ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags16p10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK071636.1| Oryza sativa (japonica cultivar-group) cDNA clon... 141 3e-30
2dbj|AK101477.1| Oryza sativa (japonica cultivar-group) cDNA clon... 133 8e-28
3emb|AL663006.3|OSJN00204 Oryza sativa genomic DNA, chromosome 4,... 131 3e-27
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 131 3e-27
5ref|XM_466991.1| Oryza sativa (japonica cultivar-group), mRNA 101 3e-18
6ref|XM_466992.1| Oryza sativa (japonica cultivar-group), mRNA 101 3e-18
7dbj|AK072124.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 3e-18
8dbj|AK066504.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 3e-18
9gb|BT018551.1| Zea mays clone EL01N0438H11.d mRNA sequence 100 1e-17
10gb|AY108539.1| Zea mays PCO101054 mRNA sequence 100 1e-17
11ref|XM_473293.1| Oryza sativa (japonica cultivar-group), predic... 96 2e-16
12dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 76 2e-10
13dbj|AP004133.3| Oryza sativa (japonica cultivar-group) genomic D... 76 2e-10
14emb|AJ011564.1|YLAJ11564 Yarrowia lipolytica DHH1 gene 46 0.14
15ref|XM_505690.1| Yarrowia lipolytica CLIB122, YALI0F21032g predi... 46 0.14
16ref|NM_164898.1| Drosophila melanogaster maternal expression at ... 46 0.14
17ref|NM_078809.2| Drosophila melanogaster maternal expression at ... 46 0.14
18gb|AY051663.1| Drosophila melanogaster LD21247 full length cDNA 46 0.14
19gb|AC009849.7|AC009849 Drosophila melanogaster, chromosome 2L, r... 46 0.14
20gb|AE003628.2| Drosophila melanogaster chromosome 2L, section 37... 46 0.14
21emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB1... 46 0.14
22gb|M59926.1|DROHELI D.melanogaster RNA helicase mRNA, complete cds 46 0.14
23ref|NM_116291.3| Arabidopsis thaliana ATP binding / ATP-dependen... 42 2.2
24ref|NM_179204.1| Arabidopsis thaliana ATP binding / ATP-dependen... 42 2.2
25gb|AY113985.1| Arabidopsis thaliana putative RNA helicase (At4g0... 42 2.2
26gb|AY080837.1| Arabidopsis thaliana putative RNA helicase (At4g0... 42 2.2
27emb|AL161472.2|ATCHRIV2 Arabidopsis thaliana DNA chromosome 4, c... 42 2.2
28gb|AC083984.7| Homo sapiens chromosome 11, clone RP11-401C19, co... 42 2.2
29emb|AJ010460.1|ATH010460 Arabidopsis thaliana mRNA for DEAD box ... 42 2.2
30emb|BX828369.1|CNS0A2CA Arabidopsis thaliana Full-length cDNA Co... 42 2.2
31gb|AC007513.40| Homo sapiens 12 BAC RP11-510I5 (Roswell Park Can... 42 2.2
32gb|AF058919.2|F6N23 Arabidopsis thaliana BAC F6N23 42 2.2
33dbj|AP006477.2| Homo sapiens genomic DNA, chromosome 11, clone:R... 42 2.2
34gb|DP000012.1| Macropus eugenii target 1 genomic scaffold 40 8.7
35gb|AC137871.18| Mus musculus chromosome 15, clone RP23-41B9, com... 40 8.7
36emb|CR956374.5| Pig DNA sequence from clone CH242-153C17 on chro... 40 8.7
37gb|AC121801.2| Mus musculus BAC clone RP23-432P18 from 14, compl... 40 8.7
38gb|AC158986.2| Mus musculus BAC clone RP23-284L2 from chromosome... 40 8.7
39emb|CR558303.7| Zebrafish DNA sequence from clone CH211-183C15 i... 40 8.7
40emb|CR318632.9| Zebrafish DNA sequence from clone CH211-113N10 i... 40 8.7
41gb|AC069066.22| Homo sapiens 3 BAC RP11-261E7 (Roswell Park Canc... 40 8.7
42dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, comple... 40 8.7
43emb|BX294187.6| Zebrafish DNA sequence from clone CH211-233E16 i... 40 8.7
44gb|AC106053.6| Homo sapiens BAC clone RP11-818B6 from 2, complet... 40 8.7
45gb|AC151045.3| Macropus eugenii clone ME_KBa-444G7, complete seq... 40 8.7
46gb|AC104058.4| Homo sapiens BAC clone RP13-513D10 from 2, comple... 40 8.7
47gb|AC145408.3| Macropus eugenii clone ME_KBa-210L14, complete se... 40 8.7
48gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 8.7
49emb|AL929534.12| Mouse DNA sequence from clone RP23-275L13 on ch... 40 8.7 
>dbj|AK071636.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023100C24, full
            insert sequence
          Length = 2205

