ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags16o16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC117215.3| Mus musculus BAC clone RP23-308M1 from 7, complet... 40 2.3
2gb|AC159883.2| Mus musculus BAC clone RP24-490A17 from chromosom... 40 2.3
3emb|BX323861.10| Zebrafish DNA sequence from clone CH211-209F23 ... 40 2.3
4gb|AY104015.1| Zea mays PCO109331 mRNA sequence 40 2.3
5gb|AC151839.2| Mus musculus BAC clone RP23-191M5 from 7, complet... 40 2.3
6gb|AC147742.13| Mus musculus chromosome 7, clone RP23-202M23, co... 40 2.3
7dbj|AB024293.1| Zea mays ZmHP1 mRNA for histidine-containing pho... 40 2.3
8gb|AC118594.6| Mus musculus chromosome 1, clone RP24-479J20, com... 38 9.2
9gb|AY157024.2| Homo sapiens peroxisome proliferative activated r... 38 9.2
10emb|CR589881.11| Zebrafish DNA sequence from clone DKEY-188M1 in... 38 9.2
11emb|AL137002.19| Human DNA sequence from clone RP11-98F14 on chr... 38 9.2
12emb|AJ719643.1| Gallus gallus mRNA for hypothetical protein, clo... 38 9.2
13ref|NM_001006256.1| Gallus gallus SAM domain, SH3 domain and nuc... 38 9.2
14dbj|AK024478.1| Homo sapiens mRNA for FLJ00071 protein, partial cds 38 9.2
15dbj|AP001978.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 38 9.2
16gb|AC140368.3| Mus musculus BAC clone RP23-198E1 from 14, comple... 38 9.2
17emb|AL935158.7| Zebrafish DNA sequence from clone CH211-232G13, ... 38 9.2
18gb|AC090947.2| Homo sapiens chromosome 3 clone RP11-30G23 map 3p... 38 9.2
19gb|AC093174.2| Homo sapiens chromosome 3 clone RP11-167M22 map 3... 38 9.2 
>gb|AC117215.3| Mus musculus BAC clone RP23-308M1 from 7, complete sequence
          Length = 192092

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 80     aaaaggttaaaatgtaaagtacac 103
              |||| |||||||||||||||||||
Sbjct: 171415 aaaatgttaaaatgtaaagtacac 171392
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>gb|AC159883.2| Mus musculus BAC clone RP24-490A17 from chromosome 9, complete sequence
          Length = 140400

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    cagggcagatccataaccca 46
             ||||||||||||||||||||
Sbjct: 83905 cagggcagatccataaccca 83924
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>emb|BX323861.10| Zebrafish DNA sequence from clone CH211-209F23 in linkage group 2,
              complete sequence
          Length = 173663

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 80     aaaaggttaaaatgtaaagt 99
              ||||||||||||||||||||
Sbjct: 100535 aaaaggttaaaatgtaaagt 100554
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>gb|AY104015.1| Zea mays PCO109331 mRNA sequence
          Length = 1069

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 33  agatccataacccagcacag 52
           ||||||||||||||||||||
Sbjct: 862 agatccataacccagcacag 843
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>gb|AC151839.2| Mus musculus BAC clone RP23-191M5 from 7, complete sequence
          Length = 232568

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 80     aaaaggttaaaatgtaaagtacac 103
              |||| |||||||||||||||||||
Sbjct: 114456 aaaatgttaaaatgtaaagtacac 114433
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>gb|AC147742.13| Mus musculus chromosome 7, clone RP23-202M23, complete sequence
          Length = 194167

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 80     aaaaggttaaaatgtaaagtacac 103
              |||| |||||||||||||||||||
Sbjct: 150193 aaaatgttaaaatgtaaagtacac 150170
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>dbj|AB024293.1| Zea mays ZmHP1 mRNA for histidine-containing phosphotransfer
           protein, complete cds
          Length = 896

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 33  agatccataacccagcacag 52
           ||||||||||||||||||||
Sbjct: 708 agatccataacccagcacag 689
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>gb|AC118594.6| Mus musculus chromosome 1, clone RP24-479J20, complete sequence
          Length = 209825

