ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags17d21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1R13AD_ARATH (Q9FKC0) 60S ribosomal protein L13a-4 63 5e-10
2RL13A_LUPLU (O49885) 60S ribosomal protein L13a 62 8e-10
3R13AC_ARATH (Q9SVR0) 60S ribosomal protein L13a-3 61 2e-09
4R13AA_ARATH (Q9SFU1) 60S ribosomal protein L13a-1 61 2e-09
5R13AB_ARATH (Q9LRX8) 60S ribosomal protein L13a-2 58 2e-08
6RL13A_PICMA (O65055) 60S ribosomal protein L13a 50 6e-06
7RL13A_BOVIN (Q3SZ90) 60S ribosomal protein L13a 32 1.2
8RL13A_PONPY (Q5RA38) 60S ribosomal protein L13a 31 2.7
9RL13A_HUMAN (P40429) 60S ribosomal protein L13a (23 kDa highly b... 30 3.6
10RL13A_MACFA (Q4R8Z2) 60S ribosomal protein L13a 29 7.9
11T2R60_PONPY (Q645U7) Taste receptor type 2 member 60 (T2R60) (T2... 29 7.9

>R13AD_ARATH (Q9FKC0) 60S ribosomal protein L13a-4|
          Length = 206

 Score = 63.2 bits (152), Expect = 5e-10
 Identities = 32/54 (59%), Positives = 37/54 (68%)
 Frame = -1

Query: 560 NYADTIXXXXXXXXXXXKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEILAPIKY 399
           N+ DTI            V Y+R+KQL KLRVKAEK AEEKLG QL+ILAP+KY
Sbjct: 153 NHYDTIKELETKRKERAHVVYERKKQLNKLRVKAEKVAEEKLGAQLDILAPVKY 206



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>RL13A_LUPLU (O49885) 60S ribosomal protein L13a|
          Length = 205

 Score = 62.4 bits (150), Expect = 8e-10
 Identities = 31/54 (57%), Positives = 39/54 (72%)
 Frame = -1

Query: 560 NYADTIXXXXXXXXXXXKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEILAPIKY 399
           NY DTI           +V Y+R+KQL KLRVKAE+ A+EKLG+QL+ILAP+KY
Sbjct: 152 NYYDTIKELEKKRKERSQVVYERKKQLNKLRVKAEQVAQEKLGSQLDILAPVKY 205



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>R13AC_ARATH (Q9SVR0) 60S ribosomal protein L13a-3|
          Length = 206

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 29/54 (53%), Positives = 38/54 (70%)
 Frame = -1

Query: 560 NYADTIXXXXXXXXXXXKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEILAPIKY 399
           N+ DTI           +V Y+R+KQL KLR KAEK AEE+LG+QL++LAP+KY
Sbjct: 153 NHYDTIKELETKRKERSQVMYERKKQLNKLRTKAEKVAEERLGSQLDVLAPVKY 206



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>R13AA_ARATH (Q9SFU1) 60S ribosomal protein L13a-1|
          Length = 206

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 29/54 (53%), Positives = 38/54 (70%)
 Frame = -1

Query: 560 NYADTIXXXXXXXXXXXKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEILAPIKY 399
           N+ DTI           +  Y+R+KQL+KLR KAEK AEEKLG+QL++LAP+KY
Sbjct: 153 NHYDTIKELENKRKERAQAVYERKKQLSKLRAKAEKVAEEKLGSQLDVLAPVKY 206



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>R13AB_ARATH (Q9LRX8) 60S ribosomal protein L13a-2|
          Length = 206

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 29/54 (53%), Positives = 36/54 (66%)
 Frame = -1

Query: 560 NYADTIXXXXXXXXXXXKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEILAPIKY 399
           N+ DTI           +  Y+R+KQL KLR KAEK AEEKLG+QL++LA IKY
Sbjct: 153 NHYDTIKELEVKRKERSQALYERKKQLTKLRAKAEKVAEEKLGSQLDVLASIKY 206



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>RL13A_PICMA (O65055) 60S ribosomal protein L13a|
          Length = 206

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 25/54 (46%), Positives = 36/54 (66%)
 Frame = -1

Query: 560 NYADTIXXXXXXXXXXXKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEILAPIKY 399
           ++ DTI           +VSY+RRKQLAKLR KA + AE++L  ++E+LA +KY
Sbjct: 153 HHFDTITELEEKRKAKAQVSYERRKQLAKLRSKAVELAEKQLAPEMELLASLKY 206



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>RL13A_BOVIN (Q3SZ90) 60S ribosomal protein L13a|
          Length = 202

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = -1

Query: 506 VSYDRRKQLAKLRVKAEKAAEEKLGTQLEIL 414
           + Y ++KQL +LR +AEK  E+K+G   E+L
Sbjct: 165 IHYRKKKQLMRLRKQAEKNIEKKIGKFTEVL 195



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>RL13A_PONPY (Q5RA38) 60S ribosomal protein L13a|
          Length = 202

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = -1

Query: 506 VSYDRRKQLAKLRVKAEKAAEEKLGTQLEIL 414
           + Y ++KQL +LR +AEK  E+K+    E+L
Sbjct: 165 IHYRKKKQLVRLRKQAEKNVEKKIDKYTEVL 195



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>RL13A_HUMAN (P40429) 60S ribosomal protein L13a (23 kDa highly basic protein)|
          Length = 202

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = -1

Query: 506 VSYDRRKQLAKLRVKAEKAAEEKLGTQLEIL 414
           + Y ++KQL +LR +AEK  E+K+    E+L
Sbjct: 165 IHYRKKKQLMRLRKQAEKNVEKKIDKYTEVL 195



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>RL13A_MACFA (Q4R8Z2) 60S ribosomal protein L13a|
          Length = 202

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -1

Query: 506 VSYDRRKQLAKLRVKAEKAAEEKLGTQLEIL 414
           + Y ++KQL +LR +AEK  E+K+    ++L
Sbjct: 165 IHYRKKKQLMRLRKQAEKNVEKKIDKYTQVL 195



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>T2R60_PONPY (Q645U7) Taste receptor type 2 member 60 (T2R60) (T2R56)|
          Length = 318

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 19/60 (31%), Positives = 26/60 (43%)
 Frame = -3

Query: 258 LKFSTWSTVSFIKCVHLKILVNVYQVIIWCCSRFSSLQPWQPLVMACCGCFSDFLSYIKN 79
           L FSTW +V +  CV  KI    + V +W   + S   PW          F+  L +I N
Sbjct: 108 LWFSTWLSVFY--CV--KIATFTHPVFLWLKHKLSEWVPWMLFSSVGLSSFTTILFFIGN 163


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,407,674
Number of Sequences: 219361
Number of extensions: 1178852
Number of successful extensions: 2956
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2954
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4585734400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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