 Score =  141 bits (71), Expect = 3e-30
 Identities = 146/171 (85%)
 Strand = Plus / Minus

                                                                        
Query: 462  cctgatgagctgctatttacacaagttgtcttgttactcccagagtggggcatacaagat 521
            |||||||||||| |||||||||| ||| |||| ||||| ||||||   ||||||||||||
Sbjct: 1714 cctgatgagctgatatttacacaggttatcttattacttccagagattggcatacaagat 1655

                                                                        
Query: 522  taatctgccagacaactattggcaatatatcgtccggtctatctgaggaggtataggttt 581
               |||| |||| ||||||||||||||||| |  |||||||||||||| ||||| |||||
Sbjct: 1654 cgttctgtcagataactattggcaatatattgctcggtctatctgaggtggtattggttt 1595

                                                               
Query: 582  tatctcagttccaagctcctgctcaatccgatacaaattaaaccgatcctc 632
            |||||| ||||||||||| || ||||| |||||||| ||||| || |||||
Sbjct: 1594 tatctcggttccaagctcttgttcaatgcgatacaagttaaaacggtcctc 1544
to top
>dbj|AK101477.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033040P11, full
            insert sequence
          Length = 2148

 Score =  133 bits (67), Expect = 8e-28
 Identities = 142/167 (85%)
 Strand = Plus / Minus

                                                                        
Query: 466  atgagctgctatttacacaagttgtcttgttactcccagagtggggcatacaagattaat 525
            |||||||| |||||||||| ||| |||| ||||| ||||||   ||||||||||||   |
Sbjct: 1736 atgagctgatatttacacaggttatcttattacttccagagattggcatacaagatcgtt 1677

                                                                        
Query: 526  ctgccagacaactattggcaatatatcgtccggtctatctgaggaggtataggttttatc 585
            ||| |||| ||||||||||||||||| |  |||||||||||||| ||||| |||||||||
Sbjct: 1676 ctgtcagataactattggcaatatattgctcggtctatctgaggtggtattggttttatc 1617

                                                           
Query: 586  tcagttccaagctcctgctcaatccgatacaaattaaaccgatcctc 632
            || ||||||||||| || ||||| |||||||| ||||| || |||||
Sbjct: 1616 tcggttccaagctcttgttcaatgcgatacaagttaaaacggtcctc 1570
to top
>emb|AL663006.3|OSJN00204 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0039L24,
             complete sequence
          Length = 121056

 Score =  131 bits (66), Expect = 3e-27
 Identities = 132/154 (85%)
 Strand = Plus / Minus

                                                                         
Query: 462   cctgatgagctgctatttacacaagttgtcttgttactcccagagtggggcatacaagat 521
             |||||||||||| |||||||||| ||| |||| ||||| ||||||   ||||||||||||
Sbjct: 62076 cctgatgagctgatatttacacaggttatcttattacttccagagattggcatacaagat 62017

                                                                         
Query: 522   taatctgccagacaactattggcaatatatcgtccggtctatctgaggaggtataggttt 581
                |||| |||| ||||||||||||||||| |  |||||||||||||| ||||| |||||
Sbjct: 62016 cgttctgtcagataactattggcaatatattgctcggtctatctgaggtggtattggttt 61957

