ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags17c24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clon... 143 7e-31
2dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clon... 143 7e-31
3gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome... 121 3e-24
4gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P1... 121 3e-24
5dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 121 3e-24
6gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 121 3e-24
7gb|BT009571.1| Triticum aestivum clone wre1n.pk0021.e3:fis, full... 64 5e-07
8dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
9gb|AY107519.1| Zea mays PCO078033 mRNA sequence 52 0.002
10gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome... 48 0.032
11ref|XM_416865.1| PREDICTED: Gallus gallus similar to short statu... 46 0.13
12ref|XM_477999.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.51
13ref|XM_471443.1| Oryza sativa (japonica cultivar-group), predic... 42 2.0
14gb|AC025277.10| Homo sapiens chromosome 16 clone CTD-3229J4, com... 42 2.0
15gb|AC068473.19| Homo sapiens chromosome 18, clone RP11-567M16, c... 42 2.0
16gb|AC068910.45| Mus musculus strain C57BL/6J chromosome 9 clone ... 42 2.0
17gb|AC096785.29| Mus musculus strain C57BL/6J clone rp23-382i2 ma... 42 2.0
18emb|Z50860.1|HSN76A1 Human DNA sequence from clone LL22NC03-76A1... 42 2.0
19emb|AL731611.2|OSJN00253 Oryza sativa genomic DNA, chromosome 4,... 42 2.0
20dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
21gb|AF546189.1| Contiguous genomic DNA sequence comprising the 19... 42 2.0
22dbj|AK105688.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.0
23dbj|AK065632.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.0
24emb|CT030124.12| Mouse DNA sequence from clone RP23-100B15 on ch... 42 2.0
25gb|AC074314.29| 433m13, complete sequence 42 2.0
26emb|CR786572.20| Zebrafish DNA sequence from clone DKEY-258F14 i... 40 7.9
27emb|Z92844.3|HS435C23 Human DNA sequence from clone RP3-435C23 o... 40 7.9
28gb|AC012588.14| Homo sapiens chromosome 18, clone RP11-17A19, co... 40 7.9
29gb|AC090206.7| Homo sapiens chromosome 18, clone RP11-349H17, co... 40 7.9
30gb|AC108935.5| Homo sapiens BAC clone RP11-503L19 from 4, comple... 40 7.9
31gb|AC022535.6| Homo sapiens chromosome 10 clone RP11-34C15, comp... 40 7.9
32dbj|AK163573.1| Mus musculus adult male corpora quadrigemina cDN... 40 7.9
33emb|BX682555.6| Zebrafish DNA sequence from clone DKEY-217L10 in... 40 7.9
34gb|AC152165.2| Mus musculus BAC clone RP24-159A20 from chromosom... 40 7.9
35dbj|AK045822.1| Mus musculus adult male corpora quadrigemina cDN... 40 7.9
36gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chr... 40 7.9
37gb|BC049666.1| Mus musculus RIKEN cDNA 6330512M04 gene, mRNA (cD... 40 7.9
38dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
39gb|AC130462.3| Homo sapiens chromosome 16 clone CTA-67A1, comple... 40 7.9
40gb|AY177404.1| Secale cereale O-methyltransferase mRNA, complete... 40 7.9
41gb|AC034099.16| Mus Musculus Strain C57BL6/J Chromosome 7 BAC, R... 40 7.9
42dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete ge... 40 7.9
43dbj|AP003930.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
44dbj|AP003850.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
45gb|AY110678.1| Zea mays CL33606_1 mRNA sequence 40 7.9
46emb|CR388184.33| Zebrafish DNA sequence from clone CH211-261O3 i... 40 7.9
47ref|NM_177265.2| Mus musculus RIKEN cDNA 6330512M04 gene (633051... 40 7.9
48dbj|AP006364.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 7.9
49emb|AL603651.14| Mouse DNA sequence from clone RP23-398J2 on chr... 40 7.9 
>dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-C11, full
            insert sequence
          Length = 1362

