tcggtcttgataccaccgggagcgacggagttgac 657
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>emb|CT573072.1| Kuenenia stuttgartiensis genome fragment KUST_D (4 of 5)
          Length = 896449

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 185    ccatcgacatagatgacctggccggtg 211
              ||||||||||| |||||||||||||||
Sbjct: 700459 ccatcgacataaatgacctggccggtg 700433
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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 187     atcgacatagatgacctggccg 208
               ||||||||||||||||||||||
Sbjct: 1554126 atcgacatagatgacctggccg 1554147
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>ref|NM_190020.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 834

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 39/46 (84%)
 Strand = Plus / Minus

                                                         
Query: 195 agatgacctggccggtgntntntgaagctgccggcatgcaaaggaa 240
           ||||||||||||||||| | |  || || ||||||||||| |||||
Sbjct: 805 agatgacctggccggtgatgtaggaggcggccggcatgcagaggaa 760
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>gb|AC160136.2| Mus musculus BAC clone RP23-125E11 from chromosome 16, complete
           sequence
          Length = 192119

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 460 ggtggggtatccaagtgagcttgca 484
           |||||||| ||||||||||||||||
Sbjct: 54  ggtggggtctccaagtgagcttgca 30
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>gb|AC117197.3| Mus musculus BAC clone RP23-127A21 from 16, complete sequence
          Length = 211410

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 460    ggtggggtatccaagtgagcttgca 484
              |||||||| ||||||||||||||||
Sbjct: 193420 ggtggggtctccaagtgagcttgca 193396
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>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome
          Length = 2696255

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 187     atcgacatagatgacctggccggtg 211
               ||||||||||||||| |||||||||
Sbjct: 1495473 atcgacatagatgacttggccggtg 1495449
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 515     ccggcgatggcggcgtggaggagga 539
               ||||||| |||||||||||||||||
Sbjct: 4033507 ccggcgacggcggcgtggaggagga 4033531
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 39/46 (84%)
 Strand = Plus / Minus

                                                              
Query: 195      agatgacctggccggtgntntntgaagctgccggcatgcaaaggaa 240
                ||||||||||||||||| | |  || || ||||||||||| |||||
Sbjct: 40845277 agatgacctggccggtgatgtaggaggcggccggcatgcagaggaa 40845232



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 392      gcccactcggcagcaaggctcctcgtgagctg 423
                ||||||||||| || ||||||| |||||||||
Sbjct: 40842303 gcccactcggcggcgaggctccgcgtgagctg 40842272



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 516      cggcgatggcggcgtggaggagga 539
                ||||| ||||||||||||||||||
Sbjct: 24580776 cggcggtggcggcgtggaggagga 24580799
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>dbj|AP004330.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0052O12
          Length = 167881

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 39/46 (84%)
 Strand = Plus / Minus

                                                            
Query: 195    agatgacctggccggtgntntntgaagctgccggcatgcaaaggaa 240
              ||||||||||||||||| | |  || || ||||||||||| |||||
Sbjct: 147923 agatgacctggccggtgatgtaggaggcggccggcatgcagaggaa 147878



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 392    gcccactcggcagcaaggctcctcgtgagctg 423
              ||||||||||| || ||||||| |||||||||
Sbjct: 144949 gcccactcggcggcgaggctccgcgtgagctg 144918
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>dbj|AP003272.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0506E04
          Length = 139934

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 39/46 (84%)
 Strand = Plus / Minus

                                                           
Query: 195   agatgacctggccggtgntntntgaagctgccggcatgcaaaggaa 240
             ||||||||||||||||| | |  || || ||||||||||| |||||
Sbjct: 57383 agatgacctggccggtgatgtaggaggcggccggcatgcagaggaa 57338



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 392   gcccactcggcagcaaggctcctcgtgagctg 423
             ||||||||||| || ||||||| |||||||||
Sbjct: 54409 gcccactcggcggcgaggctccgcgtgagctg 54378
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>dbj|AP005772.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0073A21
          Length = 170051

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 515   ccggcgatggcggcgtggaggagga 539
             ||||||| |||||||||||||||||
Sbjct: 80173 ccggcgacggcggcgtggaggagga 80197
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>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome
          Length = 2695903