                                               
Query: 582   tatctcagttccaagctcctgctcaatccgatac 615
             |||||| ||||||||||| || ||||| ||||||
Sbjct: 61956 tatctcggttccaagctcttgttcaatgcgatac 61923
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  131 bits (66), Expect = 3e-27
 Identities = 132/154 (85%)
 Strand = Plus / Minus

                                                                            
Query: 462      cctgatgagctgctatttacacaagttgtcttgttactcccagagtggggcatacaagat 521
                |||||||||||| |||||||||| ||| |||| ||||| ||||||   ||||||||||||
Sbjct: 26622518 cctgatgagctgatatttacacaggttatcttattacttccagagattggcatacaagat 26622459

                                                                            
Query: 522      taatctgccagacaactattggcaatatatcgtccggtctatctgaggaggtataggttt 581
                   |||| |||| ||||||||||||||||| |  |||||||||||||| ||||| |||||
Sbjct: 26622458 cgttctgtcagataactattggcaatatattgctcggtctatctgaggtggtattggttt 26622399

                                                  
Query: 582      tatctcagttccaagctcctgctcaatccgatac 615
                |||||| ||||||||||| || ||||| ||||||
Sbjct: 26622398 tatctcggttccaagctcttgttcaatgcgatac 26622365
to top
>ref|XM_466991.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2325

 Score =  101 bits (51), Expect = 3e-18
 Identities = 84/95 (88%)
 Strand = Plus / Minus

                                                                        
Query: 538  tattggcaatatatcgtccggtctatctgaggaggtataggttttatctcagttccaagc 597
            |||||||||||||| |   |||| ||||||||||| || |||||||||||||| ||||||
Sbjct: 1642 tattggcaatatatagcttggtcaatctgaggaggaattggttttatctcagtcccaagc 1583

                                               
Query: 598  tcctgctcaatccgatacaaattaaaccgatcctc 632
            || |||||||||| |||||| ||||||||||||||
Sbjct: 1582 tcttgctcaatcctatacaagttaaaccgatcctc 1548
to top
>ref|XM_466992.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2433

 Score =  101 bits (51), Expect = 3e-18
 Identities = 84/95 (88%)
 Strand = Plus / Minus

                                                                        
Query: 538  tattggcaatatatcgtccggtctatctgaggaggtataggttttatctcagttccaagc 597
            |||||||||||||| |   |||| ||||||||||| || |||||||||||||| ||||||
Sbjct: 1745 tattggcaatatatagcttggtcaatctgaggaggaattggttttatctcagtcccaagc 1686

                                               
Query: 598  tcctgctcaatccgatacaaattaaaccgatcctc 632
            || |||||||||| |||||| ||||||||||||||
Sbjct: 1685 tcttgctcaatcctatacaagttaaaccgatcctc 1651
to top
>dbj|AK072124.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013124F19, full
            insert sequence
          Length = 2325

 Score =  101 bits (51), Expect = 3e-18
 Identities = 84/95 (88%)
 Strand = Plus / Minus

                                                                        
Query: 538  tattggcaatatatcgtccggtctatctgaggaggtataggttttatctcagttccaagc 597
            |||||||||||||| |   |||| ||||||||||| || |||||||||||||| ||||||
Sbjct: 1642 tattggcaatatatagcttggtcaatctgaggaggaattggttttatctcagtcccaagc 1583

                                               
Query: 598  tcctgctcaatccgatacaaattaaaccgatcctc 632
            || |||||||||| |||||| ||||||||||||||
Sbjct: 1582 tcttgctcaatcctatacaagttaaaccgatcctc 1548
to top
>dbj|AK066504.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073G20, full
            insert sequence
          Length = 2433

 Score =  101 bits (51), Expect = 3e-18
 Identities = 84/95 (88%)
 Strand = Plus / Minus

                                                                        
Query: 538  tattggcaatatatcgtccggtctatctgaggaggtataggttttatctcagttccaagc 597
            |||||||||||||| |   |||| ||||||||||| || |||||||||||||| ||||||
Sbjct: 1745 tattggcaatatatagcttggtcaatctgaggaggaattggttttatctcagtcccaagc 1686

