| Clone Name | rbags16o12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY107376.1| Zea mays PCO134646 mRNA sequence Length = 845 Score = 141 bits (71), Expect = 3e-30 Identities = 95/103 (92%) Strand = Plus / Plus Query: 428 tgaaccagtaggccgagtcctttgggtaccgcttgagggtggtgaagtcgacgtacacga 487 |||||||||| ||||||||||| ||||||||||| || || | |||||||||||| |||| Sbjct: 394 tgaaccagtacgccgagtccttggggtaccgcttcagcgtcgcgaagtcgacgtagacga 453 Query: 488 tgccgaacttggaggtgtagcccgacagccactcgaagttgtc 530 ||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 454 tgccgaacttggacgtgtagcccgacagccactcgaagttgtc 496
>ref|XM_469438.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2080 Score = 119 bits (60), Expect = 1e-23 Identities = 117/136 (86%) Strand = Plus / Minus Query: 397 gagccgggccccgacgcctgcagcatgttcttgaaccagtaggccgagtcctttgggtac 456 ||||| ||||| || ||||||||||||||||||||||||| ||| |||||||| |||||| Sbjct: 1633 gagccaggccctgatgcctgcagcatgttcttgaaccagttggctgagtccttggggtac 1574 Query: 457 cgcttgagggtggtgaagtcgacgtacacgatgccgaacttggaggtgtagcccgacagc 516 || ||||| || ||||| || || || || ||||||||||| || ||||| || |||||| Sbjct: 1573 cgtttgagagtagtgaaatcaacatagacaatgccgaactttgatgtgtaacctgacagc 1514 Query: 517 cactcgaagttgtcga 532 ||||||||||| |||| Sbjct: 1513 cactcgaagttatcga 1498
>gb|AC091670.7| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1212_C08 map R2847, complete sequence Length = 100918 Score = 119 bits (60), Expect = 1e-23 Identities = 117/136 (86%) Strand = Plus / Plus Query: 397 gagccgggccccgacgcctgcagcatgttcttgaaccagtaggccgagtcctttgggtac 456 ||||| ||||| || ||||||||||||||||||||||||| ||| |||||||| |||||| Sbjct: 90006 gagccaggccctgatgcctgcagcatgttcttgaaccagttggctgagtccttggggtac 90065 Query: 457 cgcttgagggtggtgaagtcgacgtacacgatgccgaacttggaggtgtagcccgacagc 516 || ||||| || ||||| || || || || ||||||||||| || ||||| || |||||| Sbjct: 90066 cgtttgagagtagtgaaatcaacatagacaatgccgaactttgatgtgtaacctgacagc 90125 Query: 517 cactcgaagttgtcga 532 ||||||||||| |||| Sbjct: 90126 cactcgaagttatcga 90141 Score = 97.6 bits (49), Expect = 4e-17 Identities = 97/113 (85%) Strand = Plus / Plus Query: 418 agcatgttcttgaaccagtaggccgagtcctttgggtaccgcttgagggtggtgaagtcg 477 ||||||| | |||||||||||||||| |||| |||| |||| ||| ||| |||||||| Sbjct: 81461 agcatgtccctgaaccagtaggccgacgccttggggtggcgctcgagcgtgttgaagtcg 81520 Query: 478 acgtacacgatgccgaacttggaggtgtagcccgacagccactcgaagttgtc 530 ||||| ||||| || |||||||| ||||| || |||||||||||||||||||| Sbjct: 81521 acgtagacgataccaaacttggacgtgtaacctgacagccactcgaagttgtc 81573
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 119 bits (60), Expect = 1e-23 Identities = 117/136 (86%) Strand = Plus / Plus Query: 397 gagccgggccccgacgcctgcagcatgttcttgaaccagtaggccgagtcctttgggtac 456 ||||| ||||| || ||||||||||||||||||||||||| ||| |||||||| |||||| Sbjct: 27954278 gagccaggccctgatgcctgcagcatgttcttgaaccagttggctgagtccttggggtac 27954337 Query: 457 cgcttgagggtggtgaagtcgacgtacacgatgccgaacttggaggtgtagcccgacagc 516 || ||||| || ||||| || || || || ||||||||||| || ||||| || |||||| Sbjct: 27954338 cgtttgagagtagtgaaatcaacatagacaatgccgaactttgatgtgtaacctgacagc 27954397 Query: 517 cactcgaagttgtcga 532 ||||||||||| |||| Sbjct: 27954398 cactcgaagttatcga 27954413 Score = 97.6 bits (49), Expect = 4e-17 Identities = 97/113 (85%) Strand = Plus / Plus Query: 418 agcatgttcttgaaccagtaggccgagtcctttgggtaccgcttgagggtggtgaagtcg 477 ||||||| | |||||||||||||||| |||| |||| |||| ||| ||| |||||||| Sbjct: 27945733 agcatgtccctgaaccagtaggccgacgccttggggtggcgctcgagcgtgttgaagtcg 27945792 Query: 478 acgtacacgatgccgaacttggaggtgtagcccgacagccactcgaagttgtc 530 ||||| ||||| || |||||||| ||||| || |||||||||||||||||||| Sbjct: 27945793 acgtagacgataccaaacttggacgtgtaacctgacagccactcgaagttgtc 27945845
