ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags17e01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DQ019624.1| Triticum aestivum pre-mRNA processing factor (Luc... 254 3e-64
2ref|XM_470379.1| Oryza sativa (japonica cultivar-group), mRNA 232 1e-57
3dbj|AK101661.1| Oryza sativa (japonica cultivar-group) cDNA clon... 232 1e-57
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 212 1e-51
5gb|AC092852.6| Oryza sativa chromosome 3 BAC OSJNBa0032G11 genom... 212 1e-51
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 212 1e-51
7ref|XM_470378.1| Oryza sativa (japonica cultivar-group), mRNA 210 4e-51
8gb|AY224454.1| Oryza sativa (japonica cultivar-group) isolate 23... 210 4e-51
9gb|AY596591.1| Saccharum officinarum clone SCCCCL4011G05, comple... 157 5e-35
10gb|BT018575.1| Zea mays clone EL01N0443F08.d mRNA sequence 147 5e-32
11gb|BT018455.1| Zea mays clone EL01N0408H02.d mRNA sequence 131 3e-27
12gb|AY104000.1| Zea mays PCO071024 mRNA sequence 131 3e-27
13emb|AL365199.11| Human DNA sequence from clone RP11-124O11 on ch... 48 0.035
14ref|XM_631879.1| Dictyostelium discoideum hypothetical protein (... 44 0.54
15gb|AC164079.11| Mus musculus chromosome 1, clone RP23-15E12, com... 42 2.2
16gb|AC132901.11| Mus musculus chromosome 13, clone RP24-282A18, c... 42 2.2
17ref|XM_724439.1| Plasmodium yoelii yoelii str. 17XNL 19096-22891... 42 2.2
18gb|AC159040.2| Pan troglodytes BAC clone CH251-149A3 from chromo... 42 2.2
19gb|AC156807.2| Pan troglodytes BAC clone CH251-353P10 from chrom... 42 2.2
20gb|AC068194.6| Homo sapiens BAC clone RP11-113L22 from 2, comple... 42 2.2
21emb|AL162151.5|CNS01RHO Human chromosome 14 DNA sequence BAC C-3... 42 2.2
22gb|AC101869.13| Mus musculus chromosome 1, clone RP23-348D4, com... 42 2.2
23emb|AL359681.5|CNS05TEZ Human chromosome 14 DNA sequence BAC C-2... 42 2.2
24gb|AC167240.5| Mus musculus BAC clone RP24-548A13 from chromosom... 40 8.5
25gb|AC157554.7| Mus musculus chromosome 15, clone RP24-324P21, co... 40 8.5
26gb|AC112330.5| Rattus norvegicus 15 BAC CH230-185E8 (Children's ... 40 8.5
27gb|AC131694.4| Mus musculus BAC clone RP23-393L24 from chromosom... 40 8.5
28gb|AF371928.1| Uncultured bacterium clone p-2159-s959-3 16S ribo... 40 8.5
29gb|AC161217.7| Mus musculus chromosome 8, clone RP23-80D9, compl... 40 8.5
30gb|AC126270.4| Mus musculus BAC clone RP23-233A12 from chromosom... 40 8.5
31gb|AC107234.8| Mus musculus chromosome 10, clone RP23-195B22, co... 40 8.5
32emb|Z49131.1|CEZC373 Caenorhabditis elegans Cosmid ZC373, comple... 40 8.5
33gb|AC124586.3| Mus musculus BAC clone RP23-132E20 from 12, compl... 40 8.5
34gb|AC124765.2| Mus musculus BAC clone RP23-197D9 from 2, complet... 40 8.5
35gb|AC124170.3| Mus musculus BAC clone RP23-155H5 from 8, complet... 40 8.5
36emb|CR936850.1| Human DNA sequence from clone XX-HCC1954_35G04, ... 40 8.5
37gb|AC159617.2| Mus musculus BAC clone RP24-501A1 from chromosome... 40 8.5
38dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
39gb|AC037425.7|AC037425 Oryza sativa chromosome 10 BAC OSJNBa0055... 40 8.5
40gb|AC174480.1| Mus musculus BAC clone RP23-154N2 from chromosome... 40 8.5
41gb|AC126797.4| Mus musculus BAC clone RP23-443F6 from 1, complet... 40 8.5
42gb|AC005726.1|AC005726 Homo sapiens chromosome 17, clone hRPK.1... 40 8.5
43emb|AL844840.8| Mouse DNA sequence from clone RP23-337P9 on chro... 40 8.5
44gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 8.5
45gb|AC150275.2| Mus musculus BAC clone RP23-409M16 from 7, comple... 40 8.5
46emb|AL833795.7| Mouse DNA sequence from clone RP23-81B16 on chro... 40 8.5
47gb|AC161871.5| Mus musculus BAC clone RP24-84N15 from chromosome... 40 8.5 
>gb|DQ019624.1| Triticum aestivum pre-mRNA processing factor (Luc7) mRNA, complete
            cds
          Length = 1662