                                               
Query: 598  tcctgctcaatccgatacaaattaaaccgatcctc 632
            || |||||||||| |||||| ||||||||||||||
Sbjct: 1685 tcttgctcaatcctatacaagttaaaccgatcctc 1651
to top
>gb|BT018551.1| Zea mays clone EL01N0438H11.d mRNA sequence
          Length = 1188

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 83/94 (88%)
 Strand = Plus / Minus

                                                                       
Query: 539 attggcaatatatcgtccggtctatctgaggaggtataggttttatctcagttccaagct 598
           ||||||||||||| | | |||||||||||||||| || |||||||| ||||| |||||||
Sbjct: 464 attggcaatatatagcctggtctatctgaggaggaattggttttatttcagtcccaagct 405

                                             
Query: 599 cctgctcaatccgatacaaattaaaccgatcctc 632
           | || ||||||| |||||| ||||||||||||||
Sbjct: 404 cttgttcaatcctatacaagttaaaccgatcctc 371



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 462 cctgatgagctgctatttacacaagttgtct 492
           |||||||||||| |||||||| |||||||||
Sbjct: 541 cctgatgagctggtatttacaaaagttgtct 511
to top
>gb|AY108539.1| Zea mays PCO101054 mRNA sequence
          Length = 1061

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 83/94 (88%)
 Strand = Plus / Minus

                                                                       
Query: 539 attggcaatatatcgtccggtctatctgaggaggtataggttttatctcagttccaagct 598
           ||||||||||||| | | |||||||||||||||| || |||||||| ||||| |||||||
Sbjct: 560 attggcaatatatagcctggtctatctgaggaggaattggttttatttcagtcccaagct 501

                                             
Query: 599 cctgctcaatccgatacaaattaaaccgatcctc 632
           | || ||||||| |||||| ||||||||||||||
Sbjct: 500 cttgttcaatcctatacaagttaaaccgatcctc 467



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 462 cctgatgagctgctatttacacaagttgtct 492
           |||||||||||| |||||||| |||||||||
Sbjct: 637 cctgatgagctggtatttacaaaagttgtct 607
to top
>ref|XM_473293.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1497

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 84/96 (87%)
 Strand = Plus / Minus

                                                                        
Query: 537  ctattggcaatatatcgtccggtctatctgaggaggtataggttttatctcagttccaag 596
            ||||||||||||||| |  |||||||||||||| ||||| ||||||||||| ||||||||
Sbjct: 1497 ctattggcaatatattgctcggtctatctgaggtggtattggttttatctcggttccaag 1438

                                                
Query: 597  ctcctgctcaatccgatacaaattaaaccgatcctc 632
            ||| || ||||| |||||||| ||||| || |||||
Sbjct: 1437 ctcttgttcaatgcgatacaagttaaaacggtcctc 1402
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 68/78 (87%)
 Strand = Plus / Minus

                                                                            
Query: 538      tattggcaatatatcgtccggtctatctgaggaggtataggttttatctcagttccaagc 597
                |||||||||||||| |   |||| ||||||||||| || |||||||||||||| ||||||
Sbjct: 25791506 tattggcaatatatagcttggtcaatctgaggaggaattggttttatctcagtcccaagc 25791447

                                  
Query: 598      tcctgctcaatccgatac 615
                || |||||||||| ||||
Sbjct: 25791446 tcttgctcaatcctatac 25791429
to top
>dbj|AP004133.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1112_G03
          Length = 106401

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 68/78 (87%)
 Strand = Plus / Minus

                                                                         
Query: 538   tattggcaatatatcgtccggtctatctgaggaggtataggttttatctcagttccaagc 597
             |||||||||||||| |   |||| ||||||||||| || |||||||||||||| ||||||
Sbjct: 38112 tattggcaatatatagcttggtcaatctgaggaggaattggttttatctcagtcccaagc 38053

                               
Query: 598   tcctgctcaatccgatac 615
             || |||||||||| ||||
Sbjct: 38052 tcttgctcaatcctatac 38035
to top
>emb|AJ011564.1|YLAJ11564 Yarrowia lipolytica DHH1 gene
          Length = 2719

