ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags17e19 |
|---|---|
| Clone Library Name | barley_pub |
>RL13A_LUPLU (O49885) 60S ribosomal protein L13a| Length = 205 Score = 135 bits (341), Expect = 4e-32 Identities = 64/100 (64%), Positives = 77/100 (77%) Frame = -3 Query: 454 RLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQLSKXVGWNYXXTIXXXXXXX 275 RLK YEG+PPP+D+ KR+V+PDALKVLRLQ GH+YCLLGQLS VGWNY TI Sbjct: 105 RLKVYEGIPPPFDKQKRLVVPDALKVLRLQKGHKYCLLGQLSSEVGWNYYDTIKELEKKR 164 Query: 274 XXXXKVSYDRRKQLAKLRVKAEKAXEEKLGTQLXILAPIK 155 +V Y+R+KQL KLRVKAE+ +EKLG+QL ILAP+K Sbjct: 165 KERSQVVYERKKQLNKLRVKAEQVAQEKLGSQLDILAPVK 204
>R13AD_ARATH (Q9FKC0) 60S ribosomal protein L13a-4| Length = 206 Score = 135 bits (340), Expect = 5e-32 Identities = 67/100 (67%), Positives = 74/100 (74%) Frame = -3 Query: 454 RLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQLSKXVGWNYXXTIXXXXXXX 275 RLK YEGVP PYD+ KRMVIPDALKVLRLQ GH+YCLLG+LS VGWN+ TI Sbjct: 106 RLKVYEGVPTPYDKIKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELETKR 165 Query: 274 XXXXKVSYDRRKQLAKLRVKAEKAXEEKLGTQLXILAPIK 155 V Y+R+KQL KLRVKAEK EEKLG QL ILAP+K Sbjct: 166 KERAHVVYERKKQLNKLRVKAEKVAEEKLGAQLDILAPVK 205
>R13AC_ARATH (Q9SVR0) 60S ribosomal protein L13a-3| Length = 206 Score = 134 bits (337), Expect = 1e-31 Identities = 63/100 (63%), Positives = 76/100 (76%) Frame = -3 Query: 454 RLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQLSKXVGWNYXXTIXXXXXXX 275 RLK +EG+PPPYD+ KRMVIPDALKVLRLQ GH+YCLLG+LS VGWN+ TI Sbjct: 106 RLKVFEGIPPPYDKIKRMVIPDALKVLRLQSGHKYCLLGRLSSEVGWNHYDTIKELETKR 165 Query: 274 XXXXKVSYDRRKQLAKLRVKAEKAXEEKLGTQLXILAPIK 155 +V Y+R+KQL KLR KAEK EE+LG+QL +LAP+K Sbjct: 166 KERSQVMYERKKQLNKLRTKAEKVAEERLGSQLDVLAPVK 205
>R13AB_ARATH (Q9LRX8) 60S ribosomal protein L13a-2| Length = 206 Score = 132 bits (331), Expect = 5e-31 Identities = 64/100 (64%), Positives = 74/100 (74%) Frame = -3 Query: 454 RLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQLSKXVGWNYXXTIXXXXXXX 275 RLK +EGVPPPYD+ KRMVIPDALKVLRLQ GH+YCLLG+LS VGWN+ TI Sbjct: 106 RLKVFEGVPPPYDKVKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELEVKR 165 Query: 274 XXXXKVSYDRRKQLAKLRVKAEKAXEEKLGTQLXILAPIK 155 + Y+R+KQL KLR KAEK EEKLG+QL +LA IK Sbjct: 166 KERSQALYERKKQLTKLRAKAEKVAEEKLGSQLDVLASIK 205
>R13AA_ARATH (Q9SFU1) 60S ribosomal protein L13a-1| Length = 206 Score = 131 bits (329), Expect = 9e-31 Identities = 62/100 (62%), Positives = 75/100 (75%) Frame = -3 Query: 454 RLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQLSKXVGWNYXXTIXXXXXXX 275 RLK +EGVP PYD+ KRMV+PDALKVLRLQ GH+YCLLG+LS VGWN+ TI Sbjct: 106 RLKVFEGVPTPYDKIKRMVVPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELENKR 165 Query: 274 XXXXKVSYDRRKQLAKLRVKAEKAXEEKLGTQLXILAPIK 155 + Y+R+KQL+KLR KAEK EEKLG+QL +LAP+K Sbjct: 166 KERAQAVYERKKQLSKLRAKAEKVAEEKLGSQLDVLAPVK 205