 Score =  143 bits (72), Expect = 7e-31
 Identities = 180/216 (83%)
 Strand = Plus / Minus

                                                                        
Query: 366  accatcatgagcatatccatcaggagttgggcttcaaacattactggccctaaggaaggt 425
            |||| ||| |||||||||||||  || |||||||||||||||||||| ||||  ||||||
Sbjct: 1033 accaacatcagcatatccatcatcagctgggcttcaaacattactggtcctagtgaaggt 974

                                                                        
Query: 426  ccaaccacaatctctatgattattacctttcccccctcctcccgcggaggaatggccttt 485
            |||||||  ||||||||||| || ||||| || |||||||| || |  ||||||||||||
Sbjct: 973  ccaaccagtatctctatgatgatgaccttccctccctcctctcgtgatggaatggccttt 914

                                                                        
Query: 486  ctgcactgggctaggattttcacgcaatcctcatcactccaaaagtgtagcacaagcttg 545
            |||||||| |  | ||| ||||||||||| ||||| |||||   ||| |  |||||||||
Sbjct: 913  ctgcactgagtcaagatcttcacgcaatcatcatcgctccagtggtgcaatacaagcttg 854

                                                
Query: 546  agcatcaccacttgagatggtgggacggtgtggaac 581
            ||||||||  ||||||  ||||| ||||||||||||
Sbjct: 853  agcatcacggcttgagccggtggcacggtgtggaac 818
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>dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H05, full
            insert sequence
          Length = 1264

 Score =  143 bits (72), Expect = 7e-31
 Identities = 180/216 (83%)
 Strand = Plus / Minus

                                                                        
Query: 366  accatcatgagcatatccatcaggagttgggcttcaaacattactggccctaaggaaggt 425
            |||| ||| |||||||||||||  || |||||||||||||||||||| ||||  ||||||
Sbjct: 1038 accaacatcagcatatccatcatcagctgggcttcaaacattactggtcctagtgaaggt 979

                                                                        
Query: 426  ccaaccacaatctctatgattattacctttcccccctcctcccgcggaggaatggccttt 485
            |||||||  ||||||||||| || ||||| || |||||||| || |  ||||||||||||
Sbjct: 978  ccaaccagtatctctatgatgatgaccttccctccctcctctcgtgatggaatggccttt 919

                                                                        
Query: 486  ctgcactgggctaggattttcacgcaatcctcatcactccaaaagtgtagcacaagcttg 545
            |||||||| |  | ||| ||||||||||| ||||| |||||   ||| |  |||||||||
Sbjct: 918  ctgcactgagtcaagatcttcacgcaatcatcatcgctccagtggtgcaatacaagcttg 859

                                                
Query: 546  agcatcaccacttgagatggtgggacggtgtggaac 581
            ||||||||  ||||||  ||||| ||||||||||||
Sbjct: 858  agcatcacggcttgagccggtggcacggtgtggaac 823
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>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0005P21,
              complete sequence
          Length = 147381

 Score =  121 bits (61), Expect = 3e-24
 Identities = 136/161 (84%)
 Strand = Plus / Minus

                                                                          
Query: 366    accatcatgagcatatccatcaggagttgggcttcaaacattactggccctaaggaaggt 425
              |||| ||| |||||||||||||  || |||||||||||||||||||| ||||  ||||||
Sbjct: 123040 accaacatcagcatatccatcatcagctgggcttcaaacattactggtcctagtgaaggt 122981

                                                                          
Query: 426    ccaaccacaatctctatgattattacctttcccccctcctcccgcggaggaatggccttt 485
              |||||||  ||||||||||| || ||||| || |||||||| || |  ||||||||||||
Sbjct: 122980 ccaaccagtatctctatgatgatgaccttccctccctcctctcgtgatggaatggccttt 122921