 Score =  254 bits (128), Expect = 3e-64
 Identities = 158/168 (94%)
 Strand = Plus / Minus

                                                                        
Query: 377  ggagcggtcatgccctctatcccggtcacggtcatggcgacggtccctgtcatggcgcct 436
            ||||||||||||  ||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 1290 ggagcggtcatgatctctatcacggtcgcggtcatggcgacggtccctgtcatggcgcct 1231

                                                                        
Query: 437  atcacgatccctatcatggtctcttctgctttcccgaggctcaactctgtcctttctttc 496
            ||||||||||||||| |||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct: 1230 atcacgatccctatcgtggtctcttctgctatcccggggctcaaccctgtcctttctttc 1171

                                                            
Query: 497  tgcatctctatccctggaagcccgcccattgtggtccctgctgttttc 544
            |||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 1170 tgcatctctatccctggatgcccgcccattgcggtccctgctgttttc 1123



 Score =  176 bits (89), Expect = 6e-41
 Identities = 170/193 (88%), Gaps = 8/193 (4%)
 Strand = Plus / Minus

                                                                        
Query: 18   tgtcgcatgtaagtttgacaagcgggcccagggaggcttgagtaacacaaaactcttaca 77
            |||| ||||| ||||| ||||  ||||||| ||||||||||||||||| |||||| ||||
Sbjct: 1655 tgtcacatgtgagtttaacaactgggcccaaggaggcttgagtaacacgaaactcataca 1596

                                                                        
Query: 78   tcgttggtaacatataaaacagtatattctggtaaacgacacatcaggtcagataacaga 137
            | |||||||||||||||||||||||||||| ||| ||  |||||||||||||||||||||
Sbjct: 1595 ttgttggtaacatataaaacagtatattcttgtacac--cacatcaggtcagataacaga 1538

                                                                        
Query: 138  aaaga-cgcat-aaacgcacagggttttaactaacaatccagcagcgaagacaa----ca 191
            |||||  |||| |||| ||||||||||| |||||||||||||||| ||||||||    ||
Sbjct: 1537 aaagatggcataaaacacacagggttttcactaacaatccagcagtgaagacaaacatca 1478

                         
Query: 192  agactatcttcct 204
            |||||||||||||
Sbjct: 1477 agactatcttcct 1465



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 64/69 (92%)
 Strand = Plus / Minus

                                                                        
Query: 292  tggagcaacagattcaatatctctcgtggcgcctgctgcgctccctggaccgagatcgtt 351
            |||||||||||||||||||||| || |||||||||||||| |||||||| ||||| ||||
Sbjct: 1387 tggagcaacagattcaatatctttcatggcgcctgctgcggtccctggatcgagagcgtt 1328

                     
Query: 352  cccttctcc 360
            |||||||||
Sbjct: 1327 cccttctcc 1319



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 49/53 (92%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                 
Query: 216  acctcaccatatatctttagaaagcaccatcactatcatgcaggaagacgaga 268
            ||||||||||| ||||| | | |||||||||||||||||||||||||||||||
Sbjct: 1445 acctcaccatacatcttaa-acagcaccatcactatcatgcaggaagacgaga 1394
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>ref|XM_470379.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2501

 Score =  232 bits (117), Expect = 1e-57
 Identities = 227/263 (86%), Gaps = 3/263 (1%)
 Strand = Plus / Minus

                                                                        
Query: 290  catggagcaacagattcaatatctctcgtggcgcctgctgcgctccctggaccgagatcg 349
            ||||||||| |||||||| ||||| |||||||||||||   |||||||||| ||||| ||
Sbjct: 2269 catggagcaccagattcagtatctatcgtggcgcctgc---gctccctggatcgagaacg 2213

                                                                        
Query: 350  ttcccttctccgtgagtcactgccacgggagcggtcatgccctctatcccggtcacggtc 409
            ||||||||||| ||| |||  |||||| || |||||||   |||||||||| || || ||
Sbjct: 2212 ttcccttctccttgaatcatggccacgcgaacggtcataatctctatcccgatcgcgatc 2153

