ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags16p10 |
|---|---|
| Clone Library Name | barley_pub |
>DHH1_YARLI (Q6C0X2) ATP-dependent RNA helicase DHH1 (EC 3.6.1.-)| Length = 522 Score = 53.1 bits (126), Expect = 7e-07 Identities = 22/30 (73%), Positives = 27/30 (90%) Frame = -2 Query: 635 YEDRFNLYRIEQELGTEIKPIPPQIDRTIY 546 + DR+NLY+IEQELGTEIKPIP QID+ +Y Sbjct: 371 WNDRYNLYKIEQELGTEIKPIPAQIDKNLY 400
>DHH1_SCHPO (Q09181) Putative ATP-dependent RNA helicase ste13 (EC 3.6.1.-)| Length = 485 Score = 51.6 bits (122), Expect = 2e-06 Identities = 22/30 (73%), Positives = 26/30 (86%) Frame = -2 Query: 635 YEDRFNLYRIEQELGTEIKPIPPQIDRTIY 546 + DRFNLYRIE ELGTEI+PIPP ID ++Y Sbjct: 387 WADRFNLYRIENELGTEIQPIPPSIDPSLY 416
>DHH1_ASPOR (Q2U5A2) ATP-dependent RNA helicase dhh1 (EC 3.6.1.-)| Length = 511 Score = 51.2 bits (121), Expect = 3e-06 Identities = 21/30 (70%), Positives = 27/30 (90%) Frame = -2 Query: 635 YEDRFNLYRIEQELGTEIKPIPPQIDRTIY 546 ++DRFNLY+IEQELGTEI+PIP ID+ +Y Sbjct: 390 WDDRFNLYKIEQELGTEIQPIPQNIDKKLY 419
>DHH1_ASPFU (Q4WWD3) ATP-dependent RNA helicase dhh1 (EC 3.6.1.-)| Length = 507 Score = 51.2 bits (121), Expect = 3e-06 Identities = 21/30 (70%), Positives = 27/30 (90%) Frame = -2 Query: 635 YEDRFNLYRIEQELGTEIKPIPPQIDRTIY 546 ++DRFNLY+IEQELGTEI+PIP ID+ +Y Sbjct: 390 WDDRFNLYKIEQELGTEIQPIPQNIDKKLY 419
>DHH1_KLULA (Q6CSZ7) ATP-dependent RNA helicase DHH1 (EC 3.6.1.-)| Length = 514 Score = 50.1 bits (118), Expect = 6e-06 Identities = 21/30 (70%), Positives = 26/30 (86%) Frame = -2 Query: 635 YEDRFNLYRIEQELGTEIKPIPPQIDRTIY 546 + DRFNLY+IEQEL TEI PIP QID+++Y Sbjct: 379 WNDRFNLYKIEQELNTEIAPIPSQIDKSLY 408
>ME31_DROME (P23128) Putative ATP-dependent RNA helicase me31b (EC 3.6.1.-)| (Maternal expression at 31B) Length = 459 Score = 49.7 bits (117), Expect = 7e-06 Identities = 22/30 (73%), Positives = 26/30 (86%) Frame = -2 Query: 635 YEDRFNLYRIEQELGTEIKPIPPQIDRTIY 546 YEDRF+L+RIE+ELGTEIKPIP ID +Y Sbjct: 401 YEDRFDLHRIEKELGTEIKPIPKVIDPALY 430
>DHH1_CANAL (Q5AAW3) ATP-dependent RNA helicase DHH1 (EC 3.6.1.-)| Length = 549 Score = 49.3 bits (116), Expect = 1e-05 Identities = 20/30 (66%), Positives = 27/30 (90%) Frame = -2 Query: 635 YEDRFNLYRIEQELGTEIKPIPPQIDRTIY 546 + DR++LY+IEQELGTEIKPIP ID+++Y Sbjct: 373 WNDRYSLYKIEQELGTEIKPIPATIDKSLY 402
>DHH1_ASHGO (Q75BS4) ATP-dependent RNA helicase DHH1 (EC 3.6.1.-)| Length = 484 Score = 49.3 bits (116), Expect = 1e-05 Identities = 21/30 (70%), Positives = 26/30 (86%) Frame = -2 Query: 635 YEDRFNLYRIEQELGTEIKPIPPQIDRTIY 546 + DRFNLY+IEQELGTEI IP QID+++Y Sbjct: 372 WNDRFNLYKIEQELGTEIAAIPAQIDKSLY 401
