ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags17d24 |
|---|---|
| Clone Library Name | barley_pub |
>ST7R_ARATH (Q9LDU6) 7-dehydrocholesterol reductase (EC 1.3.1.21) (7-DHC| reductase) (Sterol delta-7-reductase) (Dwarf5 protein) Length = 432 Score = 87.0 bits (214), Expect = 3e-17 Identities = 36/60 (60%), Positives = 44/60 (73%) Frame = -2 Query: 579 FFWTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMYCNRVPYRVVPGIY 400 FFWTVPALF +F+ YFYVIFLT+ RC +KYGKYWK+YC +V YR++PGIY Sbjct: 373 FFWTVPALFDNFLAYFYVIFLTLLLFDRAKRDDDRCRSKYGKYWKLYCEKVKYRIIPGIY 432
>DHCR7_MIMIV (Q5UQI4) Probable 7-dehydrocholesterol reductase (EC 1.3.1.21)| (7-DHC reductase) (Sterol delta-7-reductase) Length = 447 Score = 72.4 bits (176), Expect = 9e-13 Identities = 30/52 (57%), Positives = 36/52 (69%) Frame = -2 Query: 555 FTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMYCNRVPYRVVPGIY 400 F+HF+PYFY +++TI RCS KYGKYWKMY RVPYR +PGIY Sbjct: 396 FSHFIPYFYCVYMTILLVTRCLRDEQRCSRKYGKYWKMYTKRVPYRFIPGIY 447
>LBR_HUMAN (Q14739) Lamin-B receptor (Integral nuclear envelope inner membrane| protein) (LMN2R) Length = 615 Score = 65.5 bits (158), Expect = 1e-10 Identities = 25/58 (43%), Positives = 33/58 (56%) Frame = -2 Query: 573 WTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMYCNRVPYRVVPGIY 400 W++P F H +PYFY+I+ T+ C KYG W+ YC RVPYR+ P IY Sbjct: 558 WSLPCGFNHILPYFYIIYFTMLLVHREARDEYHCKKKYGVAWEKYCQRVPYRIFPYIY 615
>LBR_RAT (O08984) Lamin-B receptor (Integral nuclear envelope inner membrane| protein) (NBP60) Length = 620 Score = 64.7 bits (156), Expect = 2e-10 Identities = 26/58 (44%), Positives = 33/58 (56%) Frame = -2 Query: 573 WTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMYCNRVPYRVVPGIY 400 W++P F H +PYFYVI+ T +C KYG W+ YC RVPYR+ P IY Sbjct: 563 WSLPCGFNHILPYFYVIYFTALLIHREARDEHQCRRKYGLAWEKYCQRVPYRIFPYIY 620
>LBR_MOUSE (Q3U9G9) Lamin-B receptor (Integral nuclear envelope inner membrane| protein) Length = 626 Score = 64.3 bits (155), Expect = 2e-10 Identities = 25/58 (43%), Positives = 33/58 (56%) Frame = -2 Query: 573 WTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMYCNRVPYRVVPGIY 400 W++P F H +PYFY+I+ T +C KYG W+ YC RVPYR+ P IY Sbjct: 569 WSLPCGFNHLLPYFYIIYFTALLIHREARDEHQCRRKYGLAWEKYCQRVPYRIFPYIY 626
>LBR_PONPY (Q5R7H4) Lamin-B receptor (Integral nuclear envelope inner membrane| protein) Length = 615 Score = 62.4 bits (150), Expect = 9e-10 Identities = 24/58 (41%), Positives = 32/58 (55%) Frame = -2 Query: 573 WTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMYCNRVPYRVVPGIY 400 W++ F H +PYFY+I+ T+ C KYG W+ YC RVPYR+ P IY Sbjct: 558 WSLACGFNHILPYFYIIYFTMLLVHREARDEYHCKKKYGVAWEKYCQRVPYRIFPYIY 615