>gb|AC133334.8| Oryza sativa chromosome 3 BAC OSJNBa0004L11 genomic sequence, complete sequence Length = 133889 Score = 119 bits (60), Expect = 1e-23 Identities = 117/136 (86%) Strand = Plus / Minus Query: 397 gagccgggccccgacgcctgcagcatgttcttgaaccagtaggccgagtcctttgggtac 456 ||||| ||||| || ||||||||||||||||||||||||| ||| |||||||| |||||| Sbjct: 70748 gagccaggccctgatgcctgcagcatgttcttgaaccagttggctgagtccttggggtac 70689 Query: 457 cgcttgagggtggtgaagtcgacgtacacgatgccgaacttggaggtgtagcccgacagc 516 || ||||| || ||||| || || || || ||||||||||| || ||||| || |||||| Sbjct: 70688 cgtttgagagtagtgaaatcaacatagacaatgccgaactttgatgtgtaacctgacagc 70629 Query: 517 cactcgaagttgtcga 532 ||||||||||| |||| Sbjct: 70628 cactcgaagttatcga 70613 Score = 97.6 bits (49), Expect = 4e-17 Identities = 97/113 (85%) Strand = Plus / Minus Query: 418 agcatgttcttgaaccagtaggccgagtcctttgggtaccgcttgagggtggtgaagtcg 477 ||||||| | |||||||||||||||| |||| |||| |||| ||| ||| |||||||| Sbjct: 79293 agcatgtccctgaaccagtaggccgacgccttggggtggcgctcgagcgtgttgaagtcg 79234 Query: 478 acgtacacgatgccgaacttggaggtgtagcccgacagccactcgaagttgtc 530 ||||| ||||| || |||||||| ||||| || |||||||||||||||||||| Sbjct: 79233 acgtagacgataccaaacttggacgtgtaacctgacagccactcgaagttgtc 79181
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 119 bits (60), Expect = 1e-23 Identities = 117/136 (86%) Strand = Plus / Plus Query: 397 gagccgggccccgacgcctgcagcatgttcttgaaccagtaggccgagtcctttgggtac 456 ||||| ||||| || ||||||||||||||||||||||||| ||| |||||||| |||||| Sbjct: 28045602 gagccaggccctgatgcctgcagcatgttcttgaaccagttggctgagtccttggggtac 28045661 Query: 457 cgcttgagggtggtgaagtcgacgtacacgatgccgaacttggaggtgtagcccgacagc 516 || ||||| || ||||| || || || || ||||||||||| || ||||| || |||||| Sbjct: 28045662 cgtttgagagtagtgaaatcaacatagacaatgccgaactttgatgtgtaacctgacagc 28045721 Query: 517 cactcgaagttgtcga 532 ||||||||||| |||| Sbjct: 28045722 cactcgaagttatcga 28045737 Score = 97.6 bits (49), Expect = 4e-17 Identities = 97/113 (85%) Strand = Plus / Plus Query: 418 agcatgttcttgaaccagtaggccgagtcctttgggtaccgcttgagggtggtgaagtcg 477 ||||||| | |||||||||||||||| |||| |||| |||| ||| ||| |||||||| Sbjct: 28037057 agcatgtccctgaaccagtaggccgacgccttggggtggcgctcgagcgtgttgaagtcg 28037116 Query: 478 acgtacacgatgccgaacttggaggtgtagcccgacagccactcgaagttgtc 530 ||||| ||||| || |||||||| ||||| || |||||||||||||||||||| Sbjct: 28037117 acgtagacgataccaaacttggacgtgtaacctgacagccactcgaagttgtc 28037169
>dbj|AK120790.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023011K21, full insert sequence Length = 2082 Score = 119 bits (60), Expect = 1e-23 Identities = 117/136 (86%) Strand = Plus / Minus Query: 397 gagccgggccccgacgcctgcagcatgttcttgaaccagtaggccgagtcctttgggtac 456 ||||| ||||| || ||||||||||||||||||||||||| ||| |||||||| |||||| Sbjct: 1635 gagccaggccctgatgcctgcagcatgttcttgaaccagttggctgagtccttggggtac 1576 Query: 457 cgcttgagggtggtgaagtcgacgtacacgatgccgaacttggaggtgtagcccgacagc 516 || ||||| || ||||| || || || || ||||||||||| || ||||| || |||||| Sbjct: 1575 cgtttgagagtagtgaaatcaacatagacaatgccgaactttgatgtgtaacctgacagc 1516 Query: 517 cactcgaagttgtcga 532 ||||||||||| |||| Sbjct: 1515 cactcgaagttatcga 1500
