| Clone Name | rbags16n21 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_190202.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 4065 Score = 325 bits (164), Expect = 1e-85 Identities = 311/360 (86%) Strand = Plus / Minus Query: 229 aacaccattctcttgcattctggaacatgcgcaaccaaggactaggaccactcttctcaa 288 ||||||||||||| ||||||||||||||||||| ||| ||||| ||||||| |||||||| Sbjct: 4060 aacaccattctctggcattctggaacatgcgcagccagggactgggaccacacttctcaa 4001 Query: 289 cctgccaatccttgggataccatgggtattgccacatcataaaggaacgctccgggtgcg 348 |||||| ||||||||||||||||| |||||||||||||| ||| ||||||| ||||| | Sbjct: 4000 gctgccattccttgggataccatggatattgccacatcatgaagcaacgctctgggtgtg 3941 Query: 349 gcatcagagcaaggtgccttccattgggggagcaaagggccgcaataccaagcggagagc 408 |||||| |||||| || ||||||| |||||||||||||| ||||| ||||| ||||||| Sbjct: 3940 gcatcatagcaagatgtcttccatcaggggagcaaagggctgcaatgccaaggggagagc 3881 Query: 409 cattagggttgaaaggatagacctctgtgacgttattagcatcatcgcagtacctcagag 468 |||| || ||||| || ||||| || || | |||||||||||| || ||||||| || || Sbjct: 3880 cattgggattgaacgggtagacttcggtaatgttattagcatcgtcacagtaccgcacag 3821 Query: 469 gggccagattagatttgacaacatcagataagacatttccatctgggaagaaggctctac 528 | ||||| ||||| || |||||| || || |||||| ||||||||||||| ||||| | Sbjct: 3820 gagccaggttagagttcacaacactagctagaacattttcatctgggaagaaagctctcc 3761 Query: 529 cttcaccatgagcactccaaatgcccaatgtagagccttccatacctttgaacattatag 588 | ||||||||||||||||||||||||| |||||| |||||||| ||||||||||| |||| Sbjct: 3760 cctcaccatgagcactccaaatgcccagtgtagaaccttccattcctttgaacatgatag 3701
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 325 bits (164), Expect = 1e-85 Identities = 314/364 (86%) Strand = Plus / Minus Query: 225 tatgaacaccattctcttgcattctggaacatgcgcaaccaaggactaggaccactcttc 284 ||||||||||||||||| ||||||||||||||||||| ||| || || |||||||||||| Sbjct: 224454 tatgaacaccattctctagcattctggaacatgcgcagccaggggctgggaccactcttc 224395 Query: 285 tcaacctgccaatccttgggataccatgggtattgccacatcataaaggaacgctccggg 344 |||| |||||||||||||||| ||||||| |||||||||||||| ||| ||||||| ||| Sbjct: 224394 tcaagctgccaatccttgggagaccatggatattgccacatcatgaagcaacgctctggg 224335 Query: 345 tgcggcatcagagcaaggtgccttccattgggggagcaaagggccgcaataccaagcgga 404 || ||||||| |||||| || ||||||| |||||||||||||| ||||| ||||| ||| Sbjct: 224334 tgtggcatcatagcaagatgtcttccatcaggggagcaaagggctgcaatgccaagtgga 224275 Query: 405 gagccattagggttgaaaggatagacctctgtgacgttattagcatcatcgcagtacctc 464 |||||||| || ||||| || ||||| || || | |||||||||||| || ||||||| | Sbjct: 224274 gagccattgggattgaatgggtagacttcagttatgttattagcatcgtcacagtaccgc 224215 Query: 465 agaggggccagattagatttgacaacatcagataagacatttccatctgggaagaaggct 524 | ||| ||||| ||||| || |||||| || || |||||| ||||||||||||| ||| Sbjct: 224214 acaggagccaggttagactttacaacactagctagaacattttcatctgggaagaaagct 224155 Query: 525 ctaccttcaccatgagcactccaaatgcccaatgtagagccttccatacctttgaacatt 584 || || ||||| ||||||||||||||||||| |||||| |||||||| ||||||||||| Sbjct: 224154 ctcccctcaccgtgagcactccaaatgcccattgtagaaccttccattcctttgaacatg 224095 Query: 585 atag 588 |||| Sbjct: 224094 atag 224091
