ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags17e14 |
|---|---|
| Clone Library Name | barley_pub |
>PRP8_MOUSE (Q99PV0) Pre-mRNA-processing-splicing factor 8 (Splicing factor Prp8)| Length = 2335 Score = 266 bits (681), Expect = 4e-71 Identities = 114/161 (70%), Positives = 139/161 (86%) Frame = -2 Query: 732 LGWMHTQPNEAPQLSPQDLTSHAKILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSG 553 LGW+HTQPNE+PQLSPQD+T+HAKI+ +N WDGEK II+TCSFTPGSC+LTAYKLTPSG Sbjct: 2175 LGWIHTQPNESPQLSPQDVTTHAKIMADNPSWDGEKTIIITCSFTPGSCTLTAYKLTPSG 2234 Query: 552 YEWARGNKDNGSNPQGYLPTHYEKVQMLLSDRFLGFYMVPDNAPWNYNFMGVKHDPLMKY 373 YEW R N D G+NP+GYLP+HYE+VQMLLSDRFLGF+MVP + WNYNFMGV+HDP MKY Sbjct: 2235 YEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWNYNFMGVRHDPNMKY 2294 Query: 372 SMKLGTPRDFYHEDHRPTHFLEFSNIEEGEVAEGDREDTFS 250 ++L P++FYHE HRP+HFL F+ ++EGEV DRED ++ Sbjct: 2295 ELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA 2335
>PRP8_HUMAN (Q6P2Q9) Pre-mRNA-processing-splicing factor 8 (Splicing factor Prp8)| (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220) Length = 2335 Score = 266 bits (681), Expect = 4e-71 Identities = 114/161 (70%), Positives = 139/161 (86%) Frame = -2 Query: 732 LGWMHTQPNEAPQLSPQDLTSHAKILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSG 553 LGW+HTQPNE+PQLSPQD+T+HAKI+ +N WDGEK II+TCSFTPGSC+LTAYKLTPSG Sbjct: 2175 LGWIHTQPNESPQLSPQDVTTHAKIMADNPSWDGEKTIIITCSFTPGSCTLTAYKLTPSG 2234 Query: 552 YEWARGNKDNGSNPQGYLPTHYEKVQMLLSDRFLGFYMVPDNAPWNYNFMGVKHDPLMKY 373 YEW R N D G+NP+GYLP+HYE+VQMLLSDRFLGF+MVP + WNYNFMGV+HDP MKY Sbjct: 2235 YEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWNYNFMGVRHDPNMKY 2294 Query: 372 SMKLGTPRDFYHEDHRPTHFLEFSNIEEGEVAEGDREDTFS 250 ++L P++FYHE HRP+HFL F+ ++EGEV DRED ++ Sbjct: 2295 ELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA 2335
>PRP8_CAEEL (P34369) Pre-mRNA-splicing factor 8 homolog| Length = 2329 Score = 239 bits (611), Expect = 5e-63 Identities = 104/162 (64%), Positives = 126/162 (77%), Gaps = 1/162 (0%) Frame = -2 Query: 732 LGWMHTQPNEAPQLSPQDLTSHAKILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSG 553 LGWMHTQPNE PQLSPQD+T+HAK+L +N WDGEK +++TCSFTPGS SLTAYKLTPSG Sbjct: 2168 LGWMHTQPNELPQLSPQDVTTHAKLLTDNISWDGEKTVMITCSFTPGSVSLTAYKLTPSG 2227 Query: 552 YEWARGNKDNGSNPQGYLPTHYEKVQMLLSDRFLGFYMVPDNAPWNYNFMGVKHDPLMKY 373 YEW + N D G+NP+GY+PTHYEKVQMLLSDRFLG++MVP N WNYNF G + P MK+ Sbjct: 2228 YEWGKANTDKGNNPKGYMPTHYEKVQMLLSDRFLGYFMVPSNGVWNYNFQGQRWSPAMKF 2287 Query: 372 SMKLGTPRDFYHEDHRPTHFLEFSNIEEG-EVAEGDREDTFS 250 + L P+++YHEDHRP HF F ++ DRED F+ Sbjct: 2288 DVCLSNPKEYYHEDHRPVHFHNFKAFDDPLGTGSADREDAFA 2329
