ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags16o19 |
|---|---|
| Clone Library Name | barley_pub |
>ATP7_ARATH (Q9SJ12) Probable ATP synthase 24 kDa subunit, mitochondrial| precursor (EC 3.6.3.14) Length = 240 Score = 82.4 bits (202), Expect = 3e-16 Identities = 41/73 (56%), Positives = 51/73 (69%) Frame = -2 Query: 219 MGIXXXMMXAXXXIXKXIXKPLXRNDRKNMGLLLAEFDKINKKLGFRKEDLPKIEEELEM 40 +G M A + K I KPL R+D+K M LL+AEF+K NKKLG RKEDLPK EE LE+ Sbjct: 137 LGAEAMMFEALEKVEKDIKKPLLRSDKKGMDLLVAEFEKGNKKLGIRKEDLPKYEENLEL 196 Query: 39 QIAKAELTELKKE 1 +AKA+L ELK + Sbjct: 197 SMAKAQLDELKSD 209
>MEGF8_MOUSE (P60882) Multiple epidermal growth factor-like domains 8 (EGF-like| domain-containing protein 4) (Multiple EGF-like domain protein 4) Length = 2330 Score = 29.6 bits (65), Expect = 2.1 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Frame = +3 Query: 57 QSW-EDPPSESQAFCLSCQTLPREDPCSSC 143 ++W + PSE +A C++CQ D C SC Sbjct: 1822 ETWVAEGPSEDEAVCVNCQNNSYGDRCESC 1851
>MEGF8_RAT (Q9QYP0) Multiple epidermal growth factor-like domains 8 (EGF-like| domain-containing protein 4) (Multiple EGF-like domain protein 4) (Fragment) Length = 874 Score = 29.6 bits (65), Expect = 2.1 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Frame = +3 Query: 57 QSW-EDPPSESQAFCLSCQTLPREDPCSSC 143 ++W + PSE +A C++CQ D C SC Sbjct: 366 EAWVAEGPSEDEAVCVNCQNNSYGDRCESC 395
>HSLO_CLOPE (Q8XJ60) 33 kDa chaperonin (Heat shock protein 33 homolog) (HSP33)| Length = 319 Score = 28.5 bits (62), Expect = 4.7 Identities = 15/32 (46%), Positives = 18/32 (56%) Frame = -2 Query: 99 NKKLGFRKEDLPKIEEELEMQIAKAELTELKK 4 NK F KED+ K+ EE E IA E+KK Sbjct: 276 NKAYKFTKEDIGKLLEEKEKSIADEVSEEMKK 307
>MEGF8_HUMAN (Q7Z7M0) Multiple epidermal growth factor-like domains 8 (EGF-like| domain-containing protein 4) (Multiple EGF-like domain protein 4) Length = 2386 Score = 28.5 bits (62), Expect = 4.7 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Frame = +3 Query: 57 QSW-EDPPSESQAFCLSCQTLPREDPCSSC 143 ++W + PSE +A C++CQ + C SC Sbjct: 1878 ENWVTEGPSEDEAVCVNCQNNSYGEKCESC 1907
>MYO2_CAEEL (P12845) Myosin-2 (Myosin heavy chain C) (MHC C)| Length = 1947 Score = 28.1 bits (61), Expect = 6.1 Identities = 14/48 (29%), Positives = 24/48 (50%) Frame = -2 Query: 144 DRKNMGLLLAEFDKINKKLGFRKEDLPKIEEELEMQIAKAELTELKKE 1 D+KN L +K+ KL +K+ L + EE+ ++K +L E Sbjct: 1873 DKKNYDKLQELVEKLTAKLKLQKKQLEEAEEQANSHLSKYRTVQLSLE 1920
>BPA1_MOUSE (Q91ZU6) Bullous pemphigoid antigen 1, isoforms 1/2/3/4 (BPA)| (Hemidesmosomal plaque protein) (Dystonia musculorum protein) (Dystonin) Length = 7389 Score = 28.1 bits (61), Expect = 6.1 Identities = 16/52 (30%), Positives = 27/52 (51%) Frame = -2 Query: 180 IXKXIXKPLXRNDRKNMGLLLAEFDKINKKLGFRKEDLPKIEEELEMQIAKA 25 + + I PL R+D L + E +K+ K+L K+DL I + E ++A Sbjct: 1085 LIRQIRTPLERDDLHESMLRITEQEKLKKELDRLKDDLGTITNKCEEFFSQA 1136