                                                       
Query: 486    ctgcactgggctaggattttcacgcaatcctcatcactcca 526
              |||||||| |  | ||| ||||||||||| ||||| |||||
Sbjct: 122920 ctgcactgagtcaagatcttcacgcaatcatcatcgctcca 122880



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 136/167 (81%)
 Strand = Plus / Minus

                                                                         
Query: 345   cgttgaccccctctcgtgttcaccatcatgagcatatccatcaggagttgggcttcaaac 404
             |||||||  ||||| || ||||||||||||||||| ||||||| ||| || ||||| |||
Sbjct: 64375 cgttgacgacctctagtattcaccatcatgagcatgtccatcatgagctgcgcttcgaac 64316

                                                                         
Query: 405   attactggccctaaggaaggtccaaccacaatctctatgattattacctttcccccctcc 464
             ||||| ||||| || || ||| ||||||  || |||||||  || | ||| || ||||||
Sbjct: 64315 attacaggccccaaagatggttcaaccaagatatctatgacaatcaacttcccgccctcc 64256

                                                            
Query: 465   tcccgcggaggaatggcctttctgcactgggctaggattttcacgca 511
             |  || | |||||| |||||| ||||||| |||||||| ||||||||
Sbjct: 64255 tttcgtgaaggaatagcctttttgcactgagctaggatcttcacgca 64209



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                      
Query: 542    cttgagcatcaccacttgagatggtgggacggtgtggaac 581
              ||||||||||||  ||||||  ||||| ||||||||||||
Sbjct: 119697 cttgagcatcacggcttgagccggtggcacggtgtggaac 119658
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>gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P15, complete sequence
          Length = 128418

 Score =  121 bits (61), Expect = 3e-24
 Identities = 136/161 (84%)
 Strand = Plus / Minus

                                                                        
Query: 366  accatcatgagcatatccatcaggagttgggcttcaaacattactggccctaaggaaggt 425
            |||| ||| |||||||||||||  || |||||||||||||||||||| ||||  ||||||
Sbjct: 8789 accaacatcagcatatccatcatcagctgggcttcaaacattactggtcctagtgaaggt 8730

                                                                        
Query: 426  ccaaccacaatctctatgattattacctttcccccctcctcccgcggaggaatggccttt 485
            |||||||  ||||||||||| || ||||| || |||||||| || |  ||||||||||||
Sbjct: 8729 ccaaccagtatctctatgatgatgaccttccctccctcctctcgtgatggaatggccttt 8670

                                                     
Query: 486  ctgcactgggctaggattttcacgcaatcctcatcactcca 526
            |||||||| |  | ||| ||||||||||| ||||| |||||
Sbjct: 8669 ctgcactgagtcaagatcttcacgcaatcatcatcgctcca 8629



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                              
Query: 495   gctaggattttcacgcaatcctcatcactccaa 527
             ||||||||||||||||||||||  |||||||||
Sbjct: 62050 gctaggattttcacgcaatcctggtcactccaa 62018



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 542  cttgagcatcaccacttgagatggtgggacggtgtggaac 581
            ||||||||||||  ||||||  ||||| ||||||||||||
Sbjct: 5446 cttgagcatcacggcttgagccggtggcacggtgtggaac 5407
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  121 bits (61), Expect = 3e-24
 Identities = 136/161 (84%)
 Strand = Plus / Plus

                                                                            
Query: 366      accatcatgagcatatccatcaggagttgggcttcaaacattactggccctaaggaaggt 425
                |||| ||| |||||||||||||  || |||||||||||||||||||| ||||  ||||||
Sbjct: 11490748 accaacatcagcatatccatcatcagctgggcttcaaacattactggtcctagtgaaggt 11490807

                                                                            
Query: 426      ccaaccacaatctctatgattattacctttcccccctcctcccgcggaggaatggccttt 485
                |||||||  ||||||||||| || ||||| || |||||||| || |  ||||||||||||
Sbjct: 11490808 ccaaccagtatctctatgatgatgaccttccctccctcctctcgtgatggaatggccttt 11490867