>PRP8_YEAST (P33334) Pre-mRNA-splicing factor 8| Length = 2413 Score = 131 bits (329), Expect = 2e-30 Identities = 65/162 (40%), Positives = 93/162 (57%), Gaps = 1/162 (0%) Frame = -2 Query: 732 LGWMHTQPNEAPQLSPQDLTSHAKILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSG 553 LGW+HTQ E ++ ++ +H+K+ + K+ CI ++ TPGS SL+AY LT G Sbjct: 2256 LGWIHTQTEELKFMAASEVATHSKLFADKKR----DCIDISIFSTPGSVSLSAYNLTDEG 2311 Query: 552 YEWARGNKD-NGSNPQGYLPTHYEKVQMLLSDRFLGFYMVPDNAPWNYNFMGVKHDPLMK 376 Y+W NKD +G+ PT Q+LLSDR G +++P WNY FMG + Sbjct: 2312 YQWGEENKDIMNVLSEGFEPTFSTHAQLLLSDRITGNFIIPSGNVWNYTFMGTAFNQEGD 2371 Query: 375 YSMKLGTPRDFYHEDHRPTHFLEFSNIEEGEVAEGDREDTFS 250 Y+ K G P +FY+E HRP HFL+FS + E E ++ D FS Sbjct: 2372 YNFKYGIPLEFYNEMHRPVHFLQFSELAGDEELEAEQIDVFS 2413
>TAAR3_MOUSE (Q5QD16) Trace amine-associated receptor 3| Length = 343 Score = 35.8 bits (81), Expect = 0.14 Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 1/94 (1%) Frame = -2 Query: 648 NKQWDGEKCIILTCSFTPGSCSLTAY-KLTPSGYEWARGNKDNGSNPQGYLPTHYEKVQM 472 NK W + TC FTPGS + Y K+ AR D +N +G + + K + Sbjct: 194 NKFWG--TILFTTCFFTPGSIMVGIYGKIFIVSRRHARALSDMPANTKGAVGKNLSKKKD 251 Query: 471 LLSDRFLGFYMVPDNAPWNYNFMGVKHDPLMKYS 370 + + LG M A W F+ V DP + YS Sbjct: 252 RKAAKTLGIVMGVFLACWLPCFLAVLIDPYLDYS 285
>TAAR3_HUMAN (Q9P1P4) Trace amine-associated receptor 3 (G-protein coupled| receptor 57) Length = 343 Score = 35.0 bits (79), Expect = 0.24 Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 1/94 (1%) Frame = -2 Query: 648 NKQWDGEKCIILTCSFTPGSCSLTAY-KLTPSGYEWARGNKDNGSNPQGYLPTHYEKVQM 472 NK W + TC FTPGS + Y K+ + AR N +G + H K + Sbjct: 194 NKFWG--TILFTTCFFTPGSIMVGIYGKIFIVSKQHARVISHVPENTKGAVKKHLSKKKD 251 Query: 471 LLSDRFLGFYMVPDNAPWNYNFMGVKHDPLMKYS 370 + + LG M A W F+ V DP + YS Sbjct: 252 RKAAKTLGIVMGVFLACWLPCFLAVLIDPYLDYS 285
>KR106_HUMAN (P60371) Keratin-associated protein 10-6 (Keratin-associated| protein 10.6) (High sulfur keratin-associated protein 10.6) (Keratin-associated protein 18-6) (Keratin-associated protein 18.6) Length = 365 Score = 34.7 bits (78), Expect = 0.31 Identities = 33/114 (28%), Positives = 41/114 (35%), Gaps = 2/114 (1%) Frame = +3 Query: 321 LACGPRGR-SRGVCPASCYTSSAGRA*LP*SCSSTERCPEPCRIQGSGR*EASGPSRSEL 497 L C P R S CP +C S P T C C Q S + S + Sbjct: 55 LVCTPVSRVSSPCCPVTCEPS-------PCQSGCTSSCTPSCCQQSSCQLACCASSPCQQ 107 Query: 498 EDNLVGCSRCPCCHGPTHNHLVSICMQSTSTILG*SCRSK*CTSHH-PTACCSP 656 + C + CC VS+C +S SC+S CTS ACC P Sbjct: 108 ACCVPVCCKTVCCKPVC---CVSVCCGDSSCCQQSSCQSACCTSSPCQQACCVP 158
>STABP_RAT (Q8R424) STAM-binding protein (EC 3.1.2.15) (Associated molecule| with the SH3 domain of STAM) Length = 424 Score = 32.7 bits (73), Expect = 1.2 Identities = 24/79 (30%), Positives = 34/79 (43%) Frame = -2 Query: 732 LGWMHTQPNEAPQLSPQDLTSHAKILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSG 553 LGW+HT P + LS DL +H + Q + I + CS P +KLT G Sbjct: 331 LGWIHTHPTQTAFLSSVDLHTHC-----SYQMMLPESIAIVCS--PKFQETGFFKLTDYG 383 Query: 552 YEWARGNKDNGSNPQGYLP 496 + + G +P G P Sbjct: 384 LQEISTCRQKGFHPHGRDP 402