                                                                        
Query: 410  atggcgacggtccctgtcatggcgcctatcacgatccctatcatggtctcttctgctttc 469
            |||||| |||||||| || ||||||||||| ||||| | |||||||||||||||||||||
Sbjct: 2152 atggcggcggtccctatcgtggcgcctatcccgatcacgatcatggtctcttctgctttc 2093

                                                                        
Query: 470  ccgaggctcaactctgtcctttctttctgcatctctatccctggaagcccgcccattgtg 529
             ||||| |||||||||||||||||||||| ||||||||||||||| ||| | |||||| |
Sbjct: 2092 tcgaggttcaactctgtcctttctttctgaatctctatccctggatgcctgaccattgcg 2033

                                   
Query: 530  gtccctgctgttttctctggatc 552
            |||| |||||| |||||| ||||
Sbjct: 2032 gtccttgctgtattctcttgatc 2010
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>dbj|AK101661.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033057K08, full
            insert sequence
          Length = 2502

 Score =  232 bits (117), Expect = 1e-57
 Identities = 227/263 (86%), Gaps = 3/263 (1%)
 Strand = Plus / Minus

                                                                        
Query: 290  catggagcaacagattcaatatctctcgtggcgcctgctgcgctccctggaccgagatcg 349
            ||||||||| |||||||| ||||| |||||||||||||   |||||||||| ||||| ||
Sbjct: 2270 catggagcaccagattcagtatctatcgtggcgcctgc---gctccctggatcgagaacg 2214

                                                                        
Query: 350  ttcccttctccgtgagtcactgccacgggagcggtcatgccctctatcccggtcacggtc 409
            ||||||||||| ||| |||  |||||| || |||||||   |||||||||| || || ||
Sbjct: 2213 ttcccttctccttgaatcatggccacgcgaacggtcataatctctatcccgatcgcgatc 2154

                                                                        
Query: 410  atggcgacggtccctgtcatggcgcctatcacgatccctatcatggtctcttctgctttc 469
            |||||| |||||||| || ||||||||||| ||||| | |||||||||||||||||||||
Sbjct: 2153 atggcggcggtccctatcgtggcgcctatcccgatcacgatcatggtctcttctgctttc 2094

                                                                        
Query: 470  ccgaggctcaactctgtcctttctttctgcatctctatccctggaagcccgcccattgtg 529
             ||||| |||||||||||||||||||||| ||||||||||||||| ||| | |||||| |
Sbjct: 2093 tcgaggttcaactctgtcctttctttctgaatctctatccctggatgcctgaccattgcg 2034

                                   
Query: 530  gtccctgctgttttctctggatc 552
            |||| |||||| |||||| ||||
Sbjct: 2033 gtccttgctgtattctcttgatc 2011
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  212 bits (107), Expect = 1e-51
 Identities = 197/227 (86%)
 Strand = Plus / Plus

                                                                            
Query: 327      ctgcgctccctggaccgagatcgttcccttctccgtgagtcactgccacgggagcggtca 386
                |||||||||||||| ||||| ||||||||||||| ||| |||  |||||| || ||||||
Sbjct: 35142994 ctgcgctccctggatcgagaacgttcccttctccttgaatcatggccacgcgaacggtca 35143053

                                                                            
Query: 387      tgccctctatcccggtcacggtcatggcgacggtccctgtcatggcgcctatcacgatcc 446
                |   |||||||||| || || |||||||| |||||||| || ||||||||||| ||||| 
Sbjct: 35143054 taatctctatcccgatcgcgatcatggcggcggtccctatcgtggcgcctatcccgatca 35143113

                                                                            
Query: 447      ctatcatggtctcttctgctttcccgaggctcaactctgtcctttctttctgcatctcta 506
                | ||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||
Sbjct: 35143114 cgatcatggtctcttctgctttctcgaggttcaactctgtcctttctttctgaatctcta 35143173

                                                               
Query: 507      tccctggaagcccgcccattgtggtccctgctgttttctctggatct 553
                |||||||| ||| | |||||| ||||| |||||| |||||| |||||
Sbjct: 35143174 tccctggatgcctgaccattgcggtccttgctgtattctcttgatct 35143220



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                     
Query: 290      catggagcaacagattcaatatctctcgtggcgcctg 326
                ||||||||| |||||||| ||||| ||||||||||||
Sbjct: 35142787 catggagcaccagattcagtatctatcgtggcgcctg 35142823
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>gb|AC092852.6| Oryza sativa chromosome 3 BAC OSJNBa0032G11 genomic sequence, complete
             sequence
          Length = 156606

 Score =  212 bits (107), Expect = 1e-51
 Identities = 197/227 (86%)
 Strand = Plus / Plus

