ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags17c21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RHM1_ARATH (Q9SYM5) Probable rhamnose biosynthetic enzyme 1 (EC ... 122 9e-28
2RHM3_ARATH (Q9LH76) Probable rhamnose biosynthetic enzyme 3 (EC ... 120 2e-27
3RHM2_ARATH (Q9LPG6) Probable rhamnose biosynthetic enzyme 2 (EC ... 114 2e-25
4PPSA_METJA (Q57962) Probable phosphoenolpyruvate synthase (EC 2.... 30 5.9
5KPC1_CANAL (P43057) Protein kinase C-like 1 (EC 2.7.11.13) (PKC 1) 29 7.8

>RHM1_ARATH (Q9SYM5) Probable rhamnose biosynthetic enzyme 1 (EC 4.2.1.-) (EC|
           1.1.1.-)
          Length = 669

 Score =  122 bits (305), Expect = 9e-28
 Identities = 59/73 (80%), Positives = 63/73 (86%)
 Frame = -1

Query: 550 GVVSHNEILEMYRDYIDPNFSWKNFNLEEQAKVIVAPRSNNELDTVKLKTEFPELLSIKE 371
           GVVSHNEILEMYRDYI+P F W NF LEEQAKVIVAPRSNNE+D  KLK EFPELLSIKE
Sbjct: 597 GVVSHNEILEMYRDYINPEFKWANFTLEEQAKVIVAPRSNNEMDASKLKKEFPELLSIKE 656

Query: 370 SLIKNVFKPNQKT 332
           SLIK  + PN+KT
Sbjct: 657 SLIKYAYGPNKKT 669



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>RHM3_ARATH (Q9LH76) Probable rhamnose biosynthetic enzyme 3 (EC 4.2.1.-) (EC|
           1.1.1.-)
          Length = 664

 Score =  120 bits (302), Expect = 2e-27
 Identities = 56/73 (76%), Positives = 65/73 (89%)
 Frame = -1

Query: 550 GVVSHNEILEMYRDYIDPNFSWKNFNLEEQAKVIVAPRSNNELDTVKLKTEFPELLSIKE 371
           GVVSHNEILEMY+ YI+P+F W NFNLEEQAKVIVAPRSNNE+D  KL  EFPE+LSIK+
Sbjct: 592 GVVSHNEILEMYKSYIEPDFKWSNFNLEEQAKVIVAPRSNNEMDGAKLSKEFPEMLSIKD 651

Query: 370 SLIKNVFKPNQKT 332
           SLIK VF+PN++T
Sbjct: 652 SLIKYVFEPNKRT 664



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>RHM2_ARATH (Q9LPG6) Probable rhamnose biosynthetic enzyme 2 (EC 4.2.1.-) (EC|
           1.1.1.-) (RHAMNOSE BIOSYNTHESIS 2 protein) (NDP-rhamnose
           synthase) (MUCILAGE-MODIFIED4 protein) (UDP-L-rhamnose
           synthase MUM4)
          Length = 667

 Score =  114 bits (284), Expect = 2e-25
 Identities = 53/73 (72%), Positives = 63/73 (86%)
 Frame = -1

Query: 550 GVVSHNEILEMYRDYIDPNFSWKNFNLEEQAKVIVAPRSNNELDTVKLKTEFPELLSIKE 371
           GVVSHNEILEMY++YI+P F W NF +EEQAKVIVA RSNNE+D  KL  EFPE+LSIKE
Sbjct: 595 GVVSHNEILEMYKNYIEPGFKWSNFTVEEQAKVIVAARSNNEMDGSKLSKEFPEMLSIKE 654

Query: 370 SLIKNVFKPNQKT 332
           SL+K VF+PN++T
Sbjct: 655 SLLKYVFEPNKRT 667



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>PPSA_METJA (Q57962) Probable phosphoenolpyruvate synthase (EC 2.7.9.2)|
            (Pyruvate, water dikinase) (PEP synthase) [Contains: Mja
            pep intein (Mja pepA intein)]
          Length = 1188

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = -1

Query: 511  DYIDPNFSWKNFNLEEQAKVIVAPRSNNELDTVKLKTEFPELLSIKESLIKNVFKPNQKT 332
            D+I    ++ +    +  +  +A   NNEL +   K + P +L + E +IK   K   KT
Sbjct: 1071 DFIKEGINFVSLGTNDLTQYTIAIDRNNELVSKYYKEDHPAVLKLVEHVIKTCKKHGIKT 1130

Query: 331  S 329
            S
Sbjct: 1131 S 1131



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>KPC1_CANAL (P43057) Protein kinase C-like 1 (EC 2.7.11.13) (PKC 1)|
          Length = 1097

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 154 IPCHYQIITQN-TTWCCYCIL*IRWEMDRVRNKVLCCIVLSH 32
           IP  ++ IT + T WCC+C   + W    VR K   C V+ H
Sbjct: 479 IPHRFEPITNHGTKWCCHCGYILPWGKKNVR-KCTECGVMCH 519


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,439,509
Number of Sequences: 219361
Number of extensions: 1727417
Number of successful extensions: 4009
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4009
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4488201198
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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