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 325 bits (164), Expect = 1e-85 Identities = 311/360 (86%) Strand = Plus / Plus Query: 229 aacaccattctcttgcattctggaacatgcgcaaccaaggactaggaccactcttctcaa 288 ||||||||||||| ||||||||||||||||||| ||| ||||| ||||||| |||||||| Sbjct: 38612759 aacaccattctctggcattctggaacatgcgcagccagggactgggaccacacttctcaa 38612818 Query: 289 cctgccaatccttgggataccatgggtattgccacatcataaaggaacgctccgggtgcg 348 |||||| ||||||||||||||||| |||||||||||||| ||| ||||||| ||||| | Sbjct: 38612819 gctgccattccttgggataccatggatattgccacatcatgaagcaacgctctgggtgtg 38612878 Query: 349 gcatcagagcaaggtgccttccattgggggagcaaagggccgcaataccaagcggagagc 408 |||||| |||||| || ||||||| |||||||||||||| ||||| ||||| ||||||| Sbjct: 38612879 gcatcatagcaagatgtcttccatcaggggagcaaagggctgcaatgccaaggggagagc 38612938 Query: 409 cattagggttgaaaggatagacctctgtgacgttattagcatcatcgcagtacctcagag 468 |||| || ||||| || ||||| || || | |||||||||||| || ||||||| || || Sbjct: 38612939 cattgggattgaacgggtagacttcggtaatgttattagcatcgtcacagtaccgcacag 38612998 Query: 469 gggccagattagatttgacaacatcagataagacatttccatctgggaagaaggctctac 528 | ||||| ||||| || |||||| || || |||||| ||||||||||||| ||||| | Sbjct: 38612999 gagccaggttagagttcacaacactagctagaacattttcatctgggaagaaagctctcc 38613058 Query: 529 cttcaccatgagcactccaaatgcccaatgtagagccttccatacctttgaacattatag 588 | ||||||||||||||||||||||||| |||||| |||||||| ||||||||||| |||| Sbjct: 38613059 cctcaccatgagcactccaaatgcccagtgtagaaccttccattcctttgaacatgatag 38613118 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 466 gaggggccagattagatttg 485 |||||||||||||||||||| Sbjct: 37526952 gaggggccagattagatttg 37526933
>dbj|AP003346.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0434C04 Length = 150064 Score = 325 bits (164), Expect = 1e-85 Identities = 311/360 (86%) Strand = Plus / Plus Query: 229 aacaccattctcttgcattctggaacatgcgcaaccaaggactaggaccactcttctcaa 288 ||||||||||||| ||||||||||||||||||| ||| ||||| ||||||| |||||||| Sbjct: 133440 aacaccattctctggcattctggaacatgcgcagccagggactgggaccacacttctcaa 133499 Query: 289 cctgccaatccttgggataccatgggtattgccacatcataaaggaacgctccgggtgcg 348 |||||| ||||||||||||||||| |||||||||||||| ||| ||||||| ||||| | Sbjct: 133500 gctgccattccttgggataccatggatattgccacatcatgaagcaacgctctgggtgtg 133559 Query: 349 gcatcagagcaaggtgccttccattgggggagcaaagggccgcaataccaagcggagagc 408 |||||| |||||| || ||||||| |||||||||||||| ||||| ||||| ||||||| Sbjct: 133560 gcatcatagcaagatgtcttccatcaggggagcaaagggctgcaatgccaaggggagagc 133619 Query: 409 cattagggttgaaaggatagacctctgtgacgttattagcatcatcgcagtacctcagag 468 |||| || ||||| || ||||| || || | |||||||||||| || ||||||| || || Sbjct: 133620 cattgggattgaacgggtagacttcggtaatgttattagcatcgtcacagtaccgcacag 133679 Query: 469 gggccagattagatttgacaacatcagataagacatttccatctgggaagaaggctctac 528 | ||||| ||||| || |||||| || || |||||| ||||||||||||| ||||| | Sbjct: 133680 gagccaggttagagttcacaacactagctagaacattttcatctgggaagaaagctctcc 133739 Query: 529 cttcaccatgagcactccaaatgcccaatgtagagccttccatacctttgaacattatag 588 | ||||||||||||||||||||||||| |||||| |||||||| ||||||||||| |||| Sbjct: 133740 cctcaccatgagcactccaaatgcccagtgtagaaccttccattcctttgaacatgatag 133799