>RL13A_PICMA (O65055) 60S ribosomal protein L13a| Length = 206 Score = 127 bits (318), Expect = 2e-29 Identities = 61/99 (61%), Positives = 76/99 (76%) Frame = -3 Query: 451 LKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQLSKXVGWNYXXTIXXXXXXXX 272 L+A+EGVPPPYDR KRMVIPDALKVLRLQPGH+YCLLG+LSK VGW++ TI Sbjct: 107 LRAFEGVPPPYDRKKRMVIPDALKVLRLQPGHKYCLLGRLSKEVGWHHFDTITELEEKRK 166 Query: 271 XXXKVSYDRRKQLAKLRVKAEKAXEEKLGTQLXILAPIK 155 +VSY+RRKQLAKLR KA + E++L ++ +LA +K Sbjct: 167 AKAQVSYERRKQLAKLRSKAVELAEKQLAPEMELLASLK 205
>RL13A_CYAPA (P93099) 60S ribosomal protein L13a| Length = 200 Score = 92.0 bits (227), Expect = 6e-19 Identities = 43/88 (48%), Positives = 55/88 (62%) Frame = -3 Query: 454 RLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQLSKXVGWNYXXTIXXXXXXX 275 RLKA+EGVPPPYD+ KRMVIP AL+VLRL+PG ++C+LG+L+ VGW + + Sbjct: 100 RLKAFEGVPPPYDKMKRMVIPQALRVLRLKPGRKFCVLGRLATEVGWRHSDLVTRLEEKR 159 Query: 274 XXXXKVSYDRRKQLAKLRVKAEKAXEEK 191 Y R+K L LR KA A K Sbjct: 160 KTKSAAFYARKKTLVNLRAKAAVAVASK 187
>RL13A_BOVIN (Q3SZ90) 60S ribosomal protein L13a| Length = 202 Score = 90.5 bits (223), Expect = 2e-18 Identities = 42/96 (43%), Positives = 61/96 (63%) Frame = -3 Query: 454 RLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQLSKXVGWNYXXTIXXXXXXX 275 RLK ++G+PPPYD+ KRMV+P ALKV+RL+P ++ LG+L+ VGW Y Sbjct: 100 RLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKR 159 Query: 274 XXXXKVSYDRRKQLAKLRVKAEKAXEEKLGTQLXIL 167 K+ Y ++KQL +LR +AEK E+K+G +L Sbjct: 160 KEKAKIHYRKKKQLMRLRKQAEKNIEKKIGKFTEVL 195
>RL13A_PONPY (Q5RA38) 60S ribosomal protein L13a| Length = 202 Score = 89.0 bits (219), Expect = 5e-18 Identities = 41/96 (42%), Positives = 60/96 (62%) Frame = -3 Query: 454 RLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQLSKXVGWNYXXTIXXXXXXX 275 RLK ++G+PPPYD+ KRMV+P ALKV+RL+P ++ LG+L+ VGW Y Sbjct: 100 RLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKR 159 Query: 274 XXXXKVSYDRRKQLAKLRVKAEKAXEEKLGTQLXIL 167 K+ Y ++KQL +LR +AEK E+K+ +L Sbjct: 160 KEKAKIHYRKKKQLVRLRKQAEKNVEKKIDKYTEVL 195
>RL13A_MACFA (Q4R8Z2) 60S ribosomal protein L13a| Length = 202 Score = 88.6 bits (218), Expect = 7e-18 Identities = 41/96 (42%), Positives = 60/96 (62%) Frame = -3 Query: 454 RLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQLSKXVGWNYXXTIXXXXXXX 275 RLK ++G+PPPYD+ KRMV+P ALKV+RL+P ++ LG+L+ VGW Y Sbjct: 100 RLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTTTLEEKR 159 Query: 274 XXXXKVSYDRRKQLAKLRVKAEKAXEEKLGTQLXIL 167 K+ Y ++KQL +LR +AEK E+K+ +L Sbjct: 160 KEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTQVL 195