                                                                         
Query: 327   ctgcgctccctggaccgagatcgttcccttctccgtgagtcactgccacgggagcggtca 386
             |||||||||||||| ||||| ||||||||||||| ||| |||  |||||| || ||||||
Sbjct: 21755 ctgcgctccctggatcgagaacgttcccttctccttgaatcatggccacgcgaacggtca 21814

                                                                         
Query: 387   tgccctctatcccggtcacggtcatggcgacggtccctgtcatggcgcctatcacgatcc 446
             |   |||||||||| || || |||||||| |||||||| || ||||||||||| ||||| 
Sbjct: 21815 taatctctatcccgatcgcgatcatggcggcggtccctatcgtggcgcctatcccgatca 21874

                                                                         
Query: 447   ctatcatggtctcttctgctttcccgaggctcaactctgtcctttctttctgcatctcta 506
             | ||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||
Sbjct: 21875 cgatcatggtctcttctgctttctcgaggttcaactctgtcctttctttctgaatctcta 21934

                                                            
Query: 507   tccctggaagcccgcccattgtggtccctgctgttttctctggatct 553
             |||||||| ||| | |||||| ||||| |||||| |||||| |||||
Sbjct: 21935 tccctggatgcctgaccattgcggtccttgctgtattctcttgatct 21981



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                  
Query: 290   catggagcaacagattcaatatctctcgtggcgcctg 326
             ||||||||| |||||||| ||||| ||||||||||||
Sbjct: 21548 catggagcaccagattcagtatctatcgtggcgcctg 21584
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  212 bits (107), Expect = 1e-51
 Identities = 197/227 (86%)
 Strand = Plus / Plus

                                                                            
Query: 327      ctgcgctccctggaccgagatcgttcccttctccgtgagtcactgccacgggagcggtca 386
                |||||||||||||| ||||| ||||||||||||| ||| |||  |||||| || ||||||
Sbjct: 35233066 ctgcgctccctggatcgagaacgttcccttctccttgaatcatggccacgcgaacggtca 35233125

                                                                            
Query: 387      tgccctctatcccggtcacggtcatggcgacggtccctgtcatggcgcctatcacgatcc 446
                |   |||||||||| || || |||||||| |||||||| || ||||||||||| ||||| 
Sbjct: 35233126 taatctctatcccgatcgcgatcatggcggcggtccctatcgtggcgcctatcccgatca 35233185

                                                                            
Query: 447      ctatcatggtctcttctgctttcccgaggctcaactctgtcctttctttctgcatctcta 506
                | ||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||
Sbjct: 35233186 cgatcatggtctcttctgctttctcgaggttcaactctgtcctttctttctgaatctcta 35233245

                                                               
Query: 507      tccctggaagcccgcccattgtggtccctgctgttttctctggatct 553
                |||||||| ||| | |||||| ||||| |||||| |||||| |||||
Sbjct: 35233246 tccctggatgcctgaccattgcggtccttgctgtattctcttgatct 35233292



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                     
Query: 290      catggagcaacagattcaatatctctcgtggcgcctg 326
                ||||||||| |||||||| ||||| ||||||||||||
Sbjct: 35232859 catggagcaccagattcagtatctatcgtggcgcctg 35232895
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>ref|XM_470378.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1221

 Score =  210 bits (106), Expect = 4e-51
 Identities = 210/244 (86%), Gaps = 3/244 (1%)
 Strand = Plus / Minus

                                                                        
Query: 309  tatctctcgtggcgcctgctgcgctccctggaccgagatcgttcccttctccgtgagtca 368
            ||||| |||||||||   |||||||||||||| ||||| ||||||||||||| ||| |||
Sbjct: 1217 tatctatcgtggcgc---ctgcgctccctggatcgagaacgttcccttctccttgaatca 1161

                                                                        
Query: 369  ctgccacgggagcggtcatgccctctatcccggtcacggtcatggcgacggtccctgtca 428
              |||||| || |||||||   |||||||||| || || |||||||| |||||||| || 
Sbjct: 1160 tggccacgcgaacggtcataatctctatcccgatcgcgatcatggcggcggtccctatcg 1101

                                                                        
Query: 429  tggcgcctatcacgatccctatcatggtctcttctgctttcccgaggctcaactctgtcc 488
            ||||||||||| ||||| | ||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 1100 tggcgcctatcccgatcacgatcatggtctcttctgctttctcgaggttcaactctgtcc 1041

                                                                        
Query: 489  tttctttctgcatctctatccctggaagcccgcccattgtggtccctgctgttttctctg 548
            |||||||||| ||||||||||||||| ||| | |||||| ||||| |||||| |||||| 
Sbjct: 1040 tttctttctgaatctctatccctggatgcctgaccattgcggtccttgctgtattctctt 981