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 583  atctcagttccaagctcctgctcaatc 609
            |||||||||||||| ||||||||||||
Sbjct: 1734 atctcagttccaagttcctgctcaatc 1708
to top
>ref|XM_505690.1| Yarrowia lipolytica CLIB122, YALI0F21032g predicted mRNA
          Length = 1569

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 583  atctcagttccaagctcctgctcaatc 609
            |||||||||||||| ||||||||||||
Sbjct: 1163 atctcagttccaagttcctgctcaatc 1137
to top
>ref|NM_164898.1| Drosophila melanogaster maternal expression at 31B CG4916-RB,
            transcript variant B (me31B), mRNA
          Length = 1603

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 574  ataggttttatctcagttccaagctcctgctcaatccgatacaaattaaaccgatcctcg 633
            ||||| ||||| || |||||||| || |  |||||||||| || || |||||||||||||
Sbjct: 1358 ataggctttatttcggttccaagttctttttcaatccgatgcagatcaaaccgatcctcg 1299

               
Query: 634  tag 636
            |||
Sbjct: 1298 tag 1296
to top
>ref|NM_078809.2| Drosophila melanogaster maternal expression at 31B CG4916-RA,
            transcript variant A (me31B), mRNA
          Length = 1717

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 574  ataggttttatctcagttccaagctcctgctcaatccgatacaaattaaaccgatcctcg 633
            ||||| ||||| || |||||||| || |  |||||||||| || || |||||||||||||
Sbjct: 1472 ataggctttatttcggttccaagttctttttcaatccgatgcagatcaaaccgatcctcg 1413

               
Query: 634  tag 636
            |||
Sbjct: 1412 tag 1410
to top
>gb|AY051663.1| Drosophila melanogaster LD21247 full length cDNA
          Length = 1647

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 574  ataggttttatctcagttccaagctcctgctcaatccgatacaaattaaaccgatcctcg 633
            ||||| ||||| || |||||||| || |  |||||||||| || || |||||||||||||
Sbjct: 1386 ataggctttatttcggttccaagttctttttcaatccgatgcagatcaaaccgatcctcg 1327

               
Query: 634  tag 636
            |||
Sbjct: 1326 tag 1324
to top
>gb|AC009849.7|AC009849 Drosophila melanogaster, chromosome 2L, region 31B-31C, BAC clone
             BACR07H08, complete sequence
          Length = 153505

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                         
Query: 574   ataggttttatctcagttccaagctcctgctcaatccgatacaaattaaaccgatcctcg 633
             ||||| ||||| || |||||||| || |  |||||||||| || || |||||||||||||
Sbjct: 69827 ataggctttatttcggttccaagttctttttcaatccgatgcagatcaaaccgatcctcg 69768

                
Query: 634   tag 636
             |||
Sbjct: 69767 tag 69765
to top
>gb|AE003628.2| Drosophila melanogaster chromosome 2L, section 37 of 83 of the
            complete sequence
          Length = 269102

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 574  ataggttttatctcagttccaagctcctgctcaatccgatacaaattaaaccgatcctcg 633
            ||||| ||||| || |||||||| || |  |||||||||| || || |||||||||||||
Sbjct: 4045 ataggctttatttcggttccaagttctttttcaatccgatgcagatcaaaccgatcctcg 3986

               
Query: 634  tag 636
            |||
Sbjct: 3985 tag 3983
to top
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica
          Length = 4003362

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                          
Query: 583     atctcagttccaagctcctgctcaatc 609
               |||||||||||||| ||||||||||||
Sbjct: 2797749 atctcagttccaagttcctgctcaatc 2797775
to top
>gb|M59926.1|DROHELI D.melanogaster RNA helicase mRNA, complete cds
          Length = 1546

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 574  ataggttttatctcagttccaagctcctgctcaatccgatacaaattaaaccgatcctcg 633
            ||||| ||||| || |||||||| || |  |||||||||| || || |||||||||||||
Sbjct: 1295 ataggctttatttcggttccaagttctttttcaatccgatgcagatcaaaccgatcctcg 1236

               
Query: 634  tag 636
            |||
Sbjct: 1235 tag 1233
to top
>ref|NM_116291.3| Arabidopsis thaliana ATP binding / ATP-dependent helicase/ helicase/
            nucleic acid binding AT4G00660 transcript variant
            AT4G00660.2 mRNA, complete cds
          Length = 2744