>dbj|AK105850.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-G08, full insert sequence Length = 1387 Score = 119 bits (60), Expect = 1e-23 Identities = 117/136 (86%) Strand = Plus / Minus Query: 397 gagccgggccccgacgcctgcagcatgttcttgaaccagtaggccgagtcctttgggtac 456 ||||| ||||| || ||||||||||||||||||||||||| ||| |||||||| |||||| Sbjct: 1018 gagccaggccctgatgcctgcagcatgttcttgaaccagttggctgagtccttggggtac 959 Query: 457 cgcttgagggtggtgaagtcgacgtacacgatgccgaacttggaggtgtagcccgacagc 516 || ||||| || ||||| || || || || ||||||||||| || ||||| || |||||| Sbjct: 958 cgtttgagagtagtgaaatcaacatagacaatgccgaactttgatgtgtaacctgacagc 899 Query: 517 cactcgaagttgtcga 532 ||||||||||| |||| Sbjct: 898 cactcgaagttatcga 883
>dbj|AK059517.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-C01, full insert sequence Length = 1336 Score = 119 bits (60), Expect = 1e-23 Identities = 117/136 (86%) Strand = Plus / Minus Query: 397 gagccgggccccgacgcctgcagcatgttcttgaaccagtaggccgagtcctttgggtac 456 ||||| ||||| || ||||||||||||||||||||||||| ||| |||||||| |||||| Sbjct: 889 gagccaggccctgatgcctgcagcatgttcttgaaccagttggctgagtccttggggtac 830 Query: 457 cgcttgagggtggtgaagtcgacgtacacgatgccgaacttggaggtgtagcccgacagc 516 || ||||| || ||||| || || || || ||||||||||| || ||||| || |||||| Sbjct: 829 cgtttgagagtagtgaaatcaacatagacaatgccgaactttgatgtgtaacctgacagc 770 Query: 517 cactcgaagttgtcga 532 ||||||||||| |||| Sbjct: 769 cactcgaagttatcga 754
>ref|XM_469436.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1849 Score = 97.6 bits (49), Expect = 4e-17 Identities = 97/113 (85%) Strand = Plus / Minus Query: 418 agcatgttcttgaaccagtaggccgagtcctttgggtaccgcttgagggtggtgaagtcg 477 ||||||| | |||||||||||||||| |||| |||| |||| ||| ||| |||||||| Sbjct: 1597 agcatgtccctgaaccagtaggccgacgccttggggtggcgctcgagcgtgttgaagtcg 1538 Query: 478 acgtacacgatgccgaacttggaggtgtagcccgacagccactcgaagttgtc 530 ||||| ||||| || |||||||| ||||| || |||||||||||||||||||| Sbjct: 1537 acgtagacgataccaaacttggacgtgtaacctgacagccactcgaagttgtc 1485
>gb|U28047.2|OSU28047 Oryza sativa beta-glucosidase mRNA, complete cds Length = 1909 Score = 97.6 bits (49), Expect = 4e-17 Identities = 97/113 (85%) Strand = Plus / Minus Query: 418 agcatgttcttgaaccagtaggccgagtcctttgggtaccgcttgagggtggtgaagtcg 477 ||||||| | |||||||||||||||| |||| |||| |||| ||| ||| |||||||| Sbjct: 1608 agcatgtccctgaaccagtaggccgacgccttggggtggcgctcgagcgtgttgaagtcg 1549 Query: 478 acgtacacgatgccgaacttggaggtgtagcccgacagccactcgaagttgtc 530 ||||| ||||| || |||||||| ||||| || |||||||||||||||||||| Sbjct: 1548 acgtagacgataccaaacttggacgtgtaacctgacagccactcgaagttgtc 1496
>dbj|AK105026.2| Oryza sativa (japonica cultivar-group) cDNA clone:001-011-H02, full insert sequence Length = 1846 Score = 97.6 bits (49), Expect = 4e-17 Identities = 97/113 (85%) Strand = Plus / Minus Query: 418 agcatgttcttgaaccagtaggccgagtcctttgggtaccgcttgagggtggtgaagtcg 477 ||||||| | |||||||||||||||| |||| |||| |||| ||| ||| |||||||| Sbjct: 1600 agcatgtccctgaaccagtaggccgacgccttggggtggcgctcgagcgtgttgaagtcg 1541 Query: 478 acgtacacgatgccgaacttggaggtgtagcccgacagccactcgaagttgtc 530 ||||| ||||| || |||||||| ||||| || |||||||||||||||||||| Sbjct: 1540 acgtagacgataccaaacttggacgtgtaacctgacagccactcgaagttgtc 1488
