>ref|XM_467767.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2018

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                   
Query: 174  atcatcgatatgctggcgctccagcaaaggaatagagtgaggaaaccggcncacc 228
            |||||||||||||||| || |||||||||||||| || ||||| |||||| ||||
Sbjct: 1586 atcatcgatatgctggtgcaccagcaaaggaatacagggaggagaccggcgcacc 1532

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                       
Query: 174      atcatcgatatgctggcgctccagcaaaggaatagagtgaggaaaccggcncacc 228
                |||||||||||||||| || |||||||||||||| || ||||| |||||| ||||
Sbjct: 31317138 atcatcgatatgctggtgcaccagcaaaggaatacagggaggagaccggcgcacc 31317084

>dbj|AP004114.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1118_G04
          Length = 134464

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                    
Query: 174   atcatcgatatgctggcgctccagcaaaggaatagagtgaggaaaccggcncacc 228
             |||||||||||||||| || |||||||||||||| || ||||| |||||| ||||
Sbjct: 87006 atcatcgatatgctggtgcaccagcaaaggaatacagggaggagaccggcgcacc 86952

>dbj|AK103517.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033131H10, full
            insert sequence
          Length = 2019

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                   
Query: 174  atcatcgatatgctggcgctccagcaaaggaatagagtgaggaaaccggcncacc 228
            |||||||||||||||| || |||||||||||||| || ||||| |||||| ||||
Sbjct: 1587 atcatcgatatgctggtgcaccagcaaaggaatacagggaggagaccggcgcacc 1533

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                                
Query: 173     aatcatcgatatgctggcgctccagcaaaggaatagagtgaggaaaccg 221
               ||||||||||| |||||||| |||| |||||||||||| || |||||||
Sbjct: 6607432 aatcatcgatacgctggcgcgccaggaaaggaatagagagacgaaaccg 6607480

>dbj|AP003569.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0425F05
          Length = 162858

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                              
Query: 173   aatcatcgatatgctggcgctccagcaaaggaatagagtgaggaaaccg 221
             ||||||||||| |||||||| |||| |||||||||||| || |||||||
Sbjct: 41558 aatcatcgatacgctggcgcgccaggaaaggaatagagagacgaaaccg 41606

>dbj|AP003513.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0690H04
          Length = 137319

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                               
Query: 173    aatcatcgatatgctggcgctccagcaaaggaatagagtgaggaaaccg 221
              ||||||||||| |||||||| |||| |||||||||||| || |||||||
Sbjct: 123808 aatcatcgatacgctggcgcgccaggaaaggaatagagagacgaaaccg 123856

>dbj|AK104849.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-A01, full
           insert sequence
          Length = 1063

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                            
Query: 173 aatcatcgatatgctggcgctccagcaaaggaatagagtgaggaaaccg 221
           ||||||||||| |||||||| |||| |||||||||||| || |||||||
Sbjct: 816 aatcatcgatacgctggcgcgccaggaaaggaatagagagacgaaaccg 768

>dbj|AK073517.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033040I03, full
            insert sequence
          Length = 2636

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                             
Query: 173  aatcatcgatatgctggcgctccagcaaaggaatagagtgaggaaaccg 221
            ||||||||||| |||||||| |||| |||||||||||| || |||||||
Sbjct: 2374 aatcatcgatacgctggcgcgccaggaaaggaatagagagacgaaaccg 2326

>dbj|AK066970.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089B21, full
            insert sequence
          Length = 2977

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                             
Query: 173  aatcatcgatatgctggcgctccagcaaaggaatagagtgaggaaaccg 221
            ||||||||||| |||||||| |||| |||||||||||| || |||||||
Sbjct: 2326 aatcatcgatacgctggcgcgccaggaaaggaatagagagacgaaaccg 2278

>gb|BT016250.1| Zea mays clone Contig83 mRNA sequence
          Length = 1277

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 194  ccagcaaaggaatagagtgaggaaaccggcncacc 228
            |||| ||||||||||||||| ||||||||| ||||
Sbjct: 1061 ccagaaaaggaatagagtgacgaaaccggcgcacc 1027



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 269 gtttcagcataagcagggtt 288
           ||||||||||||||||||||
Sbjct: 989 gtttcagcataagcagggtt 970

>gb|AY108785.1| Zea mays PCO127498 mRNA sequence
          Length = 802

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 194 ccagcaaaggaatagagtgaggaaaccggc 223
           |||| ||||||||||||||| |||||||||
Sbjct: 679 ccagaaaaggaatagagtgacgaaaccggc 650



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 269 gtttcagcataagcagggtt 288
           ||||||||||||||||||||
Sbjct: 607 gtttcagcataagcagggtt 588

>gb|AY107779.1| Zea mays PCO127499 mRNA sequence
          Length = 1395

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 269  gtttcagcataagcagggttgg 290
            ||||||||||||||||||||||
Sbjct: 1076 gtttcagcataagcagggttgg 1055

>emb|AL354891.11| Human DNA sequence from clone RP11-44I7 on chromosome 13 Contains part
             of the gene for a novel protein (ortholog of rat putative
             four repeat ion channel), complete sequence
          Length = 103706

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 84    ctgctatagttttaaccaaaa 104
             |||||||||||||||||||||
Sbjct: 63923 ctgctatagttttaaccaaaa 63943

>emb|AJ634142.1| Lychnis chalcedonica partial rpd2 gene for RNA polymerase IV, exon
           6, clone 619
          Length = 981

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 97  aaccaaaagtaaacataagac 117
           |||||||||||||||||||||
Sbjct: 577 aaccaaaagtaaacataagac 557

