ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags17d19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MT21_ORYSA (P94029) Metallothionein-like protein type 2 36 0.070
2SOX14_DROME (P40656) Putative transcription factor SOX-14 30 6.6

>MT21_ORYSA (P94029) Metallothionein-like protein type 2|
          Length = 82

 Score = 36.2 bits (82), Expect = 0.070
 Identities = 20/38 (52%), Positives = 24/38 (63%)
 Frame = -3

Query: 506 MYPGMDEGVSTTATSSQALVMGVASSKGNGPSFEAAAA 393
           MYP M E V+TT    Q ++MGVA SKG+    EA AA
Sbjct: 25  MYPEMAEEVTTT----QTVIMGVAPSKGHAEGLEAGAA 58



to top

>SOX14_DROME (P40656) Putative transcription factor SOX-14|
          Length = 472

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +1

Query: 307 PSPCVDSTDHLQVHGLQVQLGPHLHPPFSAAAASNEGPLPLEDATPMTRAWEEVAVVLTP 486
           P+P  DST             PH  PPFS + +    P P    TP  +  +  A +  P
Sbjct: 42  PAPKADST-------------PHTLPPFSPSPSPASSPSPAPAQTPGAQKTQSQAAITHP 88

Query: 487 SSI 495
           +++
Sbjct: 89  AAV 91


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,007,538
Number of Sequences: 219361
Number of extensions: 1174957
Number of successful extensions: 3301
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3300
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4986986160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top