>dbj|AK103027.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117C01, full insert sequence Length = 1857 Score = 97.6 bits (49), Expect = 4e-17 Identities = 97/113 (85%) Strand = Plus / Minus Query: 418 agcatgttcttgaaccagtaggccgagtcctttgggtaccgcttgagggtggtgaagtcg 477 ||||||| | |||||||||||||||| |||| |||| |||| ||| ||| |||||||| Sbjct: 1599 agcatgtccctgaaccagtaggccgacgccttggggtggcgctcgagcgtgttgaagtcg 1540 Query: 478 acgtacacgatgccgaacttggaggtgtagcccgacagccactcgaagttgtc 530 ||||| ||||| || |||||||| ||||| || |||||||||||||||||||| Sbjct: 1539 acgtagacgataccaaacttggacgtgtaacctgacagccactcgaagttgtc 1487
>dbj|AK100165.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023021K07, full insert sequence Length = 1894 Score = 97.6 bits (49), Expect = 4e-17 Identities = 97/113 (85%) Strand = Plus / Minus Query: 418 agcatgttcttgaaccagtaggccgagtcctttgggtaccgcttgagggtggtgaagtcg 477 ||||||| | |||||||||||||||| |||| |||| |||| ||| ||| |||||||| Sbjct: 1603 agcatgtccctgaaccagtaggccgacgccttggggtggcgctcgagcgtgttgaagtcg 1544 Query: 478 acgtacacgatgccgaacttggaggtgtagcccgacagccactcgaagttgtc 530 ||||| ||||| || |||||||| ||||| || |||||||||||||||||||| Sbjct: 1543 acgtagacgataccaaacttggacgtgtaacctgacagccactcgaagttgtc 1491
>dbj|AK059920.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-G08, full insert sequence Length = 1302 Score = 97.6 bits (49), Expect = 4e-17 Identities = 97/113 (85%) Strand = Plus / Minus Query: 418 agcatgttcttgaaccagtaggccgagtcctttgggtaccgcttgagggtggtgaagtcg 477 ||||||| | |||||||||||||||| |||| |||| |||| ||| ||| |||||||| Sbjct: 1044 agcatgtccctgaaccagtaggccgacgccttggggtggcgctcgagcgtgttgaagtcg 985 Query: 478 acgtacacgatgccgaacttggaggtgtagcccgacagccactcgaagttgtc 530 ||||| ||||| || |||||||| ||||| || |||||||||||||||||||| Sbjct: 984 acgtagacgataccaaacttggacgtgtaacctgacagccactcgaagttgtc 932
>gb|BT016439.1| Zea mays clone Contig272 mRNA sequence Length = 1566 Score = 85.7 bits (43), Expect = 1e-13 Identities = 97/115 (84%) Strand = Plus / Minus Query: 418 agcatgttcttgaaccagtaggccgagtcctttgggtaccgcttgagggtggtgaagtcg 477 ||||||| | |||||||||||||||| |||| |||| || | ||| ||| ||||||| Sbjct: 1350 agcatgtccctgaaccagtaggccgacgccttcgggtggcgttcgagcgtgttgaagtcc 1291 Query: 478 acgtacacgatgccgaacttggaggtgtagcccgacagccactcgaagttgtcga 532 ||||| ||||||||||||||||| | ||| || | |||||||||||||||||||| Sbjct: 1290 acgtagacgatgccgaacttggacgagtaccctgccagccactcgaagttgtcga 1236
>gb|BT009232.1| Triticum aestivum clone wle1n.pk0102.g9:fis, full insert mRNA sequence Length = 1023 Score = 85.7 bits (43), Expect = 1e-13 Identities = 58/63 (92%) Strand = Plus / Minus Query: 470 tgaagtcgacgtacacgatgccgaacttggaggtgtagcccgacagccactcgaagttgt 529 ||||||||||||| ||||||||||||||||||| |||||| || | |||||||||||||| Sbjct: 815 tgaagtcgacgtagacgatgccgaacttggaggagtagccggagatccactcgaagttgt 756 Query: 530 cga 532 ||| Sbjct: 755 cga 753
>gb|AY109400.1| Zea mays CL1052_1 mRNA sequence Length = 2031 Score = 85.7 bits (43), Expect = 1e-13 Identities = 97/115 (84%) Strand = Plus / Minus Query: 418 agcatgttcttgaaccagtaggccgagtcctttgggtaccgcttgagggtggtgaagtcg 477 ||||||| | |||||||||||||||| |||| |||| || | ||| ||| ||||||| Sbjct: 1347 agcatgtccctgaaccagtaggccgacgccttcgggtggcgttcgagcgtgttgaagtcc 1288 Query: 478 acgtacacgatgccgaacttggaggtgtagcccgacagccactcgaagttgtcga 532 ||||| ||||||||||||||||| | ||| || | |||||||||||||||||||| Sbjct: 1287 acgtagacgatgccgaacttggacgagtaccctgccagccactcgaagttgtcga 1233
