>gb|AY614716.1| Triticum aestivum mitochondrial ATP synthase precursor mRNA,
           complete cds; nuclear gene for mitochondrial product
          Length = 717

 Score =  248 bits (125), Expect = 8e-63
 Identities = 200/230 (86%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttccttcttaagttccgtcagctcagctttggcaatttgcatttcaagttcttcctcaat 60
           ||||||||| ||||||||||||||||||||||||| || ||||||||| |  ||||||||
Sbjct: 621 ttccttcttgagttccgtcagctcagctttggcaagttccatttcaagattctcctcaat 562

                                                                       
Query: 61  cttgggaagatcctccttccgaaagccaagctttttgtttatcttgtcaaactctgccaa 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttgggaagatcctccttccgaatgccaagctttttgtttatcttgtcaaactctgccaa 502

                                                                       
Query: 121 gagaagacccatgttcttcctgtcattcctnataagaggcttnttaatctncttntnaat 180
           ||| |||  |||||||||| ||||| |||| | ||||||||| ||||| | ||| | || 
Sbjct: 501 gaggagattcatgttcttcttgtcactcctcagaagaggcttcttaatgtccttctcaac 442

                                                             
Query: 181 tntntnganagcttncatcatnatatnctnaatacccatatnatntataa 230
           | | | || ||||| |||||| |||| || ||||||||||| || |||||
Sbjct: 441 tttctcgagagcttccatcatcatatcctcaatacccatatcatctataa 392

>ref|XM_464007.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1126

 Score =  192 bits (97), Expect = 4e-46
 Identities = 154/174 (88%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttccttcttaagttccgtcagctcagctttggcaatttgcatttcaagttcttcctcaat 60
           |||||||||||| ||||||||||||  ||||||||||| || |||||| |||||||||||
Sbjct: 712 ttccttcttaagctccgtcagctcacttttggcaatttccaattcaagctcttcctcaat 653

                                                                       
Query: 61  cttgggaagatcctccttccgaaagccaagctttttgtttatcttgtcaaactctgccaa 120
           |||||||||||||||||| || |  |||||||||||||||||||| ||||||||||||||
Sbjct: 652 cttgggaagatcctccttgcggattccaagctttttgtttatcttctcaaactctgccaa 593

                                                                 
Query: 121 gagaagacccatgttcttcctgtcattcctnataagaggcttnttaatctnctt 174
           ||| |||||||| |||||| ||||| |||| | ||| ||||| ||||||| |||
Sbjct: 592 gaggagacccatattcttcttgtcactcctcagaagtggcttcttaatctcctt 539

>dbj|AK066913.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089B14, full
           insert sequence
          Length = 1126

 Score =  192 bits (97), Expect = 4e-46
 Identities = 154/174 (88%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttccttcttaagttccgtcagctcagctttggcaatttgcatttcaagttcttcctcaat 60
           |||||||||||| ||||||||||||  ||||||||||| || |||||| |||||||||||
Sbjct: 712 ttccttcttaagctccgtcagctcacttttggcaatttccaattcaagctcttcctcaat 653

                                                                       
Query: 61  cttgggaagatcctccttccgaaagccaagctttttgtttatcttgtcaaactctgccaa 120
           |||||||||||||||||| || |  |||||||||||||||||||| ||||||||||||||
Sbjct: 652 cttgggaagatcctccttgcggattccaagctttttgtttatcttctcaaactctgccaa 593

                                                                 
Query: 121 gagaagacccatgttcttcctgtcattcctnataagaggcttnttaatctnctt 174
           ||| |||||||| |||||| ||||| |||| | ||| ||||| ||||||| |||
Sbjct: 592 gaggagacccatattcttcttgtcactcctcagaagtggcttcttaatctcctt 539

>gb|AY103737.1| Zea mays PCO126068 mRNA sequence
          Length = 1045

 Score =  133 bits (67), Expect = 3e-28
 Identities = 106/119 (89%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttccttcttaagttccgtcagctcagctttggcaatttgcatttcaagttcttcctcaat 60
           ||||||||||||||| |||||||||  ||||||||| | || ||||||||||| ||| ||
Sbjct: 762 ttccttcttaagttcagtcagctcacttttggcaatctccaattcaagttctttctcgat 703

                                                                      
Query: 61  cttgggaagatcctccttccgaaagccaagctttttgtttatcttgtcaaactctgcca 119
           ||| ||||||||||||||||||| ||||||||||  ||| |||||||||||||||||||
Sbjct: 702 cttaggaagatcctccttccgaatgccaagctttgcgttaatcttgtcaaactctgcca 644

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  107 bits (54), Expect = 2e-20
 Identities = 72/78 (92%)
 Strand = Plus / Minus

                                                                           
Query: 1       ttccttcttaagttccgtcagctcagctttggcaatttgcatttcaagttcttcctcaat 60
               |||||||||||| ||||||||||||  ||||||||||| || |||||| |||||||||||
Sbjct: 1641187 ttccttcttaagctccgtcagctcacttttggcaatttccaattcaagctcttcctcaat 1641128

                                 
Query: 61      cttgggaagatcctcctt 78
               ||||||||||||||||||
Sbjct: 1641127 cttgggaagatcctcctt 1641110



 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 74/84 (88%)
 Strand = Plus / Minus