                                                         
Query: 486      ctgcactgggctaggattttcacgcaatcctcatcactcca 526
                |||||||| |  | ||| ||||||||||| ||||| |||||
Sbjct: 11490868 ctgcactgagtcaagatcttcacgcaatcatcatcgctcca 11490908



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 136/167 (81%)
 Strand = Plus / Plus

                                                                            
Query: 345      cgttgaccccctctcgtgttcaccatcatgagcatatccatcaggagttgggcttcaaac 404
                |||||||  ||||| || ||||||||||||||||| ||||||| ||| || ||||| |||
Sbjct: 11549413 cgttgacgacctctagtattcaccatcatgagcatgtccatcatgagctgcgcttcgaac 11549472

                                                                            
Query: 405      attactggccctaaggaaggtccaaccacaatctctatgattattacctttcccccctcc 464
                ||||| ||||| || || ||| ||||||  || |||||||  || | ||| || ||||||
Sbjct: 11549473 attacaggccccaaagatggttcaaccaagatatctatgacaatcaacttcccgccctcc 11549532

                                                               
Query: 465      tcccgcggaggaatggcctttctgcactgggctaggattttcacgca 511
                |  || | |||||| |||||| ||||||| |||||||| ||||||||
Sbjct: 11549533 tttcgtgaaggaatagcctttttgcactgagctaggatcttcacgca 11549579



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                                 
Query: 495      gctaggattttcacgcaatcctcatcactccaa 527
                ||||||||||||||||||||||  |||||||||
Sbjct: 11437487 gctaggattttcacgcaatcctggtcactccaa 11437519



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                        
Query: 243      tacgggtagacctcgatgactgatcgggctcccaatttcttcacaattttgtagtc 298
                ||||| |||||||| |||||  | || | |||||||||||||||||| ||||||||
Sbjct: 11294528 tacggatagacctcaatgacacaccgaggtcccaatttcttcacaatcttgtagtc 11294583



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                           
Query: 246      gggtagacctcgatgactgatcgggctcccaatttcttcacaattttgtagtcagtgaa 304
                ||||||||||| | |||   ||| ||||||| |||||||||||| ||||||||| ||||
Sbjct: 11353889 gggtagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtcactgaa 11353947



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                        
Query: 542      cttgagcatcaccacttgagatggtgggacggtgtggaac 581
                ||||||||||||  ||||||  ||||| ||||||||||||
Sbjct: 11494091 cttgagcatcacggcttgagccggtggcacggtgtggaac 11494130



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 487      tgcactgggctaggattttcacgcaatcctca 518
                |||| ||||||||||| |||||| ||||||||
Sbjct: 11352249 tgcattgggctaggatcttcacgtaatcctca 11352280
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  121 bits (61), Expect = 3e-24
 Identities = 136/161 (84%)
 Strand = Plus / Plus

                                                                            
Query: 366      accatcatgagcatatccatcaggagttgggcttcaaacattactggccctaaggaaggt 425
                |||| ||| |||||||||||||  || |||||||||||||||||||| ||||  ||||||
Sbjct: 11569937 accaacatcagcatatccatcatcagctgggcttcaaacattactggtcctagtgaaggt 11569996

                                                                            
Query: 426      ccaaccacaatctctatgattattacctttcccccctcctcccgcggaggaatggccttt 485
                |||||||  ||||||||||| || ||||| || |||||||| || |  ||||||||||||
Sbjct: 11569997 ccaaccagtatctctatgatgatgaccttccctccctcctctcgtgatggaatggccttt 11570056

                                                         
Query: 486      ctgcactgggctaggattttcacgcaatcctcatcactcca 526
                |||||||| |  | ||| ||||||||||| ||||| |||||
Sbjct: 11570057 ctgcactgagtcaagatcttcacgcaatcatcatcgctcca 11570097



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 136/167 (81%)
 Strand = Plus / Plus