>DHH1_GIBZE (Q4HW67) ATP-dependent RNA helicase DHH1 (EC 3.6.1.-)| Length = 486 Score = 48.5 bits (114), Expect = 2e-05 Identities = 19/30 (63%), Positives = 27/30 (90%) Frame = -2 Query: 635 YEDRFNLYRIEQELGTEIKPIPPQIDRTIY 546 ++DRFNLY IE++LGTEI+PIP ID+++Y Sbjct: 385 WDDRFNLYNIERDLGTEIQPIPASIDKSLY 414
>DDX6_MOUSE (P54823) Probable ATP-dependent RNA helicase DDX6 (EC 3.6.1.-)| (DEAD box protein 6) (ATP-dependent RNA helicase p54) (Oncogene RCK homolog) Length = 483 Score = 48.5 bits (114), Expect = 2e-05 Identities = 20/30 (66%), Positives = 26/30 (86%) Frame = -2 Query: 635 YEDRFNLYRIEQELGTEIKPIPPQIDRTIY 546 Y+DRFNL IE++LGTEIKPIP ID+++Y Sbjct: 440 YDDRFNLKSIEEQLGTEIKPIPSNIDKSLY 469
>DDX6_HUMAN (P26196) Probable ATP-dependent RNA helicase DDX6 (EC 3.6.1.-)| (DEAD box protein 6) (ATP-dependent RNA helicase p54) (Oncogene RCK) Length = 483 Score = 48.5 bits (114), Expect = 2e-05 Identities = 20/30 (66%), Positives = 26/30 (86%) Frame = -2 Query: 635 YEDRFNLYRIEQELGTEIKPIPPQIDRTIY 546 Y+DRFNL IE++LGTEIKPIP ID+++Y Sbjct: 440 YDDRFNLKSIEEQLGTEIKPIPSNIDKSLY 469
>DDX6_XENLA (P54824) Probable ATP-dependent RNA helicase DDX6 (EC 3.6.1.-)| (DEAD box protein 6) (ATP-dependent RNA helicase p54) (Xp54) Length = 481 Score = 48.1 bits (113), Expect = 2e-05 Identities = 20/30 (66%), Positives = 25/30 (83%) Frame = -2 Query: 635 YEDRFNLYRIEQELGTEIKPIPPQIDRTIY 546 Y+DRFNL IE++LGTEIKPIP ID+ +Y Sbjct: 439 YDDRFNLKSIEEQLGTEIKPIPSSIDKNLY 468
>DHH1_NEUCR (Q7S5D9) ATP-dependent RNA helicase dhh-1 (EC 3.6.1.-)| Length = 569 Score = 48.1 bits (113), Expect = 2e-05 Identities = 19/30 (63%), Positives = 27/30 (90%) Frame = -2 Query: 635 YEDRFNLYRIEQELGTEIKPIPPQIDRTIY 546 ++DRFNLY IE++LGTEI+PIP ID+++Y Sbjct: 388 WDDRFNLYNIERDLGTEIQPIPQTIDKSLY 417
>DHH1_YEAST (P39517) ATP-dependent RNA helicase DHH1 (EC 3.6.1.-) (DExD/H-box| helicase 1) Length = 506 Score = 47.0 bits (110), Expect = 5e-05 Identities = 20/30 (66%), Positives = 25/30 (83%) Frame = -2 Query: 635 YEDRFNLYRIEQELGTEIKPIPPQIDRTIY 546 + DRFNLY+IEQELGTEI IP ID+++Y Sbjct: 389 WNDRFNLYKIEQELGTEIAAIPATIDKSLY 418
>DHH1_CANGA (Q6FQU5) ATP-dependent RNA helicase DHH1 (EC 3.6.1.-)| Length = 507 Score = 47.0 bits (110), Expect = 5e-05 Identities = 20/30 (66%), Positives = 25/30 (83%) Frame = -2 Query: 635 YEDRFNLYRIEQELGTEIKPIPPQIDRTIY 546 + DRFNLY+IEQELGTEI IP ID+++Y Sbjct: 374 WNDRFNLYKIEQELGTEIAAIPATIDKSLY 403
>DHH1_CRYNV (Q58Z64) ATP-dependent RNA helicase VAD1 (EC 3.6.1.-) (Virulence| associated DEAD box protein 1) Length = 616 Score = 45.4 bits (106), Expect = 1e-04 Identities = 21/29 (72%), Positives = 22/29 (75%) Frame = -2 Query: 632 EDRFNLYRIEQELGTEIKPIPPQIDRTIY 546 EDR NLYRIE ELGTEI PIP ID +Y Sbjct: 381 EDRHNLYRIESELGTEIAPIPAVIDPVLY 409