                
Query: 549  gatc 552
            ||||
Sbjct: 980  gatc 977
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>gb|AY224454.1| Oryza sativa (japonica cultivar-group) isolate 23401 sarcoplasmic
            reticulum protein-like protein mRNA, complete cds
          Length = 1221

 Score =  210 bits (106), Expect = 4e-51
 Identities = 210/244 (86%), Gaps = 3/244 (1%)
 Strand = Plus / Minus

                                                                        
Query: 309  tatctctcgtggcgcctgctgcgctccctggaccgagatcgttcccttctccgtgagtca 368
            ||||| |||||||||   |||||||||||||| ||||| ||||||||||||| ||| |||
Sbjct: 1217 tatctatcgtggcgc---ctgcgctccctggatcgagaacgttcccttctccttgaatca 1161

                                                                        
Query: 369  ctgccacgggagcggtcatgccctctatcccggtcacggtcatggcgacggtccctgtca 428
              |||||| || |||||||   |||||||||| || || |||||||| |||||||| || 
Sbjct: 1160 tggccacgcgaacggtcataatctctatcccgatcgcgatcatggcggcggtccctatcg 1101

                                                                        
Query: 429  tggcgcctatcacgatccctatcatggtctcttctgctttcccgaggctcaactctgtcc 488
            ||||||||||| ||||| | ||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 1100 tggcgcctatcccgatcacgatcatggtctcttctgctttctcgaggttcaactctgtcc 1041

                                                                        
Query: 489  tttctttctgcatctctatccctggaagcccgcccattgtggtccctgctgttttctctg 548
            |||||||||| ||||||||||||||| ||| | |||||| ||||| |||||| |||||| 
Sbjct: 1040 tttctttctgaatctctatccctggatgcctgaccattgcggtccttgctgtattctctt 981

                
Query: 549  gatc 552
            ||||
Sbjct: 980  gatc 977
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>gb|AY596591.1| Saccharum officinarum clone SCCCCL4011G05, complete sequence
          Length = 1733

 Score =  157 bits (79), Expect = 5e-35
 Identities = 190/226 (84%), Gaps = 2/226 (0%)
 Strand = Plus / Plus

                                                                       
Query: 289 ccatggagcaacagattcaatatctctcgtggcgcctgctgcgctccctggaccgagatc 348
           |||||||||||||  || | |||||||| ||||||||||||||||||||||| || || |
Sbjct: 315 ccatggagcaaca--tttagtatctctcatggcgcctgctgcgctccctggagcgtgaac 372

                                                                       
Query: 349 gttcccttctccgtgagtcactgccacgggagcggtcatgccctctatcccggtcacggt 408
           | || ||||||| ||| |||   || |||||||||||||   | |||||||| |||||||
Sbjct: 373 gctctcttctccttgaatcatgtccgcgggagcggtcataatccctatcccgatcacggt 432

                                                                       
Query: 409 catggcgacggtccctgtcatggcgcctatcacgatccctatcatggtctcttctgcttt 468
           |||||||||||||||| || || || |||||||||||||||||||  |||||||| |  |
Sbjct: 433 catggcgacggtccctatcgtgacgtctatcacgatccctatcataatctcttctaccat 492

                                                         
Query: 469 cccgaggctcaactctgtcctttctttctgcatctctatccctgga 514
           | |||| ||||||||||||  | ||||||| |||||||||||||||
Sbjct: 493 ctcgagactcaactctgtctctcctttctgaatctctatccctgga 538
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>gb|BT018575.1| Zea mays clone EL01N0443F08.d mRNA sequence
          Length = 1660

 Score =  147 bits (74), Expect = 5e-32
 Identities = 173/206 (83%)
 Strand = Plus / Minus

                                                                        
Query: 309  tatctctcgtggcgcctgctgcgctccctggaccgagatcgttcccttctccgtgagtca 368
            |||||||| ||||||||||||||||||||||| || || || || ||||||| |||||||
Sbjct: 1326 tatctctcatggcgcctgctgcgctccctggagcgtgaacgctctcttctccttgagtca 1267

                                                                        
Query: 369  ctgccacgggagcggtcatgccctctatcccggtcacggtcatggcgacggtccctgtca 428
               || |||||||||||||   | ||||||||||| |||||||||||||||||||| || 
Sbjct: 1266 tatccgcgggagcggtcataatccctatcccggtcgcggtcatggcgacggtccctatcg 1207