                                                                            
Query: 345      cgttgaccccctctcgtgttcaccatcatgagcatatccatcaggagttgggcttcaaac 404
                |||||||  ||||| || ||||||||||||||||| ||||||| ||| || ||||| |||
Sbjct: 11628602 cgttgacgacctctagtattcaccatcatgagcatgtccatcatgagctgcgcttcgaac 11628661

                                                                            
Query: 405      attactggccctaaggaaggtccaaccacaatctctatgattattacctttcccccctcc 464
                ||||| ||||| || || ||| ||||||  || |||||||  || | ||| || ||||||
Sbjct: 11628662 attacaggccccaaagatggttcaaccaagatatctatgacaatcaacttcccgccctcc 11628721

                                                               
Query: 465      tcccgcggaggaatggcctttctgcactgggctaggattttcacgca 511
                |  || | |||||| |||||| ||||||| |||||||| ||||||||
Sbjct: 11628722 tttcgtgaaggaatagcctttttgcactgagctaggatcttcacgca 11628768



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                                 
Query: 495      gctaggattttcacgcaatcctcatcactccaa 527
                ||||||||||||||||||||||  |||||||||
Sbjct: 11516676 gctaggattttcacgcaatcctggtcactccaa 11516708



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                        
Query: 243      tacgggtagacctcgatgactgatcgggctcccaatttcttcacaattttgtagtc 298
                ||||| |||||||| |||||  | || | |||||||||||||||||| ||||||||
Sbjct: 11373717 tacggatagacctcaatgacacaccgaggtcccaatttcttcacaatcttgtagtc 11373772



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                           
Query: 246      gggtagacctcgatgactgatcgggctcccaatttcttcacaattttgtagtcagtgaa 304
                ||||||||||| | |||   ||| ||||||| |||||||||||| ||||||||| ||||
Sbjct: 11433078 gggtagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtcactgaa 11433136



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                        
Query: 542      cttgagcatcaccacttgagatggtgggacggtgtggaac 581
                ||||||||||||  ||||||  ||||| ||||||||||||
Sbjct: 11573280 cttgagcatcacggcttgagccggtggcacggtgtggaac 11573319



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 487      tgcactgggctaggattttcacgcaatcctca 518
                |||| ||||||||||| |||||| ||||||||
Sbjct: 11431438 tgcattgggctaggatcttcacgtaatcctca 11431469
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>gb|BT009571.1| Triticum aestivum clone wre1n.pk0021.e3:fis, full insert mRNA
           sequence
          Length = 770

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 62/72 (86%)
 Strand = Plus / Minus

                                                                       
Query: 509 gcaatcctcatcactccaaaagtgtagcacaagcttgagcatcaccacttgagatggtgg 568
           ||||||||| || ||||| |||||||| |||||||||||||| ||  | |||| ||||||
Sbjct: 248 gcaatcctcgtcgctccagaagtgtagaacaagcttgagcatgacggcctgagctggtgg 189

                       
Query: 569 gacggtgtggaa 580
           |||||| |||||
Sbjct: 188 gacggtatggaa 177
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>dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-E05, full
           insert sequence
          Length = 1262

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                             
Query: 501 attttcacgcaatcctcatcactccaaaagtgtagcacaagcttgagcat 550
           |||||||| |||||||| ||||||||   ||| |||||||||||||||||
Sbjct: 915 attttcacacaatcctcgtcactccagtggtgaagcacaagcttgagcat 866
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>gb|AY107519.1| Zea mays PCO078033 mRNA sequence
          Length = 1299

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 360 gtgttcaccatcatgagcatatccatcaggagttgggc 397
           |||||||||||||||||||| |||||||| || |||||
Sbjct: 991 gtgttcaccatcatgagcatgtccatcagcagctgggc 954
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>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0015P05 map C53961S, complete sequence
          Length = 175121