>dbj|AP003431.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1099D03 Length = 191022 Score = 325 bits (164), Expect = 1e-85 Identities = 311/360 (86%) Strand = Plus / Plus Query: 229 aacaccattctcttgcattctggaacatgcgcaaccaaggactaggaccactcttctcaa 288 ||||||||||||| ||||||||||||||||||| ||| ||||| ||||||| |||||||| Sbjct: 70732 aacaccattctctggcattctggaacatgcgcagccagggactgggaccacacttctcaa 70791 Query: 289 cctgccaatccttgggataccatgggtattgccacatcataaaggaacgctccgggtgcg 348 |||||| ||||||||||||||||| |||||||||||||| ||| ||||||| ||||| | Sbjct: 70792 gctgccattccttgggataccatggatattgccacatcatgaagcaacgctctgggtgtg 70851 Query: 349 gcatcagagcaaggtgccttccattgggggagcaaagggccgcaataccaagcggagagc 408 |||||| |||||| || ||||||| |||||||||||||| ||||| ||||| ||||||| Sbjct: 70852 gcatcatagcaagatgtcttccatcaggggagcaaagggctgcaatgccaaggggagagc 70911 Query: 409 cattagggttgaaaggatagacctctgtgacgttattagcatcatcgcagtacctcagag 468 |||| || ||||| || ||||| || || | |||||||||||| || ||||||| || || Sbjct: 70912 cattgggattgaacgggtagacttcggtaatgttattagcatcgtcacagtaccgcacag 70971 Query: 469 gggccagattagatttgacaacatcagataagacatttccatctgggaagaaggctctac 528 | ||||| ||||| || |||||| || || |||||| ||||||||||||| ||||| | Sbjct: 70972 gagccaggttagagttcacaacactagctagaacattttcatctgggaagaaagctctcc 71031 Query: 529 cttcaccatgagcactccaaatgcccaatgtagagccttccatacctttgaacattatag 588 | ||||||||||||||||||||||||| |||||| |||||||| ||||||||||| |||| Sbjct: 71032 cctcaccatgagcactccaaatgcccagtgtagaaccttccattcctttgaacatgatag 71091
>gb|AC084818.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0668H12, complete sequence Length = 160603 Score = 325 bits (164), Expect = 1e-85 Identities = 314/364 (86%) Strand = Plus / Minus Query: 225 tatgaacaccattctcttgcattctggaacatgcgcaaccaaggactaggaccactcttc 284 ||||||||||||||||| ||||||||||||||||||| ||| || || |||||||||||| Sbjct: 106638 tatgaacaccattctctagcattctggaacatgcgcagccaggggctgggaccactcttc 106579 Query: 285 tcaacctgccaatccttgggataccatgggtattgccacatcataaaggaacgctccggg 344 |||| |||||||||||||||| ||||||| |||||||||||||| ||| ||||||| ||| Sbjct: 106578 tcaagctgccaatccttgggagaccatggatattgccacatcatgaagcaacgctctggg 106519 Query: 345 tgcggcatcagagcaaggtgccttccattgggggagcaaagggccgcaataccaagcgga 404 || ||||||| |||||| || ||||||| |||||||||||||| ||||| ||||| ||| Sbjct: 106518 tgtggcatcatagcaagatgtcttccatcaggggagcaaagggctgcaatgccaagtgga 106459 Query: 405 gagccattagggttgaaaggatagacctctgtgacgttattagcatcatcgcagtacctc 464 |||||||| || ||||| || ||||| || || | |||||||||||| || ||||||| | Sbjct: 106458 gagccattgggattgaatgggtagacttcagttatgttattagcatcgtcacagtaccgc 106399 Query: 465 agaggggccagattagatttgacaacatcagataagacatttccatctgggaagaaggct 524 | ||| ||||| ||||| || |||||| || || |||||| ||||||||||||| ||| Sbjct: 106398 acaggagccaggttagactttacaacactagctagaacattttcatctgggaagaaagct 106339 Query: 525 ctaccttcaccatgagcactccaaatgcccaatgtagagccttccatacctttgaacatt 584 || || ||||| ||||||||||||||||||| |||||| |||||||| ||||||||||| Sbjct: 106338 ctcccctcaccgtgagcactccaaatgcccattgtagaaccttccattcctttgaacatg 106279 Query: 585 atag 588 |||| Sbjct: 106278 atag 106275