                                                                        
Query: 429  tggcgcctatcacgatccctatcatggtctcttctgctttcccgaggctcaactctgtcc 488
            || |||||||| || ||||||||||  |||||||| |  || |||| |||||| ||||| 
Sbjct: 1206 tgacgcctatcgcgttccctatcataatctcttcttccatctcgagactcaaccctgtct 1147

                                      
Query: 489  tttctttctgcatctctatccctgga 514
             | ||||||| |||||||||||||||
Sbjct: 1146 ctcctttctgaatctctatccctgga 1121
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>gb|BT018455.1| Zea mays clone EL01N0408H02.d mRNA sequence
          Length = 1618

 Score =  131 bits (66), Expect = 3e-27
 Identities = 171/206 (83%)
 Strand = Plus / Minus

                                                                        
Query: 309  tatctctcgtggcgcctgctgcgctccctggaccgagatcgttcccttctccgtgagtca 368
            |||||||||||||||||||||||||||||||| || || || || || |||| ||| |||
Sbjct: 1331 tatctctcgtggcgcctgctgcgctccctggagcgtgaacgctctctcctccttgaatca 1272

                                                                        
Query: 369  ctgccacgggagcggtcatgccctctatcccggtcacggtcatggcgacggtccctgtca 428
               ||||||||||||||||   | |||||||| |||||||||||||| | |||||| |||
Sbjct: 1271 tgtccacgggagcggtcataatccctatcccgatcacggtcatggcgcctgtccctatca 1212

                                                                        
Query: 429  tggcgcctatcacgatccctatcatggtctcttctgctttcccgaggctcaactctgtcc 488
            || || |||||||||||||| ||||  |||||||| |  || |||| |||||| ||||| 
Sbjct: 1211 tgacgtctatcacgatccctttcataatctcttctaccatctcgagactcaaccctgtct 1152

                                      
Query: 489  tttctttctgcatctctatccctgga 514
             | |||||||  ||||||||||||||
Sbjct: 1151 ctcctttctggttctctatccctgga 1126
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>gb|AY104000.1| Zea mays PCO071024 mRNA sequence
          Length = 1252

 Score =  131 bits (66), Expect = 3e-27
 Identities = 171/206 (83%)
 Strand = Plus / Minus

                                                                       
Query: 309 tatctctcgtggcgcctgctgcgctccctggaccgagatcgttcccttctccgtgagtca 368
           |||||||||||||||||||||||||||||||| || || || || || |||| ||| |||
Sbjct: 864 tatctctcgtggcgcctgctgcgctccctggagcgtgaacgctctctcctccttgaatca 805

                                                                       
Query: 369 ctgccacgggagcggtcatgccctctatcccggtcacggtcatggcgacggtccctgtca 428
              ||||||||||||||||   | |||||||| |||||||||||||| | |||||| |||
Sbjct: 804 tgtccacgggagcggtcataatccctatcccgatcacggtcatggcgcctgtccctatca 745

                                                                       
Query: 429 tggcgcctatcacgatccctatcatggtctcttctgctttcccgaggctcaactctgtcc 488
           || || |||||||||||||| ||||  |||||||| |  || |||| |||||| ||||| 
Sbjct: 744 tgacgtctatcacgatccctttcataatctcttctaccatctcgagactcaaccctgtct 685

                                     
Query: 489 tttctttctgcatctctatccctgga 514
            | |||||||  ||||||||||||||
Sbjct: 684 ctcctttctggttctctatccctgga 659
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>emb|AL365199.11| Human DNA sequence from clone RP11-124O11 on chromosome 10 Contains two
              novel genes (FLJ36774) and five CpG islands, complete
              sequence
          Length = 158335

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 537    ctgttttctctggatctaggaaaa 560
              ||||||||||||||||||||||||
Sbjct: 150745 ctgttttctctggatctaggaaaa 150722
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>ref|XM_631879.1| Dictyostelium discoideum hypothetical protein (DDB0187704), partial
            mRNA
          Length = 4344

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 435  ctatcacgatccctatcatggtctct 460
            |||||||||||||||||| |||||||
Sbjct: 1598 ctatcacgatccctatcacggtctct 1573
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>gb|AC164079.11| Mus musculus chromosome 1, clone RP23-15E12, complete sequence
          Length = 215135

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 123   aggtcagataacagaaaagac 143
             |||||||||||||||||||||
Sbjct: 14925 aggtcagataacagaaaagac 14945
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>gb|AC132901.11| Mus musculus chromosome 13, clone RP24-282A18, complete sequence
          Length = 187090