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                     
Query: 243   tacgggtagacctcgatgactgatcgggctcccaatttcttcacaattttgtagtc 298
             ||||| |||||||| |||||  | || | |||||||||||||||||| ||||||||
Sbjct: 80886 tacggatagacctcaatgacacaccgaggtcccaatttcttcacaatcttgtagtc 80941



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                         
Query: 246    gggtagacctcgatgactgatcgggctcccaatttcttcacaattttgtagtcagtgaa 304
              ||||||||||| | |||   ||| ||||||| |||||||||||| ||||||||| ||||
Sbjct: 140247 gggtagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtcactgaa 140305



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 487    tgcactgggctaggattttcacgcaatcctca 518
              |||| ||||||||||| |||||| ||||||||
Sbjct: 138607 tgcattgggctaggatcttcacgtaatcctca 138638
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>ref|XM_416865.1| PREDICTED: Gallus gallus similar to short stature homeobox isoform
           a; growth control factor, X-linked; pseudoautosomal
           homeobox-containing osteogenic gene (LOC418669), mRNA
          Length = 2100

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 453 tttcccccctcctcccgcggagg 475
           |||||||||||||||||||||||
Sbjct: 534 tttcccccctcctcccgcggagg 556
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>ref|XM_477999.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1083

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                         
Query: 504 ttcacgcaatcctcatcactccaaaagtgtagcacaagcttgagca 549
           |||| ||| |||||||||||||||  |||||| |||| ||||||||
Sbjct: 821 ttcatgcagtcctcatcactccaatcgtgtaggacaaacttgagca 776
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>ref|XM_471443.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1518

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 55   cattggagcacactaacatga 75
            |||||||||||||||||||||
Sbjct: 1310 cattggagcacactaacatga 1330
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>gb|AC025277.10| Homo sapiens chromosome 16 clone CTD-3229J4, complete sequence
          Length = 189032

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 197   gaaaaataagcacctccttta 217
             |||||||||||||||||||||
Sbjct: 69396 gaaaaataagcacctccttta 69416
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>gb|AC068473.19| Homo sapiens chromosome 18, clone RP11-567M16, complete sequence
          Length = 175721

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 77    aaacacatacatatgccaatataaa 101
             |||||||||||||||| ||||||||
Sbjct: 14370 aaacacatacatatgcaaatataaa 14346
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>gb|AC068910.45| Mus musculus strain C57BL/6J chromosome 9 clone rp23-9g9, complete
              sequence
          Length = 169984

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 94     aatataaagtgctttaatact 114
              |||||||||||||||||||||
Sbjct: 166964 aatataaagtgctttaatact 166944
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>gb|AC096785.29| Mus musculus strain C57BL/6J clone rp23-382i2 map 18, complete sequence
          Length = 201304

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 94    aatataaagtgctttaatact 114
             |||||||||||||||||||||
Sbjct: 64419 aatataaagtgctttaatact 64399
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>emb|Z50860.1|HSN76A1 Human DNA sequence from clone LL22NC03-76A1 on chromosome 22, complete
             sequence
          Length = 39246

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 557   ttgagatggtgggacggtgtg 577
             |||||||||||||||||||||
Sbjct: 31689 ttgagatggtgggacggtgtg 31709
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>emb|AL731611.2|OSJN00253 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072D08,
             complete sequence
          Length = 142814

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 55    cattggagcacactaacatga 75
             |||||||||||||||||||||
Sbjct: 45974 cattggagcacactaacatga 45954
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 55       cattggagcacactaacatga 75
                |||||||||||||||||||||
Sbjct: 11037319 cattggagcacactaacatga 11037299
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>gb|AF546189.1| Contiguous genomic DNA sequence comprising the 19-kDa-zein gene family
              from Zea mays, complete sequence
          Length = 116115

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 314    cttaaatagctcacaccagtg 334
              |||||||||||||||||||||
Sbjct: 109765 cttaaatagctcacaccagtg 109785
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>dbj|AK105688.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-C01, full
            insert sequence
          Length = 2002