>gb|AY110303.1| Zea mays CL26208_1 mRNA sequence Length = 592 Score = 69.9 bits (35), Expect = 8e-09 Identities = 56/63 (88%) Strand = Plus / Plus Query: 470 tgaagtcgacgtacacgatgccgaacttggaggtgtagcccgacagccactcgaagttgt 529 ||||||||||||| ||||| || |||||||| ||||| || ||| ||||||||||||||| Sbjct: 218 tgaagtcgacgtagacgattccaaacttggacgtgtaacctgactgccactcgaagttgt 277 Query: 530 cga 532 ||| Sbjct: 278 cga 280
>gb|L41869.1|BLYBGQ6 Hordeum vulgare L. beta-glucosidase (BGQ60) gene, complete cds Length = 4152 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 418 agcatgttcttgaaccagtaggccgagtcctttgggtaccgcttgagggtggtgaagtcg 477 ||||||||||||||||| |||| |||||||| ||||||| ||| || || ||||||| Sbjct: 2691 agcatgttcttgaaccacaaggctgagtccttggggtacctcttcagagtattgaagtcc 2632 Query: 478 acgtacacgatgccgaa 494 || || ||||||||||| Sbjct: 2631 acatagacgatgccgaa 2615
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 52.0 bits (26), Expect = 0.002 Identities = 62/74 (83%) Strand = Plus / Minus Query: 418 agcatgttcttgaaccagtaggccgagtcctttgggtaccgcttgagggtggtgaagtcg 477 |||||||||||||||||| | || |||||||| ||||||| ||| || || || |||| Sbjct: 27564729 agcatgttcttgaaccagaaagctgagtccttggggtacctctttagcgtcttgtagtcc 27564670 Query: 478 acgtacacgatgcc 491 ||||| |||||||| Sbjct: 27564669 acgtagacgatgcc 27564656
>dbj|AP005184.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0047B07 Length = 157797 Score = 52.0 bits (26), Expect = 0.002 Identities = 62/74 (83%) Strand = Plus / Minus Query: 418 agcatgttcttgaaccagtaggccgagtcctttgggtaccgcttgagggtggtgaagtcg 477 |||||||||||||||||| | || |||||||| ||||||| ||| || || || |||| Sbjct: 21722 agcatgttcttgaaccagaaagctgagtccttggggtacctctttagcgtcttgtagtcc 21663 Query: 478 acgtacacgatgcc 491 ||||| |||||||| Sbjct: 21662 acgtagacgatgcc 21649
>dbj|AP005182.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0018C07 Length = 141707 Score = 52.0 bits (26), Expect = 0.002 Identities = 62/74 (83%) Strand = Plus / Minus Query: 418 agcatgttcttgaaccagtaggccgagtcctttgggtaccgcttgagggtggtgaagtcg 477 |||||||||||||||||| | || |||||||| ||||||| ||| || || || |||| Sbjct: 128700 agcatgttcttgaaccagaaagctgagtccttggggtacctctttagcgtcttgtagtcc 128641 Query: 478 acgtacacgatgcc 491 ||||| |||||||| Sbjct: 128640 acgtagacgatgcc 128627
>dbj|AK068499.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155M12, full insert sequence Length = 1897 Score = 52.0 bits (26), Expect = 0.002 Identities = 62/74 (83%) Strand = Plus / Minus Query: 418 agcatgttcttgaaccagtaggccgagtcctttgggtaccgcttgagggtggtgaagtcg 477 |||||||||||||||||| | || |||||||| ||||||| ||| || || || |||| Sbjct: 1612 agcatgttcttgaaccagaaagctgagtccttggggtacctctttagcgtcttgtagtcc 1553 Query: 478 acgtacacgatgcc 491 ||||| |||||||| Sbjct: 1552 acgtagacgatgcc 1539
>gb|AY110888.1| Zea mays CL3094_1 mRNA sequence Length = 588 Score = 50.1 bits (25), Expect = 0.007 Identities = 85/105 (80%) Strand = Plus / Plus Query: 428 tgaaccagtaggccgagtcctttgggtaccgcttgagggtggtgaagtcgacgtacacga 487 |||||||||| |||||| ||| ||||| ||| ||| || ||||||||||||| |||| Sbjct: 185 tgaaccagtacgccgagctcttggggtagcgccggagcgtcctgaagtcgacgtagacga 244 Query: 488 tgccgaacttggaggtgtagcccgacagccactcgaagttgtcga 532 ||||||| ||| ||||| ||| | ||||||||||||||||| Sbjct: 245 ggccgaaccgggacgtgtaccccagcttccactcgaagttgtcga 289