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 80     aaaaggttaaaatgtaaag 98
              |||||||||||||||||||
Sbjct: 171338 aaaaggttaaaatgtaaag 171356
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>gb|AY157024.2| Homo sapiens peroxisome proliferative activated receptor gamma (PPARG)
             gene, complete cds
          Length = 148828

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 80    aaaaggttaaaatgtaaag 98
             |||||||||||||||||||
Sbjct: 66796 aaaaggttaaaatgtaaag 66778
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>emb|CR589881.11| Zebrafish DNA sequence from clone DKEY-188M1 in linkage group 14,
              complete sequence
          Length = 179964

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 80     aaaaggttaaaatgtaaag 98
              |||||||||||||||||||
Sbjct: 146663 aaaaggttaaaatgtaaag 146645
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>emb|AL137002.19| Human DNA sequence from clone RP11-98F14 on chromosome 13q22.1-31.1
              Contains the 3' end of the MCF2L gene for MCF.2 cell line
              derived transforming sequence-like, the F7 gene for
              coagulation factor VII (serum prothrombin conversion
              accelerator), the F10 gene for coagulation factor X, a
              lysyl-tRNA synthetase (KARS) pseudogene, the PROZ gene for
              protein Z, vitamin K-dependent plasma glycoprotein (PZ),
              the 3' end of a novel gene (FLJ11305) and six CpG islands,
              complete sequence
          Length = 132933

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 20     cagaagacagggcagatcc 38
              |||||||||||||||||||
Sbjct: 111971 cagaagacagggcagatcc 111953
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>emb|AJ719643.1| Gallus gallus mRNA for hypothetical protein, clone 4o8
          Length = 2227

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 15  aaacccagaagacagggca 33
           |||||||||||||||||||
Sbjct: 930 aaacccagaagacagggca 948
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>ref|NM_001006256.1| Gallus gallus SAM domain, SH3 domain and nuclear localisation
           signals, 1 (SAMSN1), mRNA
          Length = 2227

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 15  aaacccagaagacagggca 33
           |||||||||||||||||||
Sbjct: 930 aaacccagaagacagggca 948
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>dbj|AK024478.1| Homo sapiens mRNA for FLJ00071 protein, partial cds
          Length = 4194

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 20   cagaagacagggcagatcc 38
            |||||||||||||||||||
Sbjct: 1281 cagaagacagggcagatcc 1299
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>dbj|AP001978.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-258O13, complete
             sequence
          Length = 161602

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 133   actgccaatagcattccct 151
             |||||||||||||||||||
Sbjct: 26929 actgccaatagcattccct 26947
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>gb|AC140368.3| Mus musculus BAC clone RP23-198E1 from 14, complete sequence
          Length = 177084

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 143   gcattccctcgtttttgcc 161
             |||||||||||||||||||
Sbjct: 58578 gcattccctcgtttttgcc 58560
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>emb|AL935158.7| Zebrafish DNA sequence from clone CH211-232G13, complete sequence
          Length = 149973

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 80    aaaaggttaaaatgtaaag 98
             |||||||||||||||||||
Sbjct: 59105 aaaaggttaaaatgtaaag 59123
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>gb|AC090947.2| Homo sapiens chromosome 3 clone RP11-30G23 map 3p, complete sequence
          Length = 166049

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 80     aaaaggttaaaatgtaaag 98
              |||||||||||||||||||
Sbjct: 144086 aaaaggttaaaatgtaaag 144104
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>gb|AC093174.2| Homo sapiens chromosome 3 clone RP11-167M22 map 3p, complete sequence
          Length = 135675

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 80    aaaaggttaaaatgtaaag 98
             |||||||||||||||||||
Sbjct: 82901 aaaaggttaaaatgtaaag 82883


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,289,797
Number of Sequences: 3902068
Number of extensions: 1289797
Number of successful extensions: 84555
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84523
Number of HSP's gapped (non-prelim): 32
length of query: 186
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 164
effective length of database: 17,147,199,772
effective search space: 2812140762608
effective search space used: 2812140762608
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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