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 55   cattggagcacactaacatga 75
            |||||||||||||||||||||
Sbjct: 1578 cattggagcacactaacatga 1598
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>dbj|AK065632.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013028E03, full
            insert sequence
          Length = 2023

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 55   cattggagcacactaacatga 75
            |||||||||||||||||||||
Sbjct: 1583 cattggagcacactaacatga 1603
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>emb|CT030124.12| Mouse DNA sequence from clone RP23-100B15 on chromosome 9, complete
             sequence
          Length = 203615

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 94    aatataaagtgctttaatact 114
             |||||||||||||||||||||
Sbjct: 38302 aatataaagtgctttaatact 38282
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>gb|AC074314.29| 433m13, complete sequence
          Length = 209644

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 94     aatataaagtgctttaatact 114
              |||||||||||||||||||||
Sbjct: 155135 aatataaagtgctttaatact 155115
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>emb|CR786572.20| Zebrafish DNA sequence from clone DKEY-258F14 in linkage group 8,
             complete sequence
          Length = 137717

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   cctttatttttacctttaaa 231
             ||||||||||||||||||||
Sbjct: 20649 cctttatttttacctttaaa 20630
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>emb|Z92844.3|HS435C23 Human DNA sequence from clone RP3-435C23 on chromosome Xp21-22,
             complete sequence
          Length = 158849

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   cctttatttttacctttaaa 231
             ||||||||||||||||||||
Sbjct: 98669 cctttatttttacctttaaa 98688
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>gb|AC012588.14| Homo sapiens chromosome 18, clone RP11-17A19, complete sequence
          Length = 148738

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 78    aacacatacatatgccaatataaa 101
             |||| |||||||||||||||||||
Sbjct: 37283 aacaaatacatatgccaatataaa 37306
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>gb|AC090206.7| Homo sapiens chromosome 18, clone RP11-349H17, complete sequence
          Length = 91609

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 78    aacacatacatatgccaatataaa 101
             |||| |||||||||||||||||||
Sbjct: 59103 aacaaatacatatgccaatataaa 59126
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>gb|AC108935.5| Homo sapiens BAC clone RP11-503L19 from 4, complete sequence
          Length = 133531

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 209   cctcctttatttttaccttt 228
             ||||||||||||||||||||
Sbjct: 58662 cctcctttatttttaccttt 58681
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>gb|AC022535.6| Homo sapiens chromosome 10 clone RP11-34C15, complete sequence
          Length = 178864

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 11     agaacaatactatataagca 30
              ||||||||||||||||||||
Sbjct: 120513 agaacaatactatataagca 120532
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>dbj|AK163573.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN
           full-length enriched library, clone:B230384C07
           product:hypothetical Interferon-induced transmembrane
           protein containing protein, full insert sequence
          Length = 1159

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 245 cgggtagacctcgatgactg 264
           ||||||||||||||||||||
Sbjct: 451 cgggtagacctcgatgactg 432
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>emb|BX682555.6| Zebrafish DNA sequence from clone DKEY-217L10 in linkage group 3,
             complete sequence
          Length = 69193

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 184   gaacattcccttagaaaaat 203
             ||||||||||||||||||||
Sbjct: 15225 gaacattcccttagaaaaat 15244
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>gb|AC152165.2| Mus musculus BAC clone RP24-159A20 from chromosome 5, complete sequence
          Length = 194519

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 70     acatgacaaacacatacata 89
              ||||||||||||||||||||
Sbjct: 172945 acatgacaaacacatacata 172964
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>dbj|AK045822.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN
           full-length enriched library, clone:B230312J21
           product:hypothetical protein, full insert sequence
          Length = 3235

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 245 cgggtagacctcgatgactg 264
           ||||||||||||||||||||
Sbjct: 450 cgggtagacctcgatgactg 431
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>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete
               sequence
          Length = 4332241