>gb|CP000047.1| Bacillus thuringiensis serovar konkukian str. 97-27 plasmid pBT9727, complete sequence Length = 77112 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 290 agagcagaaccctggggctgctc 312 ||||||||||||||||||||||| Sbjct: 30593 agagcagaaccctggggctgctc 30571
>ref|NM_117178.2| Arabidopsis thaliana transcription factor AT4G11080 mRNA, complete cds Length = 1372 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 116 caggatgttcttccaacacactctt 140 ||||||||||||| ||||||||||| Sbjct: 1186 caggatgttcttctaacacactctt 1162
>gb|AY133687.1| Arabidopsis thaliana clone C103117 putative 98b protein (At4g11080) mRNA, complete cds Length = 1372 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 116 caggatgttcttccaacacactctt 140 ||||||||||||| ||||||||||| Sbjct: 1186 caggatgttcttctaacacactctt 1162
>emb|AL161531.2|ATCHRIV31 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 31 Length = 198301 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 116 caggatgttcttccaacacactctt 140 ||||||||||||| ||||||||||| Sbjct: 5385 caggatgttcttctaacacactctt 5409
>emb|AL049876.1|ATT22B4 Arabidopsis thaliana DNA chromosome 4, BAC clone T22B4 (ESSA project) Length = 108598 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 116 caggatgttcttccaacacactctt 140 ||||||||||||| ||||||||||| Sbjct: 32918 caggatgttcttctaacacactctt 32942
>gb|AF080120.1|F2P3 Arabidopsis thaliana BAC F2P3 Length = 74406 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 116 caggatgttcttccaacacactctt 140 ||||||||||||| ||||||||||| Sbjct: 60436 caggatgttcttctaacacactctt 60412
>gb|AF402959.1| Oryza sativa chromosome 4 clones V17 and 214, genomic sequence Length = 64224 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 gttcttgaaccagtaggccg 442 |||||||||||||||||||| Sbjct: 63085 gttcttgaaccagtaggccg 63066
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 308 tgctcgaggtggccgaaccagccg 331 ||||||||||||||||||| |||| Sbjct: 1582064 tgctcgaggtggccgaaccggccg 1582041
>ref|NM_193731.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1389 Score = 40.1 bits (20), Expect = 7.2 Identities = 56/68 (82%) Strand = Plus / Minus Query: 428 tgaaccagtaggccgagtcctttgggtaccgcttgagggtggtgaagtcgacgtacacga 487 |||||||||||||||| ||| ||||||| | ||||||| |||| || |||||||| | Sbjct: 1363 tgaaccagtaggccgacatcttggggtacctcctgagggtcctgaaatccacgtacacca 1304 Query: 488 tgccgaac 495 ||||||| Sbjct: 1303 ggccgaac 1296
>gb|BC077592.1| Xenopus laevis MGC83955 protein, mRNA (cDNA clone MGC:83955 IMAGE:6862339), complete cds Length = 2402 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 413 cctgcagcatgttcttgaac 432 |||||||||||||||||||| Sbjct: 1089 cctgcagcatgttcttgaac 1070
>emb|AL670729.19| Human DNA sequence from clone RP11-245P10 on chromosome 1 Contains the 3' end of the OBSCN gene for obscurin cytoskeletal calmodulin and titin-interacting RhoGEF protein, a novel protein, the TRIM11 gene for tripartite motif-containing 11 protein, the 5' end of a novel transcript, the 3' end of the TRIM17 gene for tripartite motif-containing 17 protein and three CpG islands, complete sequence Length = 62164 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 gaaccctggggctgctcgag 315 |||||||||||||||||||| Sbjct: 33169 gaaccctggggctgctcgag 33150