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 187    atcgacatagatgacctggccggtg 211
              ||||||||||||||| |||||||||
Sbjct: 125409 atcgacatagatgacttggccggtg 125433
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>dbj|AP003065.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-31L22, complete
              sequences
          Length = 190102

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 530    tggaggaggaaggggtgtgcg 550
              |||||||||||||||||||||
Sbjct: 121879 tggaggaggaaggggtgtgcg 121859
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>ref|NM_197690.1| Oryza sativa (japonica cultivar-group) putative flavin-containing
           monooxygenase (OSJNBb0014I11.8), mRNA
          Length = 1146

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 516 cggcgatggcggcgtggaggagga 539
           |||||| |||||||||||||||||
Sbjct: 201 cggcgagggcggcgtggaggagga 224
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>ref|NM_190019.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 846

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 392 gcccactcggcagcaaggctcctcgtgagctg 423
           ||||||||||| || ||||||| |||||||||
Sbjct: 593 gcccactcggcggcgaggctccgcgtgagctg 562
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>gb|AC145812.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0096A19 map near 50283S, complete sequence
          Length = 139969

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 224   gccggcatgcaaaggaacgacacc 247
             ||||||||||||||||||| ||||
Sbjct: 33611 gccggcatgcaaaggaacgccacc 33588
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>gb|AC091701.3| Trypanosoma brucei chromosome 8 clone RPCI93-26N11, complete sequence
          Length = 142253

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 497   ttaacgatgctgcctcctcc 516
             ||||||||||||||||||||
Sbjct: 67419 ttaacgatgctgcctcctcc 67438
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>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence
          Length = 2481190

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 497    ttaacgatgctgcctcctcc 516
              ||||||||||||||||||||
Sbjct: 626332 ttaacgatgctgcctcctcc 626351
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>ref|XM_595523.2| PREDICTED: Bos taurus similar to chemokine (C-X3-C motif) ligand 1
            (LOC517354), partial mRNA
          Length = 3005

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 529  gtggaggaggaaggggtgtg 548
            ||||||||||||||||||||
Sbjct: 2084 gtggaggaggaaggggtgtg 2065
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>gb|AC166368.3| Mus musculus BAC clone RP23-63I1 from chromosome 7, complete sequence
          Length = 242362

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 59    atggatcaatgaagaaaaat 78
             ||||||||||||||||||||
Sbjct: 23619 atggatcaatgaagaaaaat 23638
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>gb|AC151974.3| Mus musculus BAC clone RP24-370L8 from chromosome 7, complete sequence
          Length = 199179

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 59     atggatcaatgaagaaaaat 78
              ||||||||||||||||||||
Sbjct: 162014 atggatcaatgaagaaaaat 162033



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 59     atggatcaatgaagaaaaat 78
              ||||||||||||||||||||
Sbjct: 118854 atggatcaatgaagaaaaat 118873



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 59    atggatcaatgaagaaaaat 78
             ||||||||||||||||||||
Sbjct: 21842 atggatcaatgaagaaaaat 21861
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>gb|AC146547.2| Gasterosteus aculeatus clone CH213-33E5, complete sequence
          Length = 207268

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 62    gatcaatgaagaaaaatacc 81
             ||||||||||||||||||||
Sbjct: 84501 gatcaatgaagaaaaatacc 84482
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>gb|AC155315.6| Mus musculus BAC clone RP23-212F18 from chromosome 7, complete sequence
          Length = 210212

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 59    atggatcaatgaagaaaaat 78
             ||||||||||||||||||||
Sbjct: 23655 atggatcaatgaagaaaaat 23674
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>gb|AC148447.3| Pan troglodytes chromosome X clone RP43-041A20 map human ortholog
             p11.3, complete sequence
          Length = 210474

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 421   ctgattaattcctccttttg 440
             ||||||||||||||||||||
Sbjct: 69174 ctgattaattcctccttttg 69155
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>gb|AC121241.32| Medicago truncatula clone mth2-4n3, complete sequence
          Length = 114591

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    caccattcatcaaagagaca 113
             ||||||||||||||||||||
Sbjct: 39377 caccattcatcaaagagaca 39396
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>gb|AC146749.23| Medicago truncatula clone mth2-145a1, complete sequence
          Length = 130793