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 1       aataaatacgagaacaatactata 24
               ||||||||||| ||||||||||||
Sbjct: 2362720 aataaatacgaaaacaatactata 2362743
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>gb|BC049666.1| Mus musculus RIKEN cDNA 6330512M04 gene, mRNA (cDNA clone MGC:58491
           IMAGE:6534368), complete cds
          Length = 1184

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 245 cgggtagacctcgatgactg 264
           ||||||||||||||||||||
Sbjct: 439 cgggtagacctcgatgactg 420
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 19       actatataagcacgacaacaaact 42
                ||||||| ||||||||||||||||
Sbjct: 20042753 actatattagcacgacaacaaact 20042730
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>gb|AC130462.3| Homo sapiens chromosome 16 clone CTA-67A1, complete sequence
          Length = 191594

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 40     actacaagcacacaccattg 59
              ||||||||||||||||||||
Sbjct: 120170 actacaagcacacaccattg 120151
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>gb|AY177404.1| Secale cereale O-methyltransferase mRNA, complete cds
          Length = 1373

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 537 acaagcttgagcatcaccacttgagatggtgggacggtgtggaa 580
           |||||||||||||||||| | ||||    |||||||||||||||
Sbjct: 844 acaagcttgagcatcaccgcctgagcctttgggacggtgtggaa 801
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>gb|AC034099.16| Mus Musculus Strain C57BL6/J Chromosome 7 BAC, RP23-145I16, complete
             sequence
          Length = 229553

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 245   cgggtagacctcgatgactg 264
             ||||||||||||||||||||
Sbjct: 36179 cgggtagacctcgatgactg 36160
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>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome
          Length = 3630528

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 396     gcttcaaacattactggccctaag 419
               |||||||||||| |||||||||||
Sbjct: 1998540 gcttcaaacatttctggccctaag 1998563
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>dbj|AP003930.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OJ1657_A07
          Length = 125217

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 19   actatataagcacgacaacaaact 42
            ||||||| ||||||||||||||||
Sbjct: 7356 actatattagcacgacaacaaact 7333
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>dbj|AP003850.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1793_E11
          Length = 101342

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 19    actatataagcacgacaacaaact 42
             ||||||| ||||||||||||||||
Sbjct: 76313 actatattagcacgacaacaaact 76290
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>gb|AY110678.1| Zea mays CL33606_1 mRNA sequence
          Length = 830

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 480 gcctttctgcactgggctaggattttcacgcaatcctcatcact 523
           ||||| ||||| | ||| ||||| |||||||| |||||||||||
Sbjct: 570 gccttcctgcagttggcaaggatcttcacgcagtcctcatcact 613
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>emb|CR388184.33| Zebrafish DNA sequence from clone CH211-261O3 in linkage group 8,
              complete sequence
          Length = 180216

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 215    ttatttttacctttaaagcacaat 238
              ||||||||| ||||||||||||||
Sbjct: 106666 ttatttttaactttaaagcacaat 106689
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>ref|NM_177265.2| Mus musculus RIKEN cDNA 6330512M04 gene (6330512M04Rik), mRNA
          Length = 3235

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 245 cgggtagacctcgatgactg 264
           ||||||||||||||||||||
Sbjct: 450 cgggtagacctcgatgactg 431
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>dbj|AP006364.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT28B04, TM0170,
             complete sequence
          Length = 101172

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 141   tgaagcaactaatctttata 160
             ||||||||||||||||||||
Sbjct: 82781 tgaagcaactaatctttata 82800
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>emb|AL603651.14| Mouse DNA sequence from clone RP23-398J2 on chromosome 7, complete
              sequence
          Length = 205942

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 245    cgggtagacctcgatgactg 264
              ||||||||||||||||||||
Sbjct: 164428 cgggtagacctcgatgactg 164409


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,629,857
Number of Sequences: 3902068
Number of extensions: 5629857
Number of successful extensions: 110637
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 110354
Number of HSP's gapped (non-prelim): 282
length of query: 581
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 558
effective length of database: 17,143,297,704
effective search space: 9565960118832
effective search space used: 9565960118832
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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