>dbj|AK106608.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-112-E12, full insert sequence Length = 2772 Score = 309 bits (156), Expect = 6e-81 Identities = 310/360 (86%), Gaps = 1/360 (0%) Strand = Plus / Minus Query: 229 aacaccattctcttgcattctggaacatgcgcaaccaaggactaggaccactcttctcaa 288 ||||||||| ||| ||||||||||||||||||| ||| ||||| ||||||| |||||||| Sbjct: 2377 aacaccatt-tctggcattctggaacatgcgcagccagggactgggaccacacttctcaa 2319 Query: 289 cctgccaatccttgggataccatgggtattgccacatcataaaggaacgctccgggtgcg 348 |||||| ||||||||||||||||| |||||||||||||| ||| ||||||| ||||| | Sbjct: 2318 gctgccattccttgggataccatggatattgccacatcatgaagcaacgctctgggtgtg 2259 Query: 349 gcatcagagcaaggtgccttccattgggggagcaaagggccgcaataccaagcggagagc 408 |||||| |||||| || ||||||| |||||||||||||| ||||| ||||| ||||||| Sbjct: 2258 gcatcatagcaagatgtcttccatcaggggagcaaagggctgcaatgccaaggggagagc 2199 Query: 409 cattagggttgaaaggatagacctctgtgacgttattagcatcatcgcagtacctcagag 468 |||| || ||||| || ||||| || || | |||||||||||| || ||||||| || || Sbjct: 2198 cattgggattgaacgggtagacttcggtaatgttattagcatcgtcacagtaccgcacag 2139 Query: 469 gggccagattagatttgacaacatcagataagacatttccatctgggaagaaggctctac 528 | ||||| ||||| || |||||| || || |||||| ||||||||||||| ||||| | Sbjct: 2138 gagccaggttagagttcacaacactagctagaacattttcatctgggaagaaagctctcc 2079 Query: 529 cttcaccatgagcactccaaatgcccaatgtagagccttccatacctttgaacattatag 588 | ||||||||||||||||||||||||| |||||| |||||||| ||||||||||| |||| Sbjct: 2078 cctcaccatgagcactccaaatgcccagtgtagaaccttccattcctttgaacatgatag 2019
>gb|AY105195.1| Zea mays PCO078174 mRNA sequence Length = 468 Score = 157 bits (79), Expect = 5e-35 Identities = 115/127 (90%) Strand = Plus / Minus Query: 224 ctatgaacaccattctcttgcattctggaacatgcgcaaccaaggactaggaccactctt 283 |||||||||||||||||| |||||||||||||| |||| |||||| || || |||||||| Sbjct: 138 ctatgaacaccattctctagcattctggaacattcgcagccaagggctggggccactctt 79 Query: 284 ctcaacctgccaatccttgggataccatgggtattgccacatcataaaggaacgctccgg 343 |||||||||||| ||||||||||||||||| |||||||||||||| ||| ||||||| || Sbjct: 78 ctcaacctgccattccttgggataccatggatattgccacatcatgaagcaacgctctgg 19 Query: 344 gtgcggc 350 |||||| Sbjct: 18 atgcggc 12
>gb|AY069939.1| Vigna unguiculata formylglycinamide ribonucleotide amidotransferase (pur4) mRNA, partial cds Length = 4115 Score = 107 bits (54), Expect = 4e-20 Identities = 87/98 (88%) Strand = Plus / Minus Query: 228 gaacaccattctcttgcattctggaacatgcgcaaccaaggactaggaccactcttctca 287 |||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||| Sbjct: 3866 gaacaccactctcttgcattctggaacatgcgcaaccaaggactaggcccattcttctcc 3807 Query: 288 acctgccaatccttgggataccatgggtattgccacat 325 || | ||| | ||| |||||||||||| | |||||||| Sbjct: 3806 acatcccagtgctttggataccatgggaactgccacat 3769