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 583  atctcagttccaagctcctgctcaatccg 611
            ||||| ||||||||||| |||||||||||
Sbjct: 1853 atctccgttccaagctcttgctcaatccg 1825
to top
>ref|NM_179204.1| Arabidopsis thaliana ATP binding / ATP-dependent helicase/ helicase/
            nucleic acid binding AT4G00660 transcript variant
            AT4G00660.1 mRNA, complete cds
          Length = 2787

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 583  atctcagttccaagctcctgctcaatccg 611
            ||||| ||||||||||| |||||||||||
Sbjct: 1853 atctccgttccaagctcttgctcaatccg 1825
to top
>gb|AY113985.1| Arabidopsis thaliana putative RNA helicase (At4g00660) mRNA, complete
            cds
          Length = 1549

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 583  atctcagttccaagctcctgctcaatccg 611
            ||||| ||||||||||| |||||||||||
Sbjct: 1472 atctccgttccaagctcttgctcaatccg 1444
to top
>gb|AY080837.1| Arabidopsis thaliana putative RNA helicase (At4g00660) mRNA, complete
            cds
          Length = 2319

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 583  atctcagttccaagctcctgctcaatccg 611
            ||||| ||||||||||| |||||||||||
Sbjct: 1843 atctccgttccaagctcttgctcaatccg 1815
to top
>emb|AL161472.2|ATCHRIV2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 2
          Length = 197975

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 583   atctcagttccaagctcctgctcaatccg 611
             ||||| ||||||||||| |||||||||||
Sbjct: 84079 atctccgttccaagctcttgctcaatccg 84051
to top
>gb|AC083984.7| Homo sapiens chromosome 11, clone RP11-401C19, complete sequence
          Length = 117149

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 15    tgaaccgaacaaacactcctt 35
             |||||||||||||||||||||
Sbjct: 67654 tgaaccgaacaaacactcctt 67674
to top
>emb|AJ010460.1|ATH010460 Arabidopsis thaliana mRNA for DEAD box RNA helicase, RH8
          Length = 2015

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 583  atctcagttccaagctcctgctcaatccg 611
            ||||| ||||||||||| |||||||||||
Sbjct: 1534 atctccgttccaagctcttgctcaatccg 1506
to top
>emb|BX828369.1|CNS0A2CA Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH80ZF11 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 2550

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 583  atctcagttccaagctcctgctcaatccg 611
            ||||| ||||||||||| |||||||||||
Sbjct: 1768 atctccgttccaagctcttgctcaatccg 1740
to top
>gb|AC007513.40| Homo sapiens 12 BAC RP11-510I5 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 147118

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 198    ctcacagaatgacctgtagaa 218
              |||||||||||||||||||||
Sbjct: 118758 ctcacagaatgacctgtagaa 118738
to top
>gb|AF058919.2|F6N23 Arabidopsis thaliana BAC F6N23
          Length = 91849

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 583   atctcagttccaagctcctgctcaatccg 611
             ||||| ||||||||||| |||||||||||
Sbjct: 65205 atctccgttccaagctcttgctcaatccg 65177
to top
>dbj|AP006477.2| Homo sapiens genomic DNA, chromosome 11, clone:RP11-1335O1, complete
             sequence
          Length = 77332

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 15    tgaaccgaacaaacactcctt 35
             |||||||||||||||||||||
Sbjct: 18473 tgaaccgaacaaacactcctt 18453
to top
>gb|DP000012.1| Macropus eugenii target 1 genomic scaffold
          Length = 1996640

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 440    cataaagatcagacaaatga 459
              ||||||||||||||||||||
Sbjct: 413525 cataaagatcagacaaatga 413506
to top
>gb|AC137871.18| Mus musculus chromosome 15, clone RP23-41B9, complete sequence
          Length = 223529

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 583   atctcagttccaagctcctgctca 606
             |||||||| |||||||||||||||
Sbjct: 51816 atctcagtgccaagctcctgctca 51839
to top
>emb|CR956374.5| Pig DNA sequence from clone CH242-153C17 on chromosome 17, complete
             sequence
          Length = 118034