>RL13A_HUMAN (P40429) 60S ribosomal protein L13a (23 kDa highly basic protein)| Length = 202 Score = 88.6 bits (218), Expect = 7e-18 Identities = 41/96 (42%), Positives = 60/96 (62%) Frame = -3 Query: 454 RLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQLSKXVGWNYXXTIXXXXXXX 275 RLK ++G+PPPYD+ KRMV+P ALKV+RL+P ++ LG+L+ VGW Y Sbjct: 100 RLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKR 159 Query: 274 XXXXKVSYDRRKQLAKLRVKAEKAXEEKLGTQLXIL 167 K+ Y ++KQL +LR +AEK E+K+ +L Sbjct: 160 KEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVL 195
>RL16_NEUCR (Q9P720) 60S ribosomal protein L16| Length = 202 Score = 87.4 bits (215), Expect = 2e-17 Identities = 38/86 (44%), Positives = 55/86 (63%) Frame = -3 Query: 454 RLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQLSKXVGWNYXXTIXXXXXXX 275 RLK +EGVPPPYD+ K+MV+P AL+VLRLQPG ++C +G+LS VGW Y + Sbjct: 103 RLKVFEGVPPPYDKKKKMVVPQALRVLRLQPGRKFCTVGRLSSEVGWKYEDVVSRLEERR 162 Query: 274 XXXXKVSYDRRKQLAKLRVKAEKAXE 197 Y+R+K A+ +A+K+ + Sbjct: 163 KAKGAAYYERKKVAARQLSEAKKSAK 188
>RL13A_RAT (P35427) 60S ribosomal protein L13a| Length = 202 Score = 86.3 bits (212), Expect = 3e-17 Identities = 40/89 (44%), Positives = 57/89 (64%) Frame = -3 Query: 454 RLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQLSKXVGWNYXXTIXXXXXXX 275 RLK +G+PPPYD+ KRMV+P ALKV+RL+P ++ LG+L+ VGW Y Sbjct: 100 RLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKR 159 Query: 274 XXXXKVSYDRRKQLAKLRVKAEKAXEEKL 188 K+ Y ++KQL +LR +AEK E+K+ Sbjct: 160 KEKAKIHYRKKKQLLRLRKQAEKNVEKKI 188
>RL13A_MOUSE (P19253) 60S ribosomal protein L13a (Transplantation antigen P198)| (Tum-P198 antigen) Length = 202 Score = 84.7 bits (208), Expect = 1e-16 Identities = 39/89 (43%), Positives = 57/89 (64%) Frame = -3 Query: 454 RLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQLSKXVGWNYXXTIXXXXXXX 275 RLK +G+PPPYD+ KRMV+P ALKV+RL+P ++ LG+L+ VGW Y Sbjct: 100 RLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKR 159 Query: 274 XXXXKVSYDRRKQLAKLRVKAEKAXEEKL 188 K+ Y ++KQ+ +LR +AEK E+K+ Sbjct: 160 KEKAKMHYRKKKQILRLRKQAEKNVEKKI 188
>RL13A_SALTR (Q91487) 60S ribosomal protein L13a (Transplantation antigen P198| homolog) (Fragment) Length = 189 Score = 82.8 bits (203), Expect = 4e-16 Identities = 39/96 (40%), Positives = 56/96 (58%) Frame = -3 Query: 454 RLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQLSKXVGWNYXXTIXXXXXXX 275 RLK ++GVPPPYD+ KRMV+P ALK++RL+P ++ LLG+L+ VGW Y Sbjct: 87 RLKVFDGVPPPYDKRKRMVVPAALKIVRLKPTRKFALLGRLAHEVGWKYQAITATLEEKR 146 Query: 274 XXXXKVSYDRRKQLAKLRVKAEKAXEEKLGTQLXIL 167 K+ Y ++K + KL AEK E + +L Sbjct: 147 KEKAKIRYAKKKTVTKLSKLAEKNVESTISKYTAVL 182