>DHCR7_XENLA (Q7ZXH1) 7-dehydrocholesterol reductase (EC 1.3.1.21) (7-DHC| reductase) (Sterol delta-7-reductase) Length = 473 Score = 61.2 bits (147), Expect = 2e-09 Identities = 25/52 (48%), Positives = 35/52 (67%) Frame = -2 Query: 555 FTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMYCNRVPYRVVPGIY 400 F H +PYFY I++TI RCS+KYGK WK+Y + VPYR++PG++ Sbjct: 422 FDHLLPYFYFIYMTILLVHRCIRDEHRCSSKYGKDWKLYTSAVPYRLLPGLF 473
>ERG24_HUMAN (O76062) Delta(14)-sterol reductase (EC 1.3.1.70) (C-14 sterol| reductase) (Sterol C14-reductase) (Delta14-SR) (Transmembrane 7 superfamily member 2) (Another new gene 1 protein) (Putative sterol reductase SR-1) Length = 418 Score = 60.5 bits (145), Expect = 3e-09 Identities = 23/58 (39%), Positives = 34/58 (58%) Frame = -2 Query: 573 WTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMYCNRVPYRVVPGIY 400 W++P +H +PYFY+++ T +C KYG W+ YC RVPYR++P IY Sbjct: 361 WSLPCGVSHLLPYFYLLYFTALLVHREARDERQCLQKYGLAWQEYCRRVPYRIMPYIY 418
>DHCR7_XENTR (Q6P4M0) 7-dehydrocholesterol reductase (EC 1.3.1.21) (7-DHC| reductase) (Sterol delta-7-reductase) Length = 473 Score = 59.3 bits (142), Expect = 8e-09 Identities = 24/52 (46%), Positives = 34/52 (65%) Frame = -2 Query: 555 FTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMYCNRVPYRVVPGIY 400 F H +PYFY ++TI RCS+KYGK WK+Y + VPYR++PG++ Sbjct: 422 FDHLLPYFYFTYMTILLVHRCIRDEHRCSSKYGKDWKLYTDAVPYRLLPGLF 473
>DHCR7_RAT (Q9Z2Z8) 7-dehydrocholesterol reductase (EC 1.3.1.21) (7-DHC| reductase) (Sterol delta-7-reductase) Length = 471 Score = 55.5 bits (132), Expect = 1e-07 Identities = 22/50 (44%), Positives = 32/50 (64%) Frame = -2 Query: 549 HFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMYCNRVPYRVVPGIY 400 H +PYFY+I++TI RC+ KYG+ W+ Y VPYR++PGI+ Sbjct: 422 HLLPYFYIIYMTILLTHRCLRDEHRCANKYGRDWERYVAAVPYRLLPGIF 471
>DHCR7_MOUSE (O88455) 7-dehydrocholesterol reductase (EC 1.3.1.21) (7-DHC| reductase) (Sterol delta-7-reductase) Length = 471 Score = 55.5 bits (132), Expect = 1e-07 Identities = 22/50 (44%), Positives = 32/50 (64%) Frame = -2 Query: 549 HFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMYCNRVPYRVVPGIY 400 H +PYFY+I++TI RC+ KYG+ W+ Y VPYR++PGI+ Sbjct: 422 HLLPYFYIIYMTILLTHRCLRDEHRCANKYGRDWERYTAAVPYRLLPGIF 471
>LBR_CHICK (P23913) Lamin-B receptor| Length = 637 Score = 54.3 bits (129), Expect = 2e-07 Identities = 21/51 (41%), Positives = 26/51 (50%) Frame = -2 Query: 573 WTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMYCNRVPY 421 W++P F H +PYFYVI+ C KYG W+ YC RVPY Sbjct: 551 WSLPCGFNHILPYFYVIYFICLLVHREARDEHHCKKKYGLAWERYCQRVPY 601
>DHCR7_BOVIN (Q5E9J5) 7-dehydrocholesterol reductase (EC 1.3.1.21) (7-DHC| reductase) (Sterol delta-7-reductase) Length = 475 Score = 54.3 bits (129), Expect = 2e-07 Identities = 22/50 (44%), Positives = 31/50 (62%) Frame = -2 Query: 549 HFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMYCNRVPYRVVPGIY 400 H +PYFY+IF+ I RC+ KYG+ W+ Y VPYR++PGI+ Sbjct: 426 HLLPYFYIIFMAILLTHRCLRDEHRCANKYGRDWEHYTAAVPYRLLPGIF 475