>BPAEA_MOUSE (Q91ZU8) Bullous pemphigoid antigen 1, isoform 5 (BPA)| (Hemidesmosomal plaque protein) (Dystonia musculorum protein) (Dystonin) Length = 2611 Score = 28.1 bits (61), Expect = 6.1 Identities = 16/52 (30%), Positives = 27/52 (51%) Frame = -2 Query: 180 IXKXIXKPLXRNDRKNMGLLLAEFDKINKKLGFRKEDLPKIEEELEMQIAKA 25 + + I PL R+D L + E +K+ K+L K+DL I + E ++A Sbjct: 731 LIRQIRTPLERDDLHESMLRITEQEKLKKELDRLKDDLGTITNKCEEFFSQA 782
>SYS_BACSK (Q5WM19) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 424 Score = 28.1 bits (61), Expect = 6.1 Identities = 12/36 (33%), Positives = 23/36 (63%) Frame = -2 Query: 150 RNDRKNMGLLLAEFDKINKKLGFRKEDLPKIEEELE 43 + D+K+ L+AE ++++++ + E L IE ELE Sbjct: 63 KRDKKDANSLIAEMKQVSERIKEQDEQLRSIETELE 98
>RNC_HUMAN (Q9NRR4) Ribonuclease III (EC 3.1.26.3) (RNase III) (Drosha) (p241)| Length = 1374 Score = 27.7 bits (60), Expect = 8.0 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = +3 Query: 48 VLPQSWEDPPSESQAFCLSCQTLPRE 125 +L Q W DP S+ Q CL+ +T +E Sbjct: 1253 ILNQDWNDPKSQLQQCCLTLRTEGKE 1278
>OCLN_RAT (Q6P6T5) Occludin| Length = 523 Score = 27.7 bits (60), Expect = 8.0 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -2 Query: 123 LLAEFDKINKKLGFRKEDLPKIEEELEMQIAKAE 22 LLAE D++NK+L +L EE E +A A+ Sbjct: 447 LLAELDEVNKELSRLDRELDDYREESEEYMAAAD 480
>CH60_KLEPN (O66026) 60 kDa chaperonin (Protein Cpn60) (groEL protein)| (HSP60KP) Length = 547 Score = 27.7 bits (60), Expect = 8.0 Identities = 13/39 (33%), Positives = 23/39 (58%) Frame = -2 Query: 156 LXRNDRKNMGLLLAEFDKINKKLGFRKEDLPKIEEELEM 40 + N + +G L+AE DK+ K+ ED +E+EL++ Sbjct: 150 ISANSDETVGKLIAEVDKVGKEGVITVEDGTGLEDELDV 188
>ASP_DROME (Q9VC45) Protein abnormal spindle| Length = 1954 Score = 27.7 bits (60), Expect = 8.0 Identities = 11/39 (28%), Positives = 18/39 (46%) Frame = +3 Query: 15 PSAQLWQFAFQVLPQSWEDPPSESQAFCLSCQTLPREDP 131 PS Q W+ P +W PP ++ + P+E+P Sbjct: 180 PSKQTWRVTAPSRPAAWAHPPPQAPLVEKNVYKTPQEEP 218 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 24,372,799 Number of Sequences: 219361 Number of extensions: 343981 Number of successful extensions: 1738 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 1700 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1738 length of database: 80,573,946 effective HSP length: 65 effective length of database: 66,315,481 effective search space used: 1591571544 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