>ref|XM_775885.1| PREDICTED: Strongylocentrotus purpuratus similar to anaphase-promoting complex subunit 4 (LOC575488), mRNA Length = 2169 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 aatggaaaataaactcacca 233 |||||||||||||||||||| Sbjct: 897 aatggaaaataaactcacca 916
>gb|AE008842.1| Salmonella typhimurium LT2, section 146 of 220 of the complete genome Length = 22204 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 accagccgccaggttgccgc 343 |||||||||||||||||||| Sbjct: 11214 accagccgccaggttgccgc 11195
>emb|BX927130.13| Zebrafish DNA sequence from clone DKEY-27N6 in linkage group 20 Contains seven novel genes and two CpG islands, complete sequence Length = 186518 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 agacccttcaggatgttctt 127 |||||||||||||||||||| Sbjct: 134584 agacccttcaggatgttctt 134603
>emb|BX649557.8| Zebrafish DNA sequence from clone DKEYP-61G11 in linkage group 3, complete sequence Length = 163934 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 agacccttcaggatgttctt 127 |||||||||||||||||||| Sbjct: 29850 agacccttcaggatgttctt 29831
>gb|AC113406.2| Homo sapiens chromosome 5 clone RP11-471O19, complete sequence Length = 147183 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 tgtgaaactgagctacagga 105 |||||||||||||||||||| Sbjct: 86720 tgtgaaactgagctacagga 86739
>gb|AC171007.3| Gallus gallus BAC clone CH261-166I11 from chromosome ul, complete sequence Length = 223327 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 agacccttcaggatgttctt 127 |||||||||||||||||||| Sbjct: 91650 agacccttcaggatgttctt 91669
>gb|AC020982.6| Homo sapiens chromosome 5 clone RP1-255M24, complete sequence Length = 137703 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 tgtgaaactgagctacagga 105 |||||||||||||||||||| Sbjct: 68359 tgtgaaactgagctacagga 68340
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.2 Identities = 56/68 (82%) Strand = Plus / Minus Query: 428 tgaaccagtaggccgagtcctttgggtaccgcttgagggtggtgaagtcgacgtacacga 487 |||||||||||||||| ||| ||||||| | ||||||| |||| || |||||||| | Sbjct: 17760779 tgaaccagtaggccgacatcttggggtacctcctgagggtcctgaaatccacgtacacca 17760720 Query: 488 tgccgaac 495 ||||||| Sbjct: 17760719 ggccgaac 17760712
>gb|AE004596.1| Pseudomonas aeruginosa PAO1, section 157 of 529 of the complete genome Length = 11958 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 cagaccagcagggagagcag 296 |||||||||||||||||||| Sbjct: 5851 cagaccagcagggagagcag 5870
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Length = 4585229 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 accagccgccaggttgccgc 343 |||||||||||||||||||| Sbjct: 3067014 accagccgccaggttgccgc 3066995
>dbj|AP003217.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0094H06 Length = 147245 Score = 40.1 bits (20), Expect = 7.2 Identities = 56/68 (82%) Strand = Plus / Minus Query: 428 tgaaccagtaggccgagtcctttgggtaccgcttgagggtggtgaagtcgacgtacacga 487 |||||||||||||||| ||| ||||||| | ||||||| |||| || |||||||| | Sbjct: 142314 tgaaccagtaggccgacatcttggggtacctcctgagggtcctgaaatccacgtacacca 142255 Query: 488 tgccgaac 495 ||||||| Sbjct: 142254 ggccgaac 142247