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 234   agaaagcaccatcactatcat 254
             |||||||||||||||||||||
Sbjct: 36500 agaaagcaccatcactatcat 36520
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>ref|XM_724439.1| Plasmodium yoelii yoelii str. 17XNL 19096-22891 (PY01733) partial
           mRNA
          Length = 1641

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 435 ctatcacgatccctatcatggtctc 459
           |||||||||||||||||| ||||||
Sbjct: 404 ctatcacgatccctatcacggtctc 380
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>gb|AC159040.2| Pan troglodytes BAC clone CH251-149A3 from chromosome unknown, complete
             sequence
          Length = 174983

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 180   gcgaagacaacaagactatcttcct 204
             |||||||||||||||||| ||||||
Sbjct: 12974 gcgaagacaacaagactaacttcct 12950
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>gb|AC156807.2| Pan troglodytes BAC clone CH251-353P10 from chromosome unknown,
            complete sequence
          Length = 172466

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 180  gcgaagacaacaagactatcttcct 204
            |||||||||||||||||| ||||||
Sbjct: 8995 gcgaagacaacaagactaacttcct 9019
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>gb|AC068194.6| Homo sapiens BAC clone RP11-113L22 from 2, complete sequence
          Length = 166682

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 470    ccgaggctcaactctgtcctt 490
              |||||||||||||||||||||
Sbjct: 159191 ccgaggctcaactctgtcctt 159211
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>emb|AL162151.5|CNS01RHO Human chromosome 14 DNA sequence BAC C-3104H21 of library CalTech-D from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 231893

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 180    gcgaagacaacaagactatcttcct 204
              |||||||||||||||||| ||||||
Sbjct: 218127 gcgaagacaacaagactaacttcct 218151
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>gb|AC101869.13| Mus musculus chromosome 1, clone RP23-348D4, complete sequence
          Length = 206095

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 123  aggtcagataacagaaaagac 143
            |||||||||||||||||||||
Sbjct: 2721 aggtcagataacagaaaagac 2701
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>emb|AL359681.5|CNS05TEZ Human chromosome 14 DNA sequence BAC C-2348N10 of library CalTech-D
             from chromosome 14 of Homo sapiens (Human), complete
             sequence
          Length = 104782

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 180   gcgaagacaacaagactatcttcct 204
             |||||||||||||||||| ||||||
Sbjct: 20350 gcgaagacaacaagactaacttcct 20374
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>gb|AC167240.5| Mus musculus BAC clone RP24-548A13 from chromosome 7, complete sequence
          Length = 218177

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 476    ctcaactctgtcctttcttt 495
              ||||||||||||||||||||
Sbjct: 106426 ctcaactctgtcctttcttt 106407
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>gb|AC157554.7| Mus musculus chromosome 15, clone RP24-324P21, complete sequence
          Length = 217353

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 460    ttctgctttcccgaggctca 479
              ||||||||||||||||||||
Sbjct: 168048 ttctgctttcccgaggctca 168067
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>gb|AC112330.5| Rattus norvegicus 15 BAC CH230-185E8 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 158526

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 450   tcatggtctcttctgctttc 469
             ||||||||||||||||||||
Sbjct: 76075 tcatggtctcttctgctttc 76094
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>gb|AC131694.4| Mus musculus BAC clone RP23-393L24 from chromosome 6, complete sequence
          Length = 187925

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 477    tcaactctgtcctttctttc 496
              ||||||||||||||||||||
Sbjct: 146803 tcaactctgtcctttctttc 146784
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>gb|AF371928.1| Uncultured bacterium clone p-2159-s959-3 16S ribosomal RNA gene,
           partial sequence
          Length = 1476

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 487 cctttctttctgcatctcta 506
           ||||||||||||||||||||
Sbjct: 204 cctttctttctgcatctcta 185
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>gb|AC161217.7| Mus musculus chromosome 8, clone RP23-80D9, complete sequence
          Length = 234127

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 153   cacagggttttaactaacaa 172
             ||||||||||||||||||||
Sbjct: 76291 cacagggttttaactaacaa 76310
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>gb|AC126270.4| Mus musculus BAC clone RP23-233A12 from chromosome 10, complete sequence
          Length = 208709

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 127    cagataacagaaaagacgcataaa 150
              ||||||||||||||||| ||||||
Sbjct: 146075 cagataacagaaaagacacataaa 146098
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>gb|AC107234.8| Mus musculus chromosome 10, clone RP23-195B22, complete sequence
          Length = 218031