>DHCR7_HUMAN (Q9UBM7) 7-dehydrocholesterol reductase (EC 1.3.1.21) (7-DHC| reductase) (Sterol delta-7-reductase) (Putative sterol reductase SR-2) Length = 475 Score = 53.9 bits (128), Expect = 3e-07 Identities = 21/50 (42%), Positives = 32/50 (64%) Frame = -2 Query: 549 HFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMYCNRVPYRVVPGIY 400 H +PYFY+I++ I RC++KYG+ W+ Y VPYR++PGI+ Sbjct: 426 HLLPYFYIIYMAILLTHRCLRDEHRCASKYGRDWERYTAAVPYRLLPGIF 475
>ERG24_SCHPO (Q09195) Delta(14)-sterol reductase (EC 1.3.1.70) (C-14 sterol| reductase) (Sterol C14-reductase) Length = 424 Score = 53.1 bits (126), Expect = 6e-07 Identities = 21/58 (36%), Positives = 31/58 (53%) Frame = -2 Query: 573 WTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMYCNRVPYRVVPGIY 400 W +PA F +PYFYV + + +C KYG+ W+ YC V YR++P +Y Sbjct: 367 WCLPAGFGSPIPYFYVAYFGVLLVHRNARDDHKCRVKYGEDWEKYCKAVKYRIIPYVY 424
>DHCR7_BRARE (Q7SXF1) 7-dehydrocholesterol reductase (EC 1.3.1.21) (7-DHC| reductase) (Sterol delta-7-reductase) Length = 478 Score = 52.0 bits (123), Expect = 1e-06 Identities = 22/50 (44%), Positives = 30/50 (60%) Frame = -2 Query: 549 HFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMYCNRVPYRVVPGIY 400 H +PYFY+I++TI RCS KYGK W+ Y V YR++P I+ Sbjct: 429 HLLPYFYIIYMTILLVHRCIRDEHRCSNKYGKDWERYTAAVSYRLLPNIF 478
>ERG24_ASCIM (P78575) Delta(14)-sterol reductase (EC 1.3.1.70) (C-14 sterol| reductase) (Sterol C14-reductase) Length = 430 Score = 47.8 bits (112), Expect = 2e-05 Identities = 20/48 (41%), Positives = 26/48 (54%) Frame = -2 Query: 543 MPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMYCNRVPYRVVPGIY 400 + YFYVI+ I +C KYGK W YC V +R++PGIY Sbjct: 383 LTYFYVIYFGILLLHRDRRDEAKCREKYGKDWDRYCKVVKWRIIPGIY 430
>ERG24_SEPLY (O13597) Delta(14)-sterol reductase (EC 1.3.1.70) (C-14 sterol| reductase) (Sterol C14-reductase) Length = 512 Score = 45.1 bits (105), Expect = 1e-04 Identities = 16/46 (34%), Positives = 26/46 (56%) Frame = -2 Query: 537 YFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMYCNRVPYRVVPGIY 400 YFY+++ I +C KYG +W+ YC V +R++PG+Y Sbjct: 467 YFYMLYFAILLIHRERRDEAKCRRKYGAHWEKYCQIVRWRILPGVY 512
>ERG4_YEAST (P25340) Delta(24(24(1)))-sterol reductase (EC 1.3.1.71) (Sterol| delta(24(28))-reductase) (C-24(28) sterol reductase) Length = 473 Score = 43.9 bits (102), Expect = 3e-04 Identities = 16/58 (27%), Positives = 25/58 (43%) Frame = -2 Query: 573 WTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMYCNRVPYRVVPGIY 400 W + F P+F+ +F + +C KYGK W YC PY +P ++ Sbjct: 416 WALSCGFNSVFPWFFPVFFLVVLIHRAFRDQAKCKRKYGKDWDEYCKHCPYVFIPYVF 473
>ERG24_NEUCR (P38670) Delta(14)-sterol reductase (EC 1.3.1.70) (C-14 sterol| reductase) (Sterol C14-reductase) Length = 490 Score = 43.1 bits (100), Expect = 6e-04 Identities = 18/46 (39%), Positives = 25/46 (54%) Frame = -2 Query: 537 YFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMYCNRVPYRVVPGIY 400 YFY+++ I +CS KYG W+ Y V +R+VPGIY Sbjct: 445 YFYILYFAILLIHRDLRDDEKCSKKYGDDWEKYKKLVKWRIVPGIY 490