>DHH1_CRYNE (Q5KJI2) ATP-dependent RNA helicase DHH1 (EC 3.6.1.-)| Length = 625 Score = 45.4 bits (106), Expect = 1e-04 Identities = 21/29 (72%), Positives = 22/29 (75%) Frame = -2 Query: 632 EDRFNLYRIEQELGTEIKPIPPQIDRTIY 546 EDR NLYRIE ELGTEI PIP ID +Y Sbjct: 381 EDRHNLYRIESELGTEIAPIPAVIDPVLY 409
>TRA1_MAIZE (P08770) Putative AC transposase (ORFA)| Length = 806 Score = 30.8 bits (68), Expect = 3.5 Identities = 11/26 (42%), Positives = 19/26 (73%) Frame = -2 Query: 242 TMYWLASFFYRSFCELRDLGVNRWII 165 T Y A+ FY+ FCE++DL +++W + Sbjct: 524 TQYSTANLFYKGFCEIKDL-IDQWCV 548
>NUDH_BORPE (Q7VTZ7) Probable (di)nucleoside polyphosphate hydrolase (EC| 3.6.1.-) Length = 190 Score = 30.8 bits (68), Expect = 3.5 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = +1 Query: 25 KHSLNTNPI*ELQIRHIRMHADTRYLKCAVHTPRS 129 K + T + EL + R H +TRYL+ VH PRS Sbjct: 140 KRDVYTQALNELAVILFRRHHETRYLRQRVHGPRS 174
>NUDH_BORPA (Q7W482) Probable (di)nucleoside polyphosphate hydrolase (EC| 3.6.1.-) Length = 190 Score = 30.8 bits (68), Expect = 3.5 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = +1 Query: 25 KHSLNTNPI*ELQIRHIRMHADTRYLKCAVHTPRS 129 K + T + EL + R H +TRYL+ VH PRS Sbjct: 140 KRDVYTQALNELAVILFRRHHETRYLRQRVHGPRS 174
>NUDH_BORBR (Q7WFP0) Probable (di)nucleoside polyphosphate hydrolase (EC| 3.6.1.-) Length = 190 Score = 30.8 bits (68), Expect = 3.5 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = +1 Query: 25 KHSLNTNPI*ELQIRHIRMHADTRYLKCAVHTPRS 129 K + T + EL + R H +TRYL+ VH PRS Sbjct: 140 KRDVYTQALNELAVILFRRHHETRYLRQRVHGPRS 174
>TRAC9_MAIZE (P03010) Putative AC9 transposase| Length = 839 Score = 30.0 bits (66), Expect = 6.0 Identities = 11/24 (45%), Positives = 18/24 (75%) Frame = -2 Query: 242 TMYWLASFFYRSFCELRDLGVNRW 171 T Y A+ FY+ FCE++DL +++W Sbjct: 494 TQYSTANLFYKGFCEIKDL-IDQW 516
>ODBA_BOVIN (P11178) 2-oxoisovalerate dehydrogenase alpha subunit,| mitochondrial precursor (EC 1.2.4.4) (Branched-chain alpha-keto acid dehydrogenase E1 component alpha chain) (BCKDH E1-alpha) Length = 455 Score = 29.6 bits (65), Expect = 7.9 Identities = 9/21 (42%), Positives = 16/21 (76%) Frame = +2 Query: 314 IVRVMGSFGLAMIHPHKWSAE 376 ++R++G+ GLA HPH+W + Sbjct: 32 LLRLLGARGLARFHPHRWQQQ 52 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 89,622,174 Number of Sequences: 219361 Number of extensions: 1755716 Number of successful extensions: 3584 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 3490 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3584 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5938641176 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
