| Clone Name | rbags17d21 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | R13AD_ARATH (Q9FKC0) 60S ribosomal protein L13a-4 | 63 | 5e-10 | 2 | RL13A_LUPLU (O49885) 60S ribosomal protein L13a | 62 | 8e-10 | 3 | R13AC_ARATH (Q9SVR0) 60S ribosomal protein L13a-3 | 61 | 2e-09 | 4 | R13AA_ARATH (Q9SFU1) 60S ribosomal protein L13a-1 | 61 | 2e-09 | 5 | R13AB_ARATH (Q9LRX8) 60S ribosomal protein L13a-2 | 58 | 2e-08 | 6 | RL13A_PICMA (O65055) 60S ribosomal protein L13a | 50 | 6e-06 | 7 | RL13A_BOVIN (Q3SZ90) 60S ribosomal protein L13a | 32 | 1.2 | 8 | RL13A_PONPY (Q5RA38) 60S ribosomal protein L13a | 31 | 2.7 | 9 | RL13A_HUMAN (P40429) 60S ribosomal protein L13a (23 kDa highly b... | 30 | 3.6 | 10 | RL13A_MACFA (Q4R8Z2) 60S ribosomal protein L13a | 29 | 7.9 | 11 | T2R60_PONPY (Q645U7) Taste receptor type 2 member 60 (T2R60) (T2... | 29 | 7.9 |
|---|
>R13AD_ARATH (Q9FKC0) 60S ribosomal protein L13a-4| Length = 206 Score = 63.2 bits (152), Expect = 5e-10 Identities = 32/54 (59%), Positives = 37/54 (68%) Frame = -1 Query: 560 NYADTIXXXXXXXXXXXKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEILAPIKY 399 N+ DTI V Y+R+KQL KLRVKAEK AEEKLG QL+ILAP+KY Sbjct: 153 NHYDTIKELETKRKERAHVVYERKKQLNKLRVKAEKVAEEKLGAQLDILAPVKY 206
>RL13A_LUPLU (O49885) 60S ribosomal protein L13a| Length = 205 Score = 62.4 bits (150), Expect = 8e-10 Identities = 31/54 (57%), Positives = 39/54 (72%) Frame = -1 Query: 560 NYADTIXXXXXXXXXXXKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEILAPIKY 399 NY DTI +V Y+R+KQL KLRVKAE+ A+EKLG+QL+ILAP+KY Sbjct: 152 NYYDTIKELEKKRKERSQVVYERKKQLNKLRVKAEQVAQEKLGSQLDILAPVKY 205
>R13AC_ARATH (Q9SVR0) 60S ribosomal protein L13a-3| Length = 206 Score = 60.8 bits (146), Expect = 2e-09 Identities = 29/54 (53%), Positives = 38/54 (70%) Frame = -1 Query: 560 NYADTIXXXXXXXXXXXKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEILAPIKY 399 N+ DTI +V Y+R+KQL KLR KAEK AEE+LG+QL++LAP+KY Sbjct: 153 NHYDTIKELETKRKERSQVMYERKKQLNKLRTKAEKVAEERLGSQLDVLAPVKY 206
>R13AA_ARATH (Q9SFU1) 60S ribosomal protein L13a-1| Length = 206 Score = 60.8 bits (146), Expect = 2e-09 Identities = 29/54 (53%), Positives = 38/54 (70%) Frame = -1 Query: 560 NYADTIXXXXXXXXXXXKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEILAPIKY 399 N+ DTI + Y+R+KQL+KLR KAEK AEEKLG+QL++LAP+KY Sbjct: 153 NHYDTIKELENKRKERAQAVYERKKQLSKLRAKAEKVAEEKLGSQLDVLAPVKY 206
>R13AB_ARATH (Q9LRX8) 60S ribosomal protein L13a-2| Length = 206 Score = 57.8 bits (138), Expect = 2e-08 Identities = 29/54 (53%), Positives = 36/54 (66%) Frame = -1 Query: 560 NYADTIXXXXXXXXXXXKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEILAPIKY 399 N+ DTI + Y+R+KQL KLR KAEK AEEKLG+QL++LA IKY Sbjct: 153 NHYDTIKELEVKRKERSQALYERKKQLTKLRAKAEKVAEEKLGSQLDVLASIKY 206
>RL13A_PICMA (O65055) 60S ribosomal protein L13a| Length = 206 Score = 49.7 bits (117), Expect = 6e-06 Identities = 25/54 (46%), Positives = 36/54 (66%) Frame = -1 Query: 560 NYADTIXXXXXXXXXXXKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEILAPIKY 399 ++ DTI +VSY+RRKQLAKLR KA + AE++L ++E+LA +KY Sbjct: 153 HHFDTITELEEKRKAKAQVSYERRKQLAKLRSKAVELAEKQLAPEMELLASLKY 206
>RL13A_BOVIN (Q3SZ90) 60S ribosomal protein L13a| Length = 202 Score = 32.0 bits (71), Expect = 1.2 Identities = 14/31 (45%), Positives = 22/31 (70%) Frame = -1 Query: 506 VSYDRRKQLAKLRVKAEKAAEEKLGTQLEIL 414 + Y ++KQL +LR +AEK E+K+G E+L Sbjct: 165 IHYRKKKQLMRLRKQAEKNIEKKIGKFTEVL 195
>RL13A_PONPY (Q5RA38) 60S ribosomal protein L13a| Length = 202 Score = 30.8 bits (68), Expect = 2.7 Identities = 13/31 (41%), Positives = 21/31 (67%) Frame = -1 Query: 506 VSYDRRKQLAKLRVKAEKAAEEKLGTQLEIL 414 + Y ++KQL +LR +AEK E+K+ E+L Sbjct: 165 IHYRKKKQLVRLRKQAEKNVEKKIDKYTEVL 195
>RL13A_HUMAN (P40429) 60S ribosomal protein L13a (23 kDa highly basic protein)| Length = 202 Score = 30.4 bits (67), Expect = 3.6 Identities = 13/31 (41%), Positives = 21/31 (67%) Frame = -1 Query: 506 VSYDRRKQLAKLRVKAEKAAEEKLGTQLEIL 414 + Y ++KQL +LR +AEK E+K+ E+L Sbjct: 165 IHYRKKKQLMRLRKQAEKNVEKKIDKYTEVL 195
>RL13A_MACFA (Q4R8Z2) 60S ribosomal protein L13a| Length = 202 Score = 29.3 bits (64), Expect = 7.9 Identities = 12/31 (38%), Positives = 21/31 (67%) Frame = -1 Query: 506 VSYDRRKQLAKLRVKAEKAAEEKLGTQLEIL 414 + Y ++KQL +LR +AEK E+K+ ++L Sbjct: 165 IHYRKKKQLMRLRKQAEKNVEKKIDKYTQVL 195
>T2R60_PONPY (Q645U7) Taste receptor type 2 member 60 (T2R60) (T2R56)| Length = 318 Score = 29.3 bits (64), Expect = 7.9 Identities = 19/60 (31%), Positives = 26/60 (43%) Frame = -3 Query: 258 LKFSTWSTVSFIKCVHLKILVNVYQVIIWCCSRFSSLQPWQPLVMACCGCFSDFLSYIKN 79 L FSTW +V + CV KI + V +W + S PW F+ L +I N Sbjct: 108 LWFSTWLSVFY--CV--KIATFTHPVFLWLKHKLSEWVPWMLFSSVGLSSFTTILFFIGN 163 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,407,674 Number of Sequences: 219361 Number of extensions: 1178852 Number of successful extensions: 2956 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 2851 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2954 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4585734400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)