>gb|BC063841.1| Homo sapiens ubiquilin 4, mRNA (cDNA clone MGC:74959 IMAGE:6183942),
            complete cds
          Length = 3545

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 98   accaaaagtaaacataagac 117
            ||||||||||||||||||||
Sbjct: 2239 accaaaagtaaacataagac 2220

>gb|BC006410.1| Homo sapiens ubiquilin 4, mRNA (cDNA clone IMAGE:2988342), complete
           cds
          Length = 1948

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 98  accaaaagtaaacataagac 117
           ||||||||||||||||||||
Sbjct: 614 accaaaagtaaacataagac 595

>emb|AL355388.30| Human DNA sequence from clone RP11-336K24 on chromosome 1 Contains the 5'
              end of the RIT1 gene for Ras-like without CAAX 1, the gene
              for a novel protein (KIAA0907), the ARHGEF2 gene for
              rho/rac guanine nucleotide exchange factor (GEF) 2, four
              novel genes, the SSR2 gene for signal sequence receptor
              beta (translocon-associated protein beta), the C1orf6 gene
              for chromosome 1 open reading frame 6, the gene for
              mitogen-activated protein-binding protein-interacting
              protein (MAPBPIP), the RAB25 gene for RAB25 (member RAS
              oncogene family), the 5' end of the LMNA gene for lamin A/C
              and three CpG islands, complete sequence
          Length = 205463

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 98     accaaaagtaaacataagac 117
              ||||||||||||||||||||
Sbjct: 130249 accaaaagtaaacataagac 130268

>gb|AC116158.5| Homo sapiens chromosome , clone RP11-102L12, complete sequence
          Length = 159236

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 93    ttttaaccaaaagtaaacat 112
             ||||||||||||||||||||
Sbjct: 99556 ttttaaccaaaagtaaacat 99575

>gb|AC021059.25| Homo sapiens 3 BAC RP11-464E15 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 164076

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 98    accaaaagtaaacataagac 117
             ||||||||||||||||||||
Sbjct: 16754 accaaaagtaaacataagac 16773

>emb|CR625574.1| full-length cDNA clone CS0DD008YI17 of Neuroblastoma Cot
           50-normalized of Homo sapiens (human)
          Length = 1600

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 98  accaaaagtaaacataagac 117
           ||||||||||||||||||||
Sbjct: 359 accaaaagtaaacataagac 340

>emb|CR617278.1| full-length cDNA clone CS0DL008YG20 of B cells (Ramos cell line)
           Cot 25-normalized of Homo sapiens (human)
          Length = 1456

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 98  accaaaagtaaacataagac 117
           ||||||||||||||||||||
Sbjct: 236 accaaaagtaaacataagac 217

>gb|AC109631.4| Homo sapiens chromosome , clone RP11-9J12, complete sequence
          Length = 172321

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 93   ttttaaccaaaagtaaacat 112
            ||||||||||||||||||||
Sbjct: 1039 ttttaaccaaaagtaaacat 1020

>gb|AF188240.1|AF188240 Homo sapiens A1U mRNA, complete cds
          Length = 2890

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 98   accaaaagtaaacataagac 117
            ||||||||||||||||||||
Sbjct: 2493 accaaaagtaaacataagac 2474

>ref|NM_020131.3| Homo sapiens ubiquilin 4 (UBQLN4), mRNA
          Length = 3545

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 98   accaaaagtaaacataagac 117
            ||||||||||||||||||||
Sbjct: 2239 accaaaagtaaacataagac 2220

>dbj|AK098368.1| Homo sapiens cDNA FLJ25502 fis, clone CBR04190, highly similar to
            Homo sapiens A1U mRNA
          Length = 2451

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 98   accaaaagtaaacataagac 117
            ||||||||||||||||||||
Sbjct: 1184 accaaaagtaaacataagac 1165

>gb|AF113544.1|AF113544 Homo sapiens HRIHFB2157-like protein mRNA, partial cds
          Length = 3014

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 98   accaaaagtaaacataagac 117
            ||||||||||||||||||||
Sbjct: 1744 accaaaagtaaacataagac 1725

>gb|BC018403.2| Homo sapiens ubiquilin 4, mRNA (cDNA clone MGC:16849 IMAGE:4214386),
            complete cds
          Length = 3519

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 98   accaaaagtaaacataagac 117
            ||||||||||||||||||||
Sbjct: 2227 accaaaagtaaacataagac 2208

>gb|AC136517.3| Mus musculus BAC clone RP23-259O15 from 1, complete sequence
          Length = 220632

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 94     tttaaccaaaagtaaacataagac 117
              |||| |||||||||||||||||||
Sbjct: 162103 tttatccaaaagtaaacataagac 162080

>dbj|AB209566.1| Homo sapiens mRNA for ataxin-1 ubiquitin-like interacting protein
            variant protein
          Length = 3479

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 98   accaaaagtaaacataagac 117
            ||||||||||||||||||||
Sbjct: 2212 accaaaagtaaacataagac 2193

>gb|L25107.1|HUMLISA Human LIS mRNA
          Length = 1849

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 98   accaaaagtaaacataagac 117
            ||||||||||||||||||||
Sbjct: 1676 accaaaagtaaacataagac 1695


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,902,144
Number of Sequences: 3902068
Number of extensions: 1902144
Number of successful extensions: 32066
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32017
Number of HSP's gapped (non-prelim): 49
length of query: 336
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 314
effective length of database: 17,147,199,772
effective search space: 5384220728408
effective search space used: 5384220728408
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)