>STABP_MOUSE (Q9CQ26) STAM-binding protein (EC 3.1.2.15) (Associated molecule| with the SH3 domain of STAM) Length = 424 Score = 32.7 bits (73), Expect = 1.2 Identities = 24/79 (30%), Positives = 34/79 (43%) Frame = -2 Query: 732 LGWMHTQPNEAPQLSPQDLTSHAKILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSG 553 LGW+HT P + LS DL +H + Q + I + CS P +KLT G Sbjct: 331 LGWIHTHPTQTAFLSSVDLHTHC-----SYQMMLPESIAIVCS--PKFQETGFFKLTDYG 383 Query: 552 YEWARGNKDNGSNPQGYLP 496 + + G +P G P Sbjct: 384 LQEISTCRQKGFHPHGRDP 402
>STABP_HUMAN (O95630) STAM-binding protein (EC 3.1.2.15) (Associated molecule| with the SH3 domain of STAM) Length = 424 Score = 32.3 bits (72), Expect = 1.5 Identities = 23/79 (29%), Positives = 33/79 (41%) Frame = -2 Query: 732 LGWMHTQPNEAPQLSPQDLTSHAKILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSG 553 LGW+HT P + LS DL +H + Q + + + CS P +KLT G Sbjct: 331 LGWIHTHPTQTAFLSSVDLHTHC-----SYQMMLPESVAIVCS--PKFQETGFFKLTDHG 383 Query: 552 YEWARGNKDNGSNPQGYLP 496 E + G +P P Sbjct: 384 LEEISSCRQKGFHPHSKDP 402
>KR510_HUMAN (Q6L8G5) Keratin-associated protein 5-10 (Keratin-associated| protein 5.10) (Ultrahigh sulfur keratin-associated protein 5.10) Length = 202 Score = 32.0 bits (71), Expect = 2.0 Identities = 32/115 (27%), Positives = 40/115 (34%) Frame = +3 Query: 312 GSVLACGPRGRSRGVCPASCYTSSAGRA*LP*SCSSTERCPEPCRIQGSGR*EASGPSRS 491 GS CG G S+G C SC S G C S C G + S Sbjct: 79 GSKGGCGSCGGSKGGC-GSCGGSKGG-------CGSCGGSKGGCGSCGGSKGGCGSCGGS 130 Query: 492 ELEDNLVGCSRCPCCHGPTHNHLVSICMQSTSTILG*SCRSK*CTSHHPTACCSP 656 + GCS+C CC + C QS SC + C ++CC P Sbjct: 131 KGGCGSCGCSQCNCCKPCCCSSGCGSCCQS-------SCCNPCCCQ---SSCCVP 175
>KEL2_YEAST (P50090) Kelch repeat-containing protein 2| Length = 882 Score = 32.0 bits (71), Expect = 2.0 Identities = 37/148 (25%), Positives = 60/148 (40%), Gaps = 5/148 (3%) Frame = -2 Query: 687 PQDLTSHAKILENNKQW--DGEKCIILTCSFTPGSCSLTAYKLTPSGYEWARGNKDNGSN 514 P LT+H + +NK W GE TP + S Y+ P+ EW++ K G Sbjct: 254 PPPLTNHTMVAYDNKLWVFGGE---------TPKTISNDTYRYDPAQSEWSK-VKTTGEK 303 Query: 513 P---QGYLPTHYEKVQMLLSDRFLGFYMVPDNAPWNYNFMGVKHDPLMKYSMKLGTPRDF 343 P Q + Y+ + +L + + N + N + +K L + MK G P++ Sbjct: 304 PPPIQEHASVVYKHLMCVLGGK--DTHNAYSNDVYFLNLLSLKWYKLPR--MKEGIPQE- 358 Query: 342 YHEDHRPTHFLEFSNIEEGEVAEGDRED 259 R H L E+ + GD+ D Sbjct: 359 -----RSGHSLTLMKNEKLLIMGGDKTD 381
