ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags16p06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK100460.1| Oryza sativa (japonica cultivar-group) cDNA clon... 145 1e-31
2gb|AY105958.1| Zea mays PCO114043 mRNA sequence 141 2e-30
3ref|NM_192811.1| Oryza sativa (japonica cultivar-group), predic... 137 3e-29
4gb|AY109071.1| Zea mays PCO122073 mRNA sequence 113 4e-22
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 105 1e-19
6dbj|AP003328.3| Oryza sativa (japonica cultivar-group) genomic D... 105 1e-19
7dbj|AP002897.2| Oryza sativa (japonica cultivar-group) genomic D... 72 1e-09
8ref|NM_001031451.1| Gallus gallus FYN binding protein (FYB-120/1... 44 0.31
9gb|AC157930.7| Mus musculus chromosome 5, clone RP24-151E22, com... 44 0.31
10emb|AJ720995.1| Gallus gallus mRNA for hypothetical protein, clo... 44 0.31
11gb|AC102477.18| Mus musculus chromosome 5, clone RP24-405C17, co... 44 0.31
12gb|AC122230.4| Mus musculus BAC clone RP23-133F23 from 9, comple... 42 1.2
13gb|AC139378.4| Mus musculus BAC clone RP23-265F20 from 9, comple... 42 1.2
14gb|AC140465.2| Mus musculus BAC clone RP24-389J3 from chromosome... 40 4.9
15ref|XM_726134.1| Plasmodium yoelii yoelii str. 17XNL origin reco... 40 4.9
16ref|XM_668171.1| Plasmodium berghei strain ANKA hypothetical pro... 40 4.9
17ref|XM_964220.1| PREDICTED: Tribolium castaneum similar to CG400... 40 4.9
18gb|AY014830.1| Mus musculus lysyl hydroxylase 3 (Plod3) gene, co... 40 4.9
19gb|AC154505.3| Mus musculus BAC clone RP24-92J14 from chromosome... 40 4.9
20gb|AC015912.16| Homo sapiens chromosome 17, clone RP11-670E13, c... 40 4.9
21gb|AC106858.12| Homo sapiens chromosome 17, clone RP11-347L15, c... 40 4.9
22gb|AC147987.5| Mus musculus BAC clone RP24-456B4 from 5, complet... 40 4.9
23gb|AC147986.3| Mus musculus BAC clone RP24-404L1 from 5, complet... 40 4.9
24emb|CT025549.13| Mouse DNA sequence from clone RP24-235K10 on ch... 40 4.9 
>dbj|AK100460.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023091N11, full
            insert sequence
          Length = 1327

 Score =  145 bits (73), Expect = 1e-31
 Identities = 181/217 (83%)
 Strand = Plus / Minus

                                                                        
Query: 151  ttttttagtttcacttcttcggcgtatctgcataattccaggtgaatttcgcaaatgaag 210
            |||||||| || ||||||| ||||| || ||||| ||||||||| | |  |||||||| |
Sbjct: 1149 ttttttagctttacttctttggcgtgtcagcatacttccaggtgtaatgtgcaaatgagg 1090

                                                                        
Query: 211  tatattgccttccaccggccacatcttcttcgcgtatctcattgctaatctctttgaggt 270
            |||| || |||||||| || |||||||||||||||| ||   |    |||||||| ||||
Sbjct: 1089 tatactgtcttccaccagcgacatcttcttcgcgtacctggctagagatctctttcaggt 1030

                                                                        
Query: 271  catcttctgtgagcttcacctttaaggagtcaatgttggagtctagattcttgatcttag 330
            |||| || ||||| |||||||||||||||||||||||||  ||||| || || ||||| |
Sbjct: 1029 catcatccgtgaggttcacctttaaggagtcaatgttggcatctaggttttttatcttgg 970

                                                 
Query: 331  ttgtccctggtatcggaaccacatcatccccttgatg 367
            |||| |||||||| || ||||||||||||||||||||
Sbjct: 969  ttgttcctggtattgggaccacatcatccccttgatg 933
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>gb|AY105958.1| Zea mays PCO114043 mRNA sequence
          Length = 1434

 Score =  141 bits (71), Expect = 2e-30
 Identities = 174/207 (84%), Gaps = 1/207 (0%)
 Strand = Plus / Minus