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 83     ggtaacatataaaacagtatattc 106
              |||||||||||||||| |||||||
Sbjct: 127582 ggtaacatataaaacaatatattc 127559
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>emb|Z49131.1|CEZC373 Caenorhabditis elegans Cosmid ZC373, complete sequence
          Length = 27030

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 562  caaatatgggctttcagatt 581
            ||||||||||||||||||||
Sbjct: 5784 caaatatgggctttcagatt 5765
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>gb|AC124586.3| Mus musculus BAC clone RP23-132E20 from 12, complete sequence
          Length = 188243

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    ataaaacagtatattctggt 110
             ||||||||||||||||||||
Sbjct: 55507 ataaaacagtatattctggt 55488
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>gb|AC124765.2| Mus musculus BAC clone RP23-197D9 from 2, complete sequence
          Length = 191781

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 486   tcctttctttctgcatctct 505
             ||||||||||||||||||||
Sbjct: 97197 tcctttctttctgcatctct 97178
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>gb|AC124170.3| Mus musculus BAC clone RP23-155H5 from 8, complete sequence
          Length = 235023

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 153   cacagggttttaactaacaa 172
             ||||||||||||||||||||
Sbjct: 91565 cacagggttttaactaacaa 91546
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>emb|CR936850.1| Human DNA sequence from clone XX-HCC1954_35G04, complete sequence
          Length = 118376

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 570 ggctttcagattgtgctaca 589
           ||||||||||||||||||||
Sbjct: 584 ggctttcagattgtgctaca 603
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>gb|AC159617.2| Mus musculus BAC clone RP24-501A1 from chromosome 12, complete sequence
          Length = 165665

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 580    ttgtgctacaacaaaacaaa 599
              ||||||||||||||||||||
Sbjct: 121541 ttgtgctacaacaaaacaaa 121522
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 567      atgggctttcagattgtgct 586
                ||||||||||||||||||||
Sbjct: 17395944 atgggctttcagattgtgct 17395963
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>gb|AC037425.7|AC037425 Oryza sativa chromosome 10 BAC OSJNBa0055P24 genomic sequence, complete
             sequence
          Length = 134058

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 567   atgggctttcagattgtgct 586
             ||||||||||||||||||||
Sbjct: 24939 atgggctttcagattgtgct 24958
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>gb|AC174480.1| Mus musculus BAC clone RP23-154N2 from chromosome 1, complete sequence
          Length = 207205

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 488   ctttctttctgcatctctat 507
             ||||||||||||||||||||
Sbjct: 67487 ctttctttctgcatctctat 67506
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>gb|AC126797.4| Mus musculus BAC clone RP23-443F6 from 1, complete sequence
          Length = 192663

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 488    ctttctttctgcatctctat 507
              ||||||||||||||||||||
Sbjct: 187255 ctttctttctgcatctctat 187274
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>gb|AC005726.1|AC005726 Homo sapiens chromosome 17, clone  hRPK.192_H_23, complete sequence
          Length = 185215

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 570    ggctttcagattgtgctaca 589
              ||||||||||||||||||||
Sbjct: 120906 ggctttcagattgtgctaca 120887
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>emb|AL844840.8| Mouse DNA sequence from clone RP23-337P9 on chromosome 2, complete
              sequence
          Length = 219568

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 486    tcctttctttctgcatctct 505
              ||||||||||||||||||||
Sbjct: 205813 tcctttctttctgcatctct 205832
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 567      atgggctttcagattgtgct 586
                ||||||||||||||||||||
Sbjct: 17404984 atgggctttcagattgtgct 17405003
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>gb|AC150275.2| Mus musculus BAC clone RP23-409M16 from 7, complete sequence
          Length = 224935

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 476   ctcaactctgtcctttcttt 495
             ||||||||||||||||||||
Sbjct: 56606 ctcaactctgtcctttcttt 56625
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>emb|AL833795.7| Mouse DNA sequence from clone RP23-81B16 on chromosome X, complete
             sequence
          Length = 72909

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 240   caccatcactatcatgcagg 259
             ||||||||||||||||||||
Sbjct: 41397 caccatcactatcatgcagg 41378
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>gb|AC161871.5| Mus musculus BAC clone RP24-84N15 from chromosome 14, complete sequence
          Length = 204723

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 581    tgtgctacaacaaaacaaag 600
              ||||||||||||||||||||
Sbjct: 143266 tgtgctacaacaaaacaaag 143247


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,275,357
Number of Sequences: 3902068
Number of extensions: 6275357
Number of successful extensions: 103191
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103032
Number of HSP's gapped (non-prelim): 152
length of query: 624
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 601
effective length of database: 17,143,297,704
effective search space: 10303121920104
effective search space used: 10303121920104
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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