>gb|AY178839.1| Glycine max phosphoribosylformylglycinamidine synthase (FGAM2) gene, complete cds Length = 6450 Score = 97.6 bits (49), Expect = 4e-17 Identities = 121/145 (83%) Strand = Plus / Minus Query: 228 gaacaccattctcttgcattctggaacatgcgcaaccaaggactaggaccactcttctca 287 |||||||| ||||||||||||||||||||||| |||||||||||||| || ||||||| Sbjct: 6421 gaacaccactctcttgcattctggaacatgcgtaaccaaggactaggccccttcttctcc 6362 Query: 288 acctgccaatccttgggataccatgggtattgccacatcataaaggaacgctccgggtgc 347 || | ||| | ||| |||||||||||| | |||||||| | ||| ||||||| || || Sbjct: 6361 acatcccactgctttggataccatgggaactgccacattaagaagcaacgctcaggatga 6302 Query: 348 ggcatcagagcaaggtgccttccat 372 ||||||| ||||| ||||| |||| Sbjct: 6301 ggcatcatggcaagatgcctcccat 6277
>ref|XM_448421.1| Candida glabrata CBS138, CAGL0K04499g partial mRNA Length = 4041 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 521 ggctctaccttcaccatgagca 542 |||||||||||||||||||||| Sbjct: 3744 ggctctaccttcaccatgagca 3723
>emb|CR380957.1| Candida glabrata strain CBS138 chromosome K complete sequence Length = 1302002 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 521 ggctctaccttcaccatgagca 542 |||||||||||||||||||||| Sbjct: 425358 ggctctaccttcaccatgagca 425379
>gb|DQ140322.1| Hepatitis C virus isolate S1 non-structural protein 5A gene, partial cds Length = 366 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 365 ccttccattgggggagcaaagg 386 |||||||||||||||||||||| Sbjct: 289 ccttccattgggggagcaaagg 268
>ref|NM_059603.2| Caenorhabditis elegans protein KINase family member (kin-14) (kin-14) mRNA, complete cds Length = 1268 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 535 catgagcactccaaatgcccaa 556 |||||||||||||||||||||| Sbjct: 1002 catgagcactccaaatgcccaa 981
>dbj|AB054296.2| Oryzias latipes OlGC2 gene for membrane guanylyl cyclase OlGC2, complete cds Length = 27582 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 130 tgagaactgctgtctgtcactt 151 |||||||||||||||||||||| Sbjct: 16110 tgagaactgctgtctgtcactt 16089
>gb|AF104455.1| Homo sapiens chromosome 7qtelo BAC F6, complete sequence Length = 71353 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 536 atgagcactccaaatgcccaa 556 ||||||||||||||||||||| Sbjct: 44594 atgagcactccaaatgcccaa 44614
>ref|XM_744414.1| Aspergillus fumigatus Af293 DNA excision repair protein Rad26L (Afu2g03750) partial mRNA Length = 3027 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 318 tgccacatcataaaggaacgc 338 ||||||||||||||||||||| Sbjct: 1150 tgccacatcataaaggaacgc 1170
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 acgctccgggtgcggcatca 354 |||||||||||||||||||| Sbjct: 1165108 acgctccgggtgcggcatca 1165089
>ref|XM_706027.1| Candida albicans SC5314 5'-phosphoribosylformyl glycinamidine synthetase (CaO19.13694), mRNA Length = 4113 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 522 gctctaccttcaccatgagc 541 |||||||||||||||||||| Sbjct: 3812 gctctaccttcaccatgagc 3793
>ref|XM_706010.1| Candida albicans SC5314 5'-phosphoribosylformyl glycinamidine synthetase (CaO19.6317), mRNA Length = 4113 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 522 gctctaccttcaccatgagc 541 |||||||||||||||||||| Sbjct: 3812 gctctaccttcaccatgagc 3793
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 acgctccgggtgcggcatca 354 |||||||||||||||||||| Sbjct: 1437134 acgctccgggtgcggcatca 1437115