                                                                           
Query: 91      ctttttgtttatcttgtcaaactctgccaagagaagacccatgttcttcctgtcattcct 150
               ||||||||||||||| ||||||||||||||||| |||||||| |||||| ||||| ||||
Sbjct: 1640623 ctttttgtttatcttctcaaactctgccaagaggagacccatattcttcttgtcactcct 1640564

                                       
Query: 151     nataagaggcttnttaatctnctt 174
                | ||| ||||| ||||||| |||
Sbjct: 1640563 cagaagtggcttcttaatctcctt 1640540

>dbj|AP004150.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1007_D04
          Length = 125503

 Score =  107 bits (54), Expect = 2e-20
 Identities = 72/78 (92%)
 Strand = Plus / Minus

                                                                         
Query: 1     ttccttcttaagttccgtcagctcagctttggcaatttgcatttcaagttcttcctcaat 60
             |||||||||||| ||||||||||||  ||||||||||| || |||||| |||||||||||
Sbjct: 78290 ttccttcttaagctccgtcagctcacttttggcaatttccaattcaagctcttcctcaat 78231

                               
Query: 61    cttgggaagatcctcctt 78
             ||||||||||||||||||
Sbjct: 78230 cttgggaagatcctcctt 78213



 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 74/84 (88%)
 Strand = Plus / Minus

                                                                         
Query: 91    ctttttgtttatcttgtcaaactctgccaagagaagacccatgttcttcctgtcattcct 150
             ||||||||||||||| ||||||||||||||||| |||||||| |||||| ||||| ||||
Sbjct: 77726 ctttttgtttatcttctcaaactctgccaagaggagacccatattcttcttgtcactcct 77667

                                     
Query: 151   nataagaggcttnttaatctnctt 174
              | ||| ||||| ||||||| |||
Sbjct: 77666 cagaagtggcttcttaatctcctt 77643

>emb|X74296.1|GMATPSYNS G.max gene for ATP synthase subunit
          Length = 2375

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 101  atcttgtcaaactctgccaagagaag 126
            ||||| ||||||||||||||||||||
Sbjct: 2066 atcttatcaaactctgccaagagaag 2041

>gb|AC093599.6| Homo sapiens BAC clone RP11-285C1 from 4, complete sequence
          Length = 187937

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 117   ccaagagaagacccatgttcttcctgtcattcc 149
             |||| ||||||||||||  ||||||||||||||
Sbjct: 22885 ccaacagaagacccatgggcttcctgtcattcc 22853

>emb|AL845273.7| Mouse DNA sequence from clone RP23-334D15 on chromosome 2, complete
             sequence
          Length = 158861

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 129   ccatgttcttcctgtcattcc 149
             |||||||||||||||||||||
Sbjct: 30672 ccatgttcttcctgtcattcc 30652

>emb|AL590308.8| Human DNA sequence from clone RP11-501K14 on chromosome 6 Contains the
             5' end of the REPS1 gene for RALBP1 associated Eps domain
             containing 1, the gene for hypothetical protein PRO2013
             and two CpG islands, complete sequence
          Length = 100296

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   actctgccaagagaagaccc 130
             ||||||||||||||||||||
Sbjct: 30932 actctgccaagagaagaccc 30951

>emb|AL445470.5| Human DNA sequence from clone RP11-421L10 on chromosome 1 Contains a
             novel gene, complete sequence
          Length = 86332

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    aatttgcatttcaagttctt 53
             ||||||||||||||||||||
Sbjct: 69084 aatttgcatttcaagttctt 69103

>gb|AY046926.1| Lactococcus lactis subsp. cremoris YdjD (ydjD), Nox (nox), and Ssb
            (ssb) genes, complete cds; and GroES (groES) gene,
            partial cds
          Length = 3172

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 86   ccaagctttttgtttatctt 105
            ||||||||||||||||||||
Sbjct: 2093 ccaagctttttgtttatctt 2074

>dbj|AK128488.1| Homo sapiens cDNA FLJ46636 fis, clone TRACH3002188
          Length = 4492

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 34   aatttgcatttcaagttctt 53
            ||||||||||||||||||||
Sbjct: 1755 aatttgcatttcaagttctt 1736

>gb|AC104664.2| Homo sapiens BAC clone RP11-724H6 from 4, complete sequence
          Length = 158145

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 102    tcttgtcaaactctgccaagagaa 125
              |||||||| |||||||||||||||
Sbjct: 111366 tcttgtcagactctgccaagagaa 111343

>gb|AC155311.2| Mus musculus BAC clone RP23-407F7 from chromosome 12, complete sequence
          Length = 166104

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 25    agctttggcaatttgcattt 44
             ||||||||||||||||||||
Sbjct: 62736 agctttggcaatttgcattt 62755

>ref|NM_001010913.2| Homo sapiens chromosome 1 open reading frame 140 (C1orf140), mRNA
          Length = 4492

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 34   aatttgcatttcaagttctt 53
            ||||||||||||||||||||
Sbjct: 1755 aatttgcatttcaagttctt 1736

>gb|AC169088.2| Gallus gallus BAC clone CH261-100B3 from chromosome ul, complete sequence
          Length = 214859

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 89     agctttttgtttatcttgtcaaac 112
              ||||||| ||||||||||||||||
Sbjct: 155144 agcttttagtttatcttgtcaaac 155121


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,900,950
Number of Sequences: 3902068
Number of extensions: 1900950
Number of successful extensions: 38842
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38805
Number of HSP's gapped (non-prelim): 37
length of query: 271
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 249
effective length of database: 17,147,199,772
effective search space: 4269652743228
effective search space used: 4269652743228
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)