>dbj|AP003435.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0455H03 Length = 175947 Score = 40.1 bits (20), Expect = 7.2 Identities = 56/68 (82%) Strand = Plus / Minus Query: 428 tgaaccagtaggccgagtcctttgggtaccgcttgagggtggtgaagtcgacgtacacga 487 |||||||||||||||| ||| ||||||| | ||||||| |||| || |||||||| | Sbjct: 7901 tgaaccagtaggccgacatcttggggtacctcctgagggtcctgaaatccacgtacacca 7842 Query: 488 tgccgaac 495 ||||||| Sbjct: 7841 ggccgaac 7834
>emb|BX649622.7| Zebrafish DNA sequence from clone CH211-128B10 in linkage group 18, complete sequence Length = 180248 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 agacccttcaggatgttctt 127 |||||||||||||||||||| Sbjct: 47165 agacccttcaggatgttctt 47146
>emb|AL773512.6| Mouse DNA sequence from clone RP23-454N6 on chromosome 2, complete sequence Length = 159731 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 aggatgttcttccaacacac 136 |||||||||||||||||||| Sbjct: 23061 aggatgttcttccaacacac 23042
>dbj|AK069177.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023006J10, full insert sequence Length = 1833 Score = 40.1 bits (20), Expect = 7.2 Identities = 56/68 (82%) Strand = Plus / Minus Query: 428 tgaaccagtaggccgagtcctttgggtaccgcttgagggtggtgaagtcgacgtacacga 487 |||||||||||||||| ||| ||||||| | ||||||| |||| || |||||||| | Sbjct: 1684 tgaaccagtaggccgacatcttggggtacctcctgagggtcctgaaatccacgtacacca 1625 Query: 488 tgccgaac 495 ||||||| Sbjct: 1624 ggccgaac 1617
>dbj|AK060988.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-C08, full insert sequence Length = 1113 Score = 40.1 bits (20), Expect = 7.2 Identities = 56/68 (82%) Strand = Plus / Minus Query: 428 tgaaccagtaggccgagtcctttgggtaccgcttgagggtggtgaagtcgacgtacacga 487 |||||||||||||||| ||| ||||||| | ||||||| |||| || |||||||| | Sbjct: 983 tgaaccagtaggccgacatcttggggtacctcctgagggtcctgaaatccacgtacacca 924 Query: 488 tgccgaac 495 ||||||| Sbjct: 923 ggccgaac 916
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome Length = 4755700 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 accagccgccaggttgccgc 343 |||||||||||||||||||| Sbjct: 3217146 accagccgccaggttgccgc 3217127
>emb|AL122020.5|CNS01DSV Human chromosome 14 DNA sequence BAC C-3035D6 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 149904 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 cctggggctgctcgaggtgg 319 |||||||||||||||||||| Sbjct: 56926 cctggggctgctcgaggtgg 56945
>emb|AL159191.4|CNS01RGS Human chromosome 14 DNA sequence BAC C-2148L10 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 120689 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 cctggggctgctcgaggtgg 319 |||||||||||||||||||| Sbjct: 4054 cctggggctgctcgaggtgg 4035
>emb|AL606755.7| Mouse DNA sequence from clone RP23-112E4 on chromosome 3, complete sequence Length = 201990 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 accaatggaaaataaactca 230 |||||||||||||||||||| Sbjct: 132884 accaatggaaaataaactca 132903 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,605,137 Number of Sequences: 3902068 Number of extensions: 3605137 Number of successful extensions: 64137 Number of sequences better than 10.0: 56 Number of HSP's better than 10.0 without gapping: 54 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 63913 Number of HSP's gapped (non-prelim): 225 length of query: 532 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 509 effective length of database: 17,143,297,704 effective search space: 8725938531336 effective search space used: 8725938531336 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)