>KRA54_HUMAN (Q6L8H1) Keratin-associated protein 5-4 (Keratin-associated protein| 5.4) (Ultrahigh sulfur keratin-associated protein 5.4) Length = 288 Score = 32.0 bits (71), Expect = 2.0 Identities = 35/125 (28%), Positives = 45/125 (36%), Gaps = 10/125 (8%) Frame = +3 Query: 312 GSVLACGPRGRSRGVCPASCYTSSAGRA*LP*SCSSTERCPEPCRIQGSGR*EASGPSRS 491 GS CG G S+G C SC S G C S C G + S Sbjct: 136 GSKGGCGSCGGSKGGC-VSCGGSKGG-------CGSCGGSKGGCGSCGGSKGGCGSCGGS 187 Query: 492 ELEDNLVGCSRCPCCHG-PTHNHLVSICMQS-------TSTILG*SCRSK*CTSHH--PT 641 + GCS+C CC + S C QS +S+ G SC C + + Sbjct: 188 KGGCGSCGCSQCSCCKPCCCSSGCGSSCCQSSCCKPCCSSSGCGSSCCQSSCCKPYCCQS 247 Query: 642 ACCSP 656 +CC P Sbjct: 248 SCCKP 252
>Y2484_DEIRA (Q9RRK5) Hypothetical WD-repeat protein DR2484| Length = 267 Score = 31.6 bits (70), Expect = 2.6 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 2/84 (2%) Frame = -2 Query: 639 WDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWARGNKDNGSNPQGYLPTHYEKVQMLLS- 463 +DGEK +L + TPG ++TA K +P G W D Q + E+V+ LS Sbjct: 38 YDGEK--VLFQATTPGLNAVTASKFSPDG-RWLLNIADGSGYVQLWDTAKGERVKTFLSV 94 Query: 462 -DRFLGFYMVPDNAPWNYNFMGVK 394 R G PD+ +F G K Sbjct: 95 YFRIFGADFTPDSERLLLDFSGSK 118
>KRA53_HUMAN (Q6L8H2) Keratin-associated protein 5-3 (Keratin-associated protein| 5.3) (Ultrahigh sulfur keratin-associated protein 5.3) (Keratin-associated protein 5-9) (Keratin-associated protein 5.9) (UHS KerB-like) Length = 238 Score = 31.2 bits (69), Expect = 3.5 Identities = 32/124 (25%), Positives = 43/124 (34%), Gaps = 10/124 (8%) Frame = +3 Query: 315 SVLACGPRGRSRGV------CPASCYTSSAGRA*LP*SCSSTERCPEPCRIQGSGR*EAS 476 S +CG G S+GV C C + + SC C C G + Sbjct: 53 SCSSCGSCGGSKGVCGSCGGCKGGCGSCGGSKGGCGSSCCVPVCCSSSCGSCGGSKGVCG 112 Query: 477 GPSRSELEDNLVGCSRC----PCCHGPTHNHLVSICMQSTSTILG*SCRSK*CTSHHPTA 644 S+ GCS+C PCC + S C QS SC C+ ++ Sbjct: 113 FRGGSKGGCGSCGCSQCSCYKPCC---CSSGCGSSCCQS-------SCCKPSCSQ---SS 159 Query: 645 CCSP 656 CC P Sbjct: 160 CCKP 163
>STALP_PONPY (Q5R558) AMSH-like protease (EC 3.1.2.15) (AMSH-LP) (STAM-binding| protein-like 1) Length = 436 Score = 30.8 bits (68), Expect = 4.5 Identities = 22/74 (29%), Positives = 32/74 (43%) Frame = -2 Query: 732 LGWMHTQPNEAPQLSPQDLTSHAKILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSG 553 LGW+HT P + LS DL +H + Q + I + CS P ++LT +G Sbjct: 343 LGWIHTHPTQTAFLSSVDLHTHC-----SYQLMLSEAIAIVCS--PKHKDTGIFRLTNAG 395 Query: 552 YEWARGNKDNGSNP 511 K G +P Sbjct: 396 MLEVSACKKKGFHP 409
>STABP_BRARE (Q6TH47) STAM-binding protein-like (EC 3.1.2.15)| Length = 418 Score = 30.8 bits (68), Expect = 4.5 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 3/88 (3%) Frame = -2 Query: 732 LGWMHTQPNEAPQLSPQDLTSHAKILENNKQWDGEKCIILTCS---FTPGSCSLTAYKLT 562 LGW+HT P + LS DL +H + Q + I + CS G LT Y + Sbjct: 325 LGWIHTHPTQTAFLSSVDLHTHC-----SYQMMLPESIAIVCSPKFNETGYFRLTDYGMD 379 Query: 561 PSGYEWARGNKDNGSNPQGYLPTHYEKV 478 G RG + +P + +H+ + Sbjct: 380 DVGTCKQRGFHPHPKDPPLFAASHHVSI 407