>ERG24_FUSSO (Q01447) Delta(14)-sterol reductase (EC 1.3.1.70) (C-14 sterol| reductase) (Sterol C14-reductase) Length = 485 Score = 42.7 bits (99), Expect = 7e-04 Identities = 17/46 (36%), Positives = 25/46 (54%) Frame = -2 Query: 537 YFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMYCNRVPYRVVPGIY 400 YFY+++ I +C KYG+ W+ Y V YR++PGIY Sbjct: 440 YFYILYFAILLIHRERRDDDKCHRKYGEDWEKYRKIVRYRIIPGIY 485
>ERG24_ARATH (Q9LDR4) Delta(14)-sterol reductase (EC 1.3.1.70) (C-14 sterol| reductase) (Sterol C14-reductase) (FACKEL protein) Length = 369 Score = 41.6 bits (96), Expect = 0.002 Identities = 19/58 (32%), Positives = 31/58 (53%) Frame = -2 Query: 573 WTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMYCNRVPYRVVPGIY 400 +++P + +PYFY I+L I RC+ KY + W Y VP+R++P +Y Sbjct: 312 FSLPCGISSPVPYFYPIYLLILLIWRERRDEVRCAEKYKEIWAEYLRLVPWRILPYVY 369
>ERG24_YEAST (P32462) Delta(14)-sterol reductase (EC 1.3.1.70) (C-14 sterol| reductase) (Sterol C14-reductase) Length = 438 Score = 40.8 bits (94), Expect = 0.003 Identities = 15/58 (25%), Positives = 28/58 (48%) Frame = -2 Query: 573 WTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMYCNRVPYRVVPGIY 400 W + F + Y+Y ++ +C KYG+ W+ Y +VPY+++P +Y Sbjct: 381 WCLATWFQTPLTYYYSLYFATLLLHRQQRDEHKCRLKYGENWEEYERKVPYKIIPYVY 438
>STS1_SCHPO (P36209) Delta(24(24(1)))-sterol reductase (EC 1.3.1.71) (Sterol| delta(24(28))-reductase) (C-24(28) sterol reductase) Length = 453 Score = 37.4 bits (85), Expect = 0.031 Identities = 17/58 (29%), Positives = 24/58 (41%) Frame = -2 Query: 573 WTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMYCNRVPYRVVPGIY 400 W + F +PYFY F + +C KYG + YC PY +P I+ Sbjct: 396 WALITGFQSPLPYFYPCFFFVVLVHRVSRDIKKCKAKYGADFDEYCRICPYLFIPYIF 453
>CML1_RAT (O35786) Chemokine receptor-like 1 (G-protein coupled receptor DEZ)| (G-protein coupled chemoattractant-like receptor) Length = 371 Score = 29.3 bits (64), Expect = 8.5 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 4/63 (6%) Frame = +1 Query: 316 IVPGH*SGRESHQQLTCFLLVSCRV----HHSVNTRNNPVRYSVAVHLPVLAVLC*ASII 483 +V GH S SH ++TCF S HS + R +PV YS V + V LC + Sbjct: 173 LVFGHVS--TSHGKITCFNNFSLAAPEPFSHSTHPRTDPVGYSRHVAVTVTRFLC--GFL 228 Query: 484 IPL 492 IP+ Sbjct: 229 IPV 231 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,214,914 Number of Sequences: 219361 Number of extensions: 1135873 Number of successful extensions: 2651 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 2613 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2651 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4929664480 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