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 246   aagaaaagagatcttacagt 265
             ||||||||||||||||||||
Sbjct: 16302 aagaaaagagatcttacagt 16283
to top
>gb|AC121801.2| Mus musculus BAC clone RP23-432P18 from 14, complete sequence
          Length = 194612

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 570   aggtataggttttatctcag 589
             ||||||||||||||||||||
Sbjct: 63731 aggtataggttttatctcag 63750
to top
>gb|AC158986.2| Mus musculus BAC clone RP23-284L2 from chromosome 15, complete sequence
          Length = 226001

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 583   atctcagttccaagctcctgctca 606
             |||||||| |||||||||||||||
Sbjct: 43445 atctcagtgccaagctcctgctca 43422
to top
>emb|CR558303.7| Zebrafish DNA sequence from clone CH211-183C15 in linkage group 13,
             complete sequence
          Length = 155098

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 448   tcagacaaatgaatcctgat 467
             ||||||||||||||||||||
Sbjct: 69042 tcagacaaatgaatcctgat 69061
to top
>emb|CR318632.9| Zebrafish DNA sequence from clone CH211-113N10 in linkage group 5,
             complete sequence
          Length = 143278

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 448   tcagacaaatgaatcctgat 467
             ||||||||||||||||||||
Sbjct: 43158 tcagacaaatgaatcctgat 43177
to top
>gb|AC069066.22| Homo sapiens 3 BAC RP11-261E7 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 146446

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 425    caacttaagatacaccataa 444
              ||||||||||||||||||||
Sbjct: 123386 caacttaagatacaccataa 123367
to top
>dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, complete genome
          Length = 2685015

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 532     gacaactattggcaatatat 551
               ||||||||||||||||||||
Sbjct: 2033090 gacaactattggcaatatat 2033109
to top
>emb|BX294187.6| Zebrafish DNA sequence from clone CH211-233E16 in linkage group 16,
             complete sequence
          Length = 74464

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                         
Query: 459   aatcctgatgagctgcta-tttacacaa 485
             |||||||||||||||||| |||||||||
Sbjct: 59502 aatcctgatgagctgctagtttacacaa 59475
to top
>gb|AC106053.6| Homo sapiens BAC clone RP11-818B6 from 2, complete sequence
          Length = 178810

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 577   ggttttatctcagttccaag 596
             ||||||||||||||||||||
Sbjct: 14191 ggttttatctcagttccaag 14210
to top
>gb|AC151045.3| Macropus eugenii clone ME_KBa-444G7, complete sequence
          Length = 108527

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 440   cataaagatcagacaaatga 459
             ||||||||||||||||||||
Sbjct: 67191 cataaagatcagacaaatga 67172
to top
>gb|AC104058.4| Homo sapiens BAC clone RP13-513D10 from 2, complete sequence
          Length = 122230

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 477   tttacacaagttgtcttgtt 496
             ||||||||||||||||||||
Sbjct: 30599 tttacacaagttgtcttgtt 30580
to top
>gb|AC145408.3| Macropus eugenii clone ME_KBa-210L14, complete sequence
          Length = 175088

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 440    cataaagatcagacaaatga 459
              ||||||||||||||||||||
Sbjct: 174232 cataaagatcagacaaatga 174213
to top
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 451     gacaaatgaatcctgatgag 470
               ||||||||||||||||||||
Sbjct: 3760417 gacaaatgaatcctgatgag 3760398
to top
>emb|AL929534.12| Mouse DNA sequence from clone RP23-275L13 on chromosome 2, complete
              sequence
          Length = 190466

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 449    cagacaaatgaatcctgatgagct 472
              ||||| ||||||||||||||||||
Sbjct: 180459 cagactaatgaatcctgatgagct 180436


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,375,821
Number of Sequences: 3902068
Number of extensions: 5375821
Number of successful extensions: 88183
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 87964
Number of HSP's gapped (non-prelim): 220
length of query: 636
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 613
effective length of database: 17,143,297,704
effective search space: 10508841492552
effective search space used: 10508841492552
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top