>KRA59_HUMAN (P26371) Keratin-associated protein 5-9 (Keratin-associated protein| 5.9) (Ultrahigh sulfur keratin-associated protein 5.9) (Keratin, cuticle, ultrahigh sulfur 1) (Keratin, ultra high-sulfur matrix protein A) (UHS keratin A) (UHS KerA) Length = 169 Score = 30.4 bits (67), Expect = 5.9 Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 7/76 (9%) Frame = +3 Query: 330 GPRGRSRGVCPASCYTSSAGRA*LP*SCSSTERCPEP-------CRIQGSGR*EASGPSR 488 G G S G C +SC + +G SC + C +P C G+ Sbjct: 8 GGCGSSCGGCDSSCGSCGSGCRGCGPSCCAPVYCCKPVCCCVPACSCSSCGKRGCGSCGG 67 Query: 489 SELEDNLVGCSRCPCC 536 S+ GCS+C CC Sbjct: 68 SKGGCGSCGCSQCSCC 83
>LIRB5_HUMAN (O75023) Leukocyte immunoglobulin-like receptor subfamily B member| 5 precursor (Leukocyte immunoglobulin-like receptor 8) (LIR-8) (CD85c antigen) Length = 590 Score = 30.4 bits (67), Expect = 5.9 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = +1 Query: 499 KITLWVAPVVLVATGPLITTWCQ 567 K TLW P ++A G +T WCQ Sbjct: 28 KPTLWAEPASVIARGKPVTLWCQ 50
>STALP_HUMAN (Q96FJ0) AMSH-like protease (EC 3.1.2.15) (AMSH-LP) (STAM-binding| protein-like 1) Length = 436 Score = 30.4 bits (67), Expect = 5.9 Identities = 22/74 (29%), Positives = 32/74 (43%) Frame = -2 Query: 732 LGWMHTQPNEAPQLSPQDLTSHAKILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSG 553 LGW+HT P + LS DL +H + Q + I + CS P ++LT +G Sbjct: 343 LGWIHTHPTQTAFLSSVDLHTHC-----SYQLMLPEAIAIVCS--PKHKDTGIFRLTNAG 395 Query: 552 YEWARGNKDNGSNP 511 K G +P Sbjct: 396 MLEVSACKKKGFHP 409
>FANCM_HUMAN (Q8IYD8) Fanconi anemia group M protein (EC 3.6.1.-) (ATP-dependent| RNA helicase FANCM) (Protein FACM) (Fanconi anemia-associated polypeptide of 250 kDa) (FAAP250) (Protein Hef ortholog) Length = 2048 Score = 30.4 bits (67), Expect = 5.9 Identities = 33/126 (26%), Positives = 50/126 (39%), Gaps = 7/126 (5%) Frame = -2 Query: 711 PNEAPQLSPQDLTSHAKILENNKQWDGEKCIILT-CSFTPGSCSLTAYKLTPSGYEWARG 535 PN+ ++ + I EN + E C++LT C FT S S A + SGY Sbjct: 895 PNDKRTSDTDEIAATCTINENVIK---EPCVLLTECQFTNKSTSSLAGNVLDSGYNSFND 951 Query: 534 NKDNGSNPQGYLPTHYEKVQMLLSDRFLGFYMVPDNAPWNY-NFMGVKHDPL-----MKY 373 K SN +LP E + D+F + + N F+ PL ++Y Sbjct: 952 EKSVSSNL--FLPFEEELYIVRTDDQFYNCHSLTKEVLANVERFLSYSPPPLSGLSDLEY 1009 Query: 372 SMKLGT 355 + GT Sbjct: 1010 EIAKGT 1015
>RPOA_LDVC (Q06502) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:| Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha papain-like cysteine proteinase (EC 3.4.22.-) (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase (EC 3.4.22.-) (PCP1 Length = 3637 Score = 30.4 bits (67), Expect = 5.9 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 6/76 (7%) Frame = -2 Query: 609 CSFTPGSCSLTAYK-----LTPSGYEWARGNKDNGSNPQGYLPTHYEK-VQMLLSDRFLG 448 C F ++ YK ++P GY W G+ D+ P G EK + L +D + Sbjct: 175 CPFADARANVWRYKGNTVFVSPQGYLWTTGSNDSVPEPWGEDRRLCEKIISSLPADHLVK 234 Query: 447 FYMVPDNAPWNYNFMG 400 N P++Y+F G Sbjct: 235 INF--SNYPFDYSFTG 248