>RL16A_YEAST (P26784) 60S ribosomal protein L16-A (L13A) (RP22)| Length = 198 Score = 80.1 bits (196), Expect = 2e-15 Identities = 39/97 (40%), Positives = 53/97 (54%), Gaps = 1/97 (1%) Frame = -3 Query: 454 RLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQLSKXVGWNYXXTIXXXXXXX 275 RLK +EG+PPPYD+ KR+V+P AL+VLRL+PG +Y LG+LS VGW Y + Sbjct: 100 RLKVFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEAKR 159 Query: 274 XXXXKVSYDRRKQLAKLRVKAE-KAXEEKLGTQLXIL 167 Y +++ K A A E + QL L Sbjct: 160 KVSSAEYYAKKRAFTKKVASANATAAESDVAKQLAAL 196
>RL16B_YEAST (P26785) 60S ribosomal protein L16-B (YL15) (RP23)| Length = 197 Score = 78.6 bits (192), Expect = 7e-15 Identities = 36/87 (41%), Positives = 49/87 (56%) Frame = -3 Query: 454 RLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQLSKXVGWNYXXTIXXXXXXX 275 RLK +EG+PPPYD+ KR+V+P AL+VLRL+PG +Y LG+LS VGW Y + Sbjct: 99 RLKIFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEDKR 158 Query: 274 XXXXKVSYDRRKQLAKLRVKAEKAXEE 194 Y +++ K A A E Sbjct: 159 KVRSAEYYAKKRAFTKKVSSASAAASE 185
>RL16A_SCHPO (O42848) 60S ribosomal protein L16-A| Length = 197 Score = 73.6 bits (179), Expect = 2e-13 Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 2/90 (2%) Frame = -3 Query: 451 LKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQLSKXVGWNYXXTIXXXXXXXX 272 L+A EG+PPP+D+ KR+V+P AL+VLRL+PG +YC +G+LS VGW Y + Sbjct: 103 LQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRK 162 Query: 271 XXXKVSYDRR--KQLAKLRVKAEKAXEEKL 188 Y + KQ KA + KL Sbjct: 163 VKSAAFYQAKLAKQKKIASAKAASSVNGKL 192
>RL16B_SCHPO (O42991) 60S ribosomal protein L16-B| Length = 197 Score = 73.2 bits (178), Expect = 3e-13 Identities = 33/83 (39%), Positives = 48/83 (57%) Frame = -3 Query: 451 LKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQLSKXVGWNYXXTIXXXXXXXX 272 L+A EG+PPP+D+ KR+V+P AL+VLRL+PG +YC +G+LS VGW Y + Sbjct: 103 LQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYNDIVAKLEERRK 162 Query: 271 XXXKVSYDRRKQLAKLRVKAEKA 203 Y + K A++A Sbjct: 163 VKSAAFYQAKLAKQKKIASAKEA 185
>RL16C_SCHPO (O43004) 60S ribosomal protein L16-C| Length = 197 Score = 71.2 bits (173), Expect = 1e-12 Identities = 28/48 (58%), Positives = 39/48 (81%) Frame = -3 Query: 451 LKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQLSKXVGWNY 308 L+A EG+PPP+D+ KR+V+P AL+VLRL+P +YC +G+LS VGW Y Sbjct: 103 LQALEGIPPPFDKQKRLVVPAALRVLRLKPSRKYCTIGRLSSEVGWKY 150