                                                                        
Query: 164  cttcttcggcgtatctgcataattccaggtgaatttcgcaaatgaagtatattgccttcc 223
            |||||| |||||||| || || |||||||||   |  |||||||||||  |||| |||||
Sbjct: 1115 cttctttggcgtatcagcgtacttccaggtggtatgtgcaaatgaagtgaattgtcttcc 1056

                                                                        
Query: 224  accggccacatcttcttcgcgtatctcattgctaatctctttgaggtcatcttctgtgag 283
            ||| |||||||||||||| |||||||   |||  || ||||| || || || ||||| ||
Sbjct: 1055 accagccacatcttcttcccgtatctggctgcccatttctttcagatcttcgtctgtcag 996

                                                                        
Query: 284  cttcacctttaaggagtcaatgttggagtctagattcttgatctt-agttgtccctggta 342
             |||||||| ||||||||||||||||| |||||||||||||| ||  |||||||||||||
Sbjct: 995  tttcaccttcaaggagtcaatgttggaatctagattcttgattttgggttgtccctggta 936

                                       
Query: 343  tcggaaccacatcatccccttgatgca 369
            | |||||||||||||| ||||||||||
Sbjct: 935  taggaaccacatcatctccttgatgca 909
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>ref|NM_192811.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 888

 Score =  137 bits (69), Expect = 3e-29
 Identities = 171/205 (83%)
 Strand = Plus / Minus

                                                                       
Query: 163 acttcttcggcgtatctgcataattccaggtgaatttcgcaaatgaagtatattgccttc 222
           ||||||| ||||| || ||||| ||||||||| | |  |||||||| ||||| || ||||
Sbjct: 886 acttctttggcgtgtcagcatacttccaggtgtaatgtgcaaatgaggtatactgtcttc 827

                                                                       
Query: 223 caccggccacatcttcttcgcgtatctcattgctaatctctttgaggtcatcttctgtga 282
           |||| || |||||||||||||||| ||   |    |||||||| |||||||| || ||||
Sbjct: 826 caccagcgacatcttcttcgcgtacctggctagagatctctttcaggtcatcatccgtga 767

                                                                       
Query: 283 gcttcacctttaaggagtcaatgttggagtctagattcttgatcttagttgtccctggta 342
           | |||||||||||||||||||||||||  ||||| || || ||||| ||||| |||||||
Sbjct: 766 ggttcacctttaaggagtcaatgttggcatctaggttttttatcttggttgttcctggta 707

                                    
Query: 343 tcggaaccacatcatccccttgatg 367
           | || ||||||||||||||||||||
Sbjct: 706 ttgggaccacatcatccccttgatg 682
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>gb|AY109071.1| Zea mays PCO122073 mRNA sequence
          Length = 1331

 Score =  113 bits (57), Expect = 4e-22
 Identities = 129/153 (84%)
 Strand = Plus / Minus

                                                                        
Query: 213  tattgccttccaccggccacatcttcttcgcgtatctcattgctaatctctttgaggtca 272
            ||||| |||||||| |||||||||||| | |||||||   ||| ||| || || ||||| 
Sbjct: 1123 tattgtcttccaccagccacatcttctgcacgtatctggctgccaatttccttcaggtcc 1064

                                                                        
Query: 273  tcttctgtgagcttcacctttaaggagtcaatgttggagtctagattcttgatcttagtt 332
            ||  |||||||||||||||| |||||||||| |||||  ||||| |||||  | || |||
Sbjct: 1063 tcagctgtgagcttcaccttcaaggagtcaacgttggcatctaggttcttcgtttttgtt 1004

                                             
Query: 333  gtccctggtatcggaaccacatcatccccttga 365
            ||||||||||| |||||||||||||||||||||
Sbjct: 1003 gtccctggtataggaaccacatcatccccttga 971
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  105 bits (53), Expect = 1e-19
 Identities = 155/189 (82%)
 Strand = Plus / Plus

                                                                            
Query: 151      ttttttagtttcacttcttcggcgtatctgcataattccaggtgaatttcgcaaatgaag 210
                |||||||| || ||||||| ||||| || ||||| ||||||||| | |  |||||||| |
Sbjct: 24575936 ttttttagctttacttctttggcgtgtcagcatacttccaggtgtaatgtgcaaatgagg 24575995