>LIRB5_PANTR (Q8MJZ7) Leukocyte immunoglobulin-like receptor subfamily B member| 5 precursor (Leukocyte immunoglobulin-like receptor 8) (LIR-8) Length = 643 Score = 30.4 bits (67), Expect = 5.9 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = +1 Query: 499 KITLWVAPVVLVATGPLITTWCQ 567 K TLW P ++A G +T WCQ Sbjct: 28 KPTLWAEPASVIARGKPVTLWCQ 50
>KR109_HUMAN (P60411) Keratin-associated protein 10-9 (Keratin-associated| protein 10.9) (High sulfur keratin-associated protein 10.9) (Keratin-associated protein 18-9) (Keratin-associated protein 18.9) Length = 292 Score = 30.0 bits (66), Expect = 7.7 Identities = 30/101 (29%), Positives = 36/101 (35%), Gaps = 1/101 (0%) Frame = +3 Query: 357 CPASCYTSSAGRA*LP*SCSSTERCPEPCRIQGSGR*EASGPSRSELEDNLVGCSRCPCC 536 CP SC P C+++ P PC + SR V C PC Sbjct: 22 CPESCCE--------PPCCATSCCAPAPCLTL-----VCTPVSRVSSPCCQVTCEPSPCQ 68 Query: 537 HGPTHNHLVSICMQSTSTILG*SCRSK*CTSHH-PTACCSP 656 G T + S C QS SC+ CTS ACC P Sbjct: 69 SGCTSSCTPSCCQQS-------SCQPAYCTSSPCQQACCVP 102
>YD57_SCHPO (Q10310) Hypothetical protein C6C3.07 in chromosome I| Length = 515 Score = 30.0 bits (66), Expect = 7.7 Identities = 13/49 (26%), Positives = 23/49 (46%) Frame = -2 Query: 558 SGYEWARGNKDNGSNPQGYLPTHYEKVQMLLSDRFLGFYMVPDNAPWNY 412 SG + +DNG+ Q Y+P YE++ + ++ + P NY Sbjct: 181 SGESEKKSEEDNGNGEQNYIPEQYERLDSPVKEKIINTCCKGKAEPPNY 229
>EX7L_CHLTR (O84333) Probable exodeoxyribonuclease VII large subunit (EC| 3.1.11.6) (Exonuclease VII large subunit) Length = 516 Score = 30.0 bits (66), Expect = 7.7 Identities = 13/46 (28%), Positives = 28/46 (60%) Frame = +2 Query: 56 LYSTVLEGQAYNTRY*SQETENIIQHVTSKLHTSQSSLFKTEQSSL 193 LY++ L+ + N ++ +Q + NI+ ++ +LH + +S +T Q L Sbjct: 381 LYTSCLKNELLNLQHHTQHSRNILSQLSRRLHIAIASSQQTHQECL 426
>SEM3E_MOUSE (P70275) Semaphorin-3E precursor (Semaphorin H) (Sema H)| Length = 775 Score = 30.0 bits (66), Expect = 7.7 Identities = 12/35 (34%), Positives = 22/35 (62%) Frame = -2 Query: 507 GYLPTHYEKVQMLLSDRFLGFYMVPDNAPWNYNFM 403 G++ T ++ ++L +F+G YM+PDN + N M Sbjct: 210 GHIRTEHDDERLLKEPKFVGSYMIPDNEDRDDNKM 244 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 101,327,807 Number of Sequences: 219361 Number of extensions: 2063758 Number of successful extensions: 5700 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 5435 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5689 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7592921998 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