>RL13A_DROME (Q9VNE9) 60S ribosomal protein L13A| Length = 205 Score = 70.9 bits (172), Expect = 1e-12 Identities = 31/83 (37%), Positives = 51/83 (61%) Frame = -3 Query: 454 RLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQLSKXVGWNYXXTIXXXXXXX 275 RL+ ++G+P PYD+ +R+V+P A++VL L+ +YC +G+LS VGW+Y I Sbjct: 103 RLRVFDGIPSPYDKRRRVVVPIAMRVLTLRSDRKYCQVGRLSHEVGWHYQDVIKSLERKR 162 Query: 274 XXXXKVSYDRRKQLAKLRVKAEK 206 +V+ ++L KL VKA + Sbjct: 163 KAKLRVTLKHNRELKKLTVKARE 185
>RL13A_SPOFR (Q962U0) 60S ribosomal protein L13A| Length = 204 Score = 69.7 bits (169), Expect = 3e-12 Identities = 28/53 (52%), Positives = 39/53 (73%) Frame = -3 Query: 454 RLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQLSKXVGWNYXXTI 296 RL+AY+G PPPYD +R+V+P AL+V L+PG +YC +G+LS VGW Y + Sbjct: 103 RLRAYDGCPPPYDNRRRVVVPAALRVFCLKPGRKYCHVGRLSHEVGWKYRDVV 155
>RL13A_CHOPR (Q8MUR4) 60S ribosomal protein L13A| Length = 204 Score = 68.6 bits (166), Expect = 7e-12 Identities = 27/53 (50%), Positives = 39/53 (73%) Frame = -3 Query: 454 RLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQLSKXVGWNYXXTI 296 RL++Y+G PPPYD +R+V+P AL+V L+PG +YC +G+LS VGW Y + Sbjct: 103 RLRSYDGCPPPYDNRRRVVVPAALRVFCLKPGRKYCHVGRLSHEVGWKYREVV 155
>RL13A_CAEEL (Q27389) 60S ribosomal protein L13a| Length = 202 Score = 64.3 bits (155), Expect = 1e-10 Identities = 31/95 (32%), Positives = 52/95 (54%) Frame = -3 Query: 451 LKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQLSKXVGWNYXXTIXXXXXXXX 272 L+AYEGVP Y +TK + P A + RLQP ++C++G+LS VGW + + Sbjct: 103 LRAYEGVPAKYQKTKSLHAPSASR-FRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRK 161 Query: 271 XXXKVSYDRRKQLAKLRVKAEKAXEEKLGTQLXIL 167 ++++K++ KL V+A+K K+ I+ Sbjct: 162 VKGAAYFEQKKKMDKLAVQAKKNAAPKIAQYQKII 196
>RL13A_PIG (Q95307) 60S ribosomal protein L13a (Fragment)| Length = 137 Score = 53.9 bits (128), Expect = 2e-07 Identities = 23/41 (56%), Positives = 33/41 (80%) Frame = -3 Query: 454 RLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQL 332 RLK ++G+PPPYD+ KRMV+P ALKV+RL+ ++ LG+L Sbjct: 97 RLKVFDGIPPPYDKKKRMVVPAALKVVRLKLTGKFXYLGRL 137
>CHIB_TOBAC (P29061) Basic endochitinase precursor (EC 3.2.1.14)| Length = 294 Score = 28.5 bits (62), Expect = 8.4 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%) Frame = +3 Query: 363 GCSLRTLS---ASGMTMRLVLSYGGGTPSYALS 452 GC T S + ++++LS GGGTP+Y LS Sbjct: 80 GCQQLTKSIRHCQSIGIKIMLSIGGGTPTYTLS 112 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,075,293 Number of Sequences: 219361 Number of extensions: 703005 Number of successful extensions: 1958 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 1924 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1957 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