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 cgctccgggtgcggcatcag 355 |||||||||||||||||||| Sbjct: 2026359 cgctccgggtgcggcatcag 2026378
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 cgctccgggtgcggcatcag 355 |||||||||||||||||||| Sbjct: 4240145 cgctccgggtgcggcatcag 4240164
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 ttgcggaatcatgtagctca 29 |||||||||||||||||||| Sbjct: 188262 ttgcggaatcatgtagctca 188281
>emb|CR378667.1| Photobacterium profundum SS9; segment 5/12 Length = 349080 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 agttcttccagcgcgataat 172 |||||||||||||||||||| Sbjct: 213435 agttcttccagcgcgataat 213416
>emb|BX571860.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 2/17 Length = 349287 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 514 ggaagaaggctctaccttcaccat 537 ||||||||| |||||||||||||| Sbjct: 136136 ggaagaaggatctaccttcaccat 136113
>gb|AC131248.14| Medicago truncatula clone mth2-28n22, complete sequence Length = 136333 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 caatttggtcccttatctat 227 |||||||||||||||||||| Sbjct: 4854 caatttggtcccttatctat 4873
>gb|AC096543.2| Homo sapiens chromosome 1 clone RP11-335E6, complete sequence Length = 162837 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 233 ccattctcttgcattctggaacat 256 |||||||||||||| ||||||||| Sbjct: 27185 ccattctcttgcatcctggaacat 27208
>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI, complete sequence Length = 1813164 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 gtcacttgagttcttccagc 164 |||||||||||||||||||| Sbjct: 1105777 gtcacttgagttcttccagc 1105796
>dbj|AP003270.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0505D12 Length = 146951 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 466 gaggggccagattagatttg 485 |||||||||||||||||||| Sbjct: 121489 gaggggccagattagatttg 121470
>ref|NM_211273.1| Eremothecium gossypii AFR371Wp (AFR371W), mRNA Length = 3081 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 gtcacttgagttcttccagc 164 |||||||||||||||||||| Sbjct: 15 gtcacttgagttcttccagc 34
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 acgctccgggtgcggcatca 354 |||||||||||||||||||| Sbjct: 4680814 acgctccgggtgcggcatca 4680833
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 cgctccgggtgcggcatcag 355 |||||||||||||||||||| Sbjct: 1846041 cgctccgggtgcggcatcag 1846022
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 acgctccgggtgcggcatca 354 |||||||||||||||||||| Sbjct: 1188594 acgctccgggtgcggcatca 1188575 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,446,398 Number of Sequences: 3902068 Number of extensions: 4446398 Number of successful extensions: 77495 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77278 Number of HSP's gapped (non-prelim): 216 length of query: 599 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 576 effective length of database: 17,143,297,704 effective search space: 9874539477504 effective search space used: 9874539477504 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)