                                                                            
Query: 211      tatattgccttccaccggccacatcttcttcgcgtatctcattgctaatctctttgaggt 270
                |||| || |||||||| || |||||||||||||||| ||   |    |||||||| ||||
Sbjct: 24575996 tatactgtcttccaccagcgacatcttcttcgcgtacctggctagagatctctttcaggt 24576055

                                                                            
Query: 271      catcttctgtgagcttcacctttaaggagtcaatgttggagtctagattcttgatcttag 330
                |||| || ||||| |||||||||||||||||||||||||  ||||| || || ||||| |
Sbjct: 24576056 catcatccgtgaggttcacctttaaggagtcaatgttggcatctaggttttttatcttgg 24576115

                         
Query: 331      ttgtccctg 339
                |||| ||||
Sbjct: 24576116 ttgttcctg 24576124



 Score = 48.1 bits (24), Expect = 0.020
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                                
Query: 336      cctggtatcggaaccacatcatccccttgatg 367
                |||||||| || ||||||||||||||||||||
Sbjct: 24576720 cctggtattgggaccacatcatccccttgatg 24576751
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>dbj|AP003328.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:B1040D09
          Length = 148102

 Score =  105 bits (53), Expect = 1e-19
 Identities = 155/189 (82%)
 Strand = Plus / Plus

                                                                        
Query: 151  ttttttagtttcacttcttcggcgtatctgcataattccaggtgaatttcgcaaatgaag 210
            |||||||| || ||||||| ||||| || ||||| ||||||||| | |  |||||||| |
Sbjct: 1899 ttttttagctttacttctttggcgtgtcagcatacttccaggtgtaatgtgcaaatgagg 1958

                                                                        
Query: 211  tatattgccttccaccggccacatcttcttcgcgtatctcattgctaatctctttgaggt 270
            |||| || |||||||| || |||||||||||||||| ||   |    |||||||| ||||
Sbjct: 1959 tatactgtcttccaccagcgacatcttcttcgcgtacctggctagagatctctttcaggt 2018

                                                                        
Query: 271  catcttctgtgagcttcacctttaaggagtcaatgttggagtctagattcttgatcttag 330
            |||| || ||||| |||||||||||||||||||||||||  ||||| || || ||||| |
Sbjct: 2019 catcatccgtgaggttcacctttaaggagtcaatgttggcatctaggttttttatcttgg 2078

                     
Query: 331  ttgtccctg 339
            |||| ||||
Sbjct: 2079 ttgttcctg 2087



 Score = 48.1 bits (24), Expect = 0.020
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                            
Query: 336  cctggtatcggaaccacatcatccccttgatg 367
            |||||||| || ||||||||||||||||||||
Sbjct: 2683 cctggtattgggaccacatcatccccttgatg 2714
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>dbj|AP002897.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0686E09
          Length = 156425

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 81/96 (84%)
 Strand = Plus / Plus

                                                                          
Query: 151    ttttttagtttcacttcttcggcgtatctgcataattccaggtgaatttcgcaaatgaag 210
              |||||||| || ||||||| ||||| || ||||| ||||||||| | |  |||||||| |
Sbjct: 156320 ttttttagctttacttctttggcgtgtcagcatacttccaggtgtaatgtgcaaatgagg 156379

                                                  
Query: 211    tatattgccttccaccggccacatcttcttcgcgta 246
              |||| || |||||||| || ||||||||||||||||
Sbjct: 156380 tatactgtcttccaccagcgacatcttcttcgcgta 156415
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>ref|NM_001031451.1| Gallus gallus FYN binding protein (FYB-120/130) (FYB), mRNA
          Length = 3618

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 133  atcactgtctccacaatctttt 154
            ||||||||||||||||||||||
Sbjct: 2310 atcactgtctccacaatctttt 2289
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>gb|AC157930.7| Mus musculus chromosome 5, clone RP24-151E22, complete sequence
          Length = 146346

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 275    ttctgtgagcttcacctttaaggagtcaat 304
              |||||||| ||| |||||||||||||||||
Sbjct: 114836 ttctgtgaccttgacctttaaggagtcaat 114865
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>emb|AJ720995.1| Gallus gallus mRNA for hypothetical protein, clone 32b13
          Length = 3618

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 133  atcactgtctccacaatctttt 154
            ||||||||||||||||||||||
Sbjct: 2310 atcactgtctccacaatctttt 2289
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>gb|AC102477.18| Mus musculus chromosome 5, clone RP24-405C17, complete sequence
          Length = 179495

