| Clone Name | rbags17c21 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | RHM1_ARATH (Q9SYM5) Probable rhamnose biosynthetic enzyme 1 (EC ... | 122 | 9e-28 | 2 | RHM3_ARATH (Q9LH76) Probable rhamnose biosynthetic enzyme 3 (EC ... | 120 | 2e-27 | 3 | RHM2_ARATH (Q9LPG6) Probable rhamnose biosynthetic enzyme 2 (EC ... | 114 | 2e-25 | 4 | PPSA_METJA (Q57962) Probable phosphoenolpyruvate synthase (EC 2.... | 30 | 5.9 | 5 | KPC1_CANAL (P43057) Protein kinase C-like 1 (EC 2.7.11.13) (PKC 1) | 29 | 7.8 |
|---|
>RHM1_ARATH (Q9SYM5) Probable rhamnose biosynthetic enzyme 1 (EC 4.2.1.-) (EC| 1.1.1.-) Length = 669 Score = 122 bits (305), Expect = 9e-28 Identities = 59/73 (80%), Positives = 63/73 (86%) Frame = -1 Query: 550 GVVSHNEILEMYRDYIDPNFSWKNFNLEEQAKVIVAPRSNNELDTVKLKTEFPELLSIKE 371 GVVSHNEILEMYRDYI+P F W NF LEEQAKVIVAPRSNNE+D KLK EFPELLSIKE Sbjct: 597 GVVSHNEILEMYRDYINPEFKWANFTLEEQAKVIVAPRSNNEMDASKLKKEFPELLSIKE 656 Query: 370 SLIKNVFKPNQKT 332 SLIK + PN+KT Sbjct: 657 SLIKYAYGPNKKT 669
>RHM3_ARATH (Q9LH76) Probable rhamnose biosynthetic enzyme 3 (EC 4.2.1.-) (EC| 1.1.1.-) Length = 664 Score = 120 bits (302), Expect = 2e-27 Identities = 56/73 (76%), Positives = 65/73 (89%) Frame = -1 Query: 550 GVVSHNEILEMYRDYIDPNFSWKNFNLEEQAKVIVAPRSNNELDTVKLKTEFPELLSIKE 371 GVVSHNEILEMY+ YI+P+F W NFNLEEQAKVIVAPRSNNE+D KL EFPE+LSIK+ Sbjct: 592 GVVSHNEILEMYKSYIEPDFKWSNFNLEEQAKVIVAPRSNNEMDGAKLSKEFPEMLSIKD 651 Query: 370 SLIKNVFKPNQKT 332 SLIK VF+PN++T Sbjct: 652 SLIKYVFEPNKRT 664
>RHM2_ARATH (Q9LPG6) Probable rhamnose biosynthetic enzyme 2 (EC 4.2.1.-) (EC| 1.1.1.-) (RHAMNOSE BIOSYNTHESIS 2 protein) (NDP-rhamnose synthase) (MUCILAGE-MODIFIED4 protein) (UDP-L-rhamnose synthase MUM4) Length = 667 Score = 114 bits (284), Expect = 2e-25 Identities = 53/73 (72%), Positives = 63/73 (86%) Frame = -1 Query: 550 GVVSHNEILEMYRDYIDPNFSWKNFNLEEQAKVIVAPRSNNELDTVKLKTEFPELLSIKE 371 GVVSHNEILEMY++YI+P F W NF +EEQAKVIVA RSNNE+D KL EFPE+LSIKE Sbjct: 595 GVVSHNEILEMYKNYIEPGFKWSNFTVEEQAKVIVAARSNNEMDGSKLSKEFPEMLSIKE 654 Query: 370 SLIKNVFKPNQKT 332 SL+K VF+PN++T Sbjct: 655 SLLKYVFEPNKRT 667
>PPSA_METJA (Q57962) Probable phosphoenolpyruvate synthase (EC 2.7.9.2)| (Pyruvate, water dikinase) (PEP synthase) [Contains: Mja pep intein (Mja pepA intein)] Length = 1188 Score = 29.6 bits (65), Expect = 5.9 Identities = 17/61 (27%), Positives = 29/61 (47%) Frame = -1 Query: 511 DYIDPNFSWKNFNLEEQAKVIVAPRSNNELDTVKLKTEFPELLSIKESLIKNVFKPNQKT 332 D+I ++ + + + +A NNEL + K + P +L + E +IK K KT Sbjct: 1071 DFIKEGINFVSLGTNDLTQYTIAIDRNNELVSKYYKEDHPAVLKLVEHVIKTCKKHGIKT 1130 Query: 331 S 329 S Sbjct: 1131 S 1131
>KPC1_CANAL (P43057) Protein kinase C-like 1 (EC 2.7.11.13) (PKC 1)| Length = 1097 Score = 29.3 bits (64), Expect = 7.8 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%) Frame = -1 Query: 154 IPCHYQIITQN-TTWCCYCIL*IRWEMDRVRNKVLCCIVLSH 32 IP ++ IT + T WCC+C + W VR K C V+ H Sbjct: 479 IPHRFEPITNHGTKWCCHCGYILPWGKKNVR-KCTECGVMCH 519 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,439,509 Number of Sequences: 219361 Number of extensions: 1727417 Number of successful extensions: 4009 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 3929 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4009 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4488201198 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)