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    caccattcatcaaagagaca 113
             ||||||||||||||||||||
Sbjct: 95158 caccattcatcaaagagaca 95139
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>emb|Z95125.1|HS27K14 Human DNA sequence from clone RP1-27K14 on chromosome Xp11.3-11.4
            Contains the 5' end of the MAOB gene for monoamine
            oxidase B and a CpG island, complete sequence
          Length = 80497

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 421  ctgattaattcctccttttg 440
            ||||||||||||||||||||
Sbjct: 2067 ctgattaattcctccttttg 2086
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>emb|BX890575.23| Zebrafish DNA sequence from clone CH211-235C4 in linkage group 14,
             complete sequence
          Length = 204730

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 526   ggcgtggaggaggaaggggtgtgc 549
             ||||||| ||||||||||||||||
Sbjct: 62476 ggcgtggtggaggaaggggtgtgc 62499
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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 519     cgatggcggcgtggaggagg 538
               ||||||||||||||||||||
Sbjct: 2504155 cgatggcggcgtggaggagg 2504136
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>gb|AC037426.12| Oryza sativa chromosome 10 BAC OSJNBb0014I11 genomic sequence, complete
             sequence
          Length = 135510

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 516   cggcgatggcggcgtggaggagga 539
             |||||| |||||||||||||||||
Sbjct: 77204 cggcgagggcggcgtggaggagga 77227
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>ref|XM_679496.1| PREDICTED: Danio rerio similar to GDNF family receptor alpha 1
            isoform b preproprotein (LOC556647), mRNA
          Length = 1702

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 526  ggcgtggaggaggaaggggtgtgc 549
            ||||||| ||||||||||||||||
Sbjct: 1165 ggcgtggtggaggaaggggtgtgc 1142
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 490    ggagatgttaacgatgctgc 509
              ||||||||||||||||||||
Sbjct: 428226 ggagatgttaacgatgctgc 428245
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>gb|AC149218.7| Mus musculus BAC clone RP24-96C7 from chromosome 7, complete sequence
          Length = 154419

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 59    atggatcaatgaagaaaaat 78
             ||||||||||||||||||||
Sbjct: 48922 atggatcaatgaagaaaaat 48903
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 516      cggcgatggcggcgtggaggagga 539
                |||||| |||||||||||||||||
Sbjct: 21257155 cggcgagggcggcgtggaggagga 21257132
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 529      gtggaggaggaaggggtgtg 548
                ||||||||||||||||||||
Sbjct: 20684730 gtggaggaggaaggggtgtg 20684749
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>dbj|AP003328.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:B1040D09
          Length = 148102

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 516  cggcgatggcggcgtggaggagga 539
            ||||| ||||||||||||||||||
Sbjct: 6739 cggcggtggcggcgtggaggagga 6762
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>gb|AC016673.5| Homo sapiens BAC clone RP11-17N4 from 2, complete sequence
          Length = 185332

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    ccattcatcaaagagacacc 115
             ||||||||||||||||||||
Sbjct: 11910 ccattcatcaaagagacacc 11929
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>dbj|AP005092.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1112_E07
          Length = 132055

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 529   gtggaggaggaaggggtgtg 548
             ||||||||||||||||||||
Sbjct: 78341 gtggaggaggaaggggtgtg 78360
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>dbj|AK102319.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033090G17, full
           insert sequence
          Length = 1451

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 516 cggcgatggcggcgtggaggagga 539
           ||||| ||||||||||||||||||
Sbjct: 209 cggcggtggcggcgtggaggagga 232
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>dbj|AK100026.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013146I06, full
           insert sequence
          Length = 1567

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 529 gtggaggaggaaggggtgtg 548
           ||||||||||||||||||||
Sbjct: 258 gtggaggaggaaggggtgtg 239
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 516      cggcgatggcggcgtggaggagga 539
                |||||| |||||||||||||||||
Sbjct: 21268419 cggcgagggcggcgtggaggagga 21268396


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,479,970
Number of Sequences: 3902068
Number of extensions: 4479970
Number of successful extensions: 81069
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80507
Number of HSP's gapped (non-prelim): 562
length of query: 608
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 585
effective length of database: 17,143,297,704
effective search space: 10028829156840
effective search space used: 10028829156840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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