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 275  ttctgtgagcttcacctttaaggagtcaat 304
            |||||||| ||| |||||||||||||||||
Sbjct: 5189 ttctgtgaccttgacctttaaggagtcaat 5160
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>gb|AC122230.4| Mus musculus BAC clone RP23-133F23 from 9, complete sequence
          Length = 183554

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 219    cttccaccggccacatcttct 239
              |||||||||||||||||||||
Sbjct: 138871 cttccaccggccacatcttct 138851
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>gb|AC139378.4| Mus musculus BAC clone RP23-265F20 from 9, complete sequence
          Length = 256632

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 219    cttccaccggccacatcttct 239
              |||||||||||||||||||||
Sbjct: 151824 cttccaccggccacatcttct 151844
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>gb|AC140465.2| Mus musculus BAC clone RP24-389J3 from chromosome 16, complete sequence
          Length = 189550

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   cacaatcttttttagtttca 163
             ||||||||||||||||||||
Sbjct: 33342 cacaatcttttttagtttca 33361
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>ref|XM_726134.1| Plasmodium yoelii yoelii str. 17XNL origin recognition complex
           subunit 2 (PY03235) partial mRNA
          Length = 1374

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 55  gacaattcacaagatgaaga 74
           ||||||||||||||||||||
Sbjct: 106 gacaattcacaagatgaaga 125
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>ref|XM_668171.1| Plasmodium berghei strain ANKA hypothetical protein (PB000518.03.0)
            partial mRNA
          Length = 1167

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 55   gacaattcacaagatgaaga 74
            ||||||||||||||||||||
Sbjct: 1078 gacaattcacaagatgaaga 1097
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>ref|XM_964220.1| PREDICTED: Tribolium castaneum similar to CG40084-PC.3 (LOC657784),
           mRNA
          Length = 2787

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 350 cacatcatccccttgatgca 369
           ||||||||||||||||||||
Sbjct: 858 cacatcatccccttgatgca 839
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>gb|AY014830.1| Mus musculus lysyl hydroxylase 3 (Plod3) gene, complete cds
          Length = 15549

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 273   tcttctgtgagcttcacctt 292
             ||||||||||||||||||||
Sbjct: 11337 tcttctgtgagcttcacctt 11356
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>gb|AC154505.3| Mus musculus BAC clone RP24-92J14 from chromosome 13, complete
            sequence
          Length = 199707

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 274  cttctgtgagcttcacctttaagg 297
            |||||||||||||||| |||||||
Sbjct: 6929 cttctgtgagcttcacttttaagg 6952
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>gb|AC015912.16| Homo sapiens chromosome 17, clone RP11-670E13, complete sequence
          Length = 118172

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 322  tgatcttagttgtccctggt 341
            ||||||||||||||||||||
Sbjct: 7153 tgatcttagttgtccctggt 7134
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>gb|AC106858.12| Homo sapiens chromosome 17, clone RP11-347L15, complete sequence
          Length = 160484

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 322   tgatcttagttgtccctggt 341
             ||||||||||||||||||||
Sbjct: 19005 tgatcttagttgtccctggt 19024
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>gb|AC147987.5| Mus musculus BAC clone RP24-456B4 from 5, complete sequence
          Length = 195371

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 273    tcttctgtgagcttcacctt 292
              ||||||||||||||||||||
Sbjct: 183078 tcttctgtgagcttcacctt 183097
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>gb|AC147986.3| Mus musculus BAC clone RP24-404L1 from 5, complete sequence
          Length = 177652

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 273    tcttctgtgagcttcacctt 292
              ||||||||||||||||||||
Sbjct: 149502 tcttctgtgagcttcacctt 149483
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>emb|CT025549.13| Mouse DNA sequence from clone RP24-235K10 on chromosome 13, complete
              sequence
          Length = 162143

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 274    cttctgtgagcttcacctttaagg 297
              |||||||||||||||| |||||||
Sbjct: 113971 cttctgtgagcttcacttttaagg 113994


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,237,568
Number of Sequences: 3902068
Number of extensions: 3237568
Number of successful extensions: 73419
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73355
Number of HSP's gapped (non-prelim): 61
length of query: 369
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 347
effective length of database: 17,147,199,772
effective search space: 5950078320884
effective search space used: 5950078320884
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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