ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags17c21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 145 2e-31
2dbj|AP005823.3| Oryza sativa (japonica cultivar-group) genomic D... 145 2e-31
3dbj|AP005775.3| Oryza sativa (japonica cultivar-group) genomic D... 145 2e-31
4dbj|AK071766.1| Oryza sativa (japonica cultivar-group) cDNA clon... 145 2e-31
5gb|AF359122.1| Pinus sylvestris isolate plus tree E1101 putative... 88 4e-14
6gb|AF359121.1| Pinus sylvestris isolate plus tree E635C putative... 80 9e-12
7gb|AF051236.1|AF051236 Picea mariana hypothetical protein (Sb50)... 76 1e-10
8ref|NM_104228.3| Arabidopsis thaliana MUM4 (MUCILAGE-MODIFIED 4)... 62 2e-06
9gb|AY328518.1| Arabidopsis thaliana putative UDP-L-rhamnose synt... 62 2e-06
10emb|AJ565874.1|ATH565874 Arabidopsis thaliana mRNA for putative ... 62 2e-06
11gb|AY048277.1| Arabidopsis thaliana At1g53500/F22G10_13 mRNA, co... 62 2e-06
12emb|BX817582.1|CNS0AEDB Arabidopsis thaliana Full-length cDNA Co... 62 2e-06
13gb|AC024260.4|AC024260 Arabidopsis thaliana chromosome 1 BAC F22... 62 2e-06
14gb|AC018748.3|T3F20 Sequence of BAC T3F20 from Arabidopsis thali... 62 2e-06
15gb|BT002264.1| Arabidopsis thaliana At1g53500/F22G10_13 mRNA, co... 62 2e-06
16ref|NM_106505.3| Arabidopsis thaliana ATTPS1 (TREHALOSE-6-PHOSPH... 56 1e-04
17ref|NM_106504.2| Arabidopsis thaliana RHM1; NAD binding / cataly... 56 1e-04
18ref|NM_001036220.1| Arabidopsis thaliana RHM1; NAD binding / cat... 56 1e-04
19gb|AC007260.2| Arabidopsis thaliana chromosome I BAC T30F21 geno... 56 1e-04
20gb|AY081471.1| Arabidopsis thaliana similar to dTDP-D-glucose 4,... 56 1e-04
21gb|AY042833.1| Arabidopsis thaliana Similar to dTDP-D-glucose 4,... 56 1e-04
22emb|BX815784.1|CNS0AAK8 Arabidopsis thaliana Full-length cDNA Co... 56 1e-04
23ref|NM_104978.3| Arabidopsis thaliana NRS/ER (NUCLEOTIDE-RHAMNOS... 54 5e-04
24gb|AY513232.1| Arabidopsis thaliana 3,5-epimerase/4-reductase (N... 54 5e-04
25gb|AF332445.1| Arabidopsis thaliana clone C00141 (e) unknown pro... 54 5e-04
26gb|AF387005.1|AF387005 Arabidopsis thaliana Unknown protein (F16... 54 5e-04
27emb|BX815284.1|CNS0AAH5 Arabidopsis thaliana Full-length cDNA Co... 54 5e-04
28gb|AY088123.1| Arabidopsis thaliana clone 41505 mRNA, complete s... 54 5e-04
29gb|AC011000.3|F16P17 Sequence of BAC F16P17 from Arabidopsis tha... 54 5e-04
30gb|AY103981.1| Zea mays PCO118173 mRNA sequence 50 0.008
31gb|AC182659.2| Populus trichocarpa clone Pop1-125A14, complete s... 48 0.031
32ref|NM_112340.2| Arabidopsis thaliana RHM3; catalytic AT3G14790 ... 46 0.12
33gb|AY142060.1| Arabidopsis thaliana At3g14790/T21E2_4 mRNA, comp... 46 0.12
34gb|AY078958.1| Arabidopsis thaliana AT3g14790/T21E2_4 mRNA, comp... 46 0.12
35dbj|AP002061.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 46 0.12
36gb|DQ378291.1| Drosophila virilis strain Tucson 15010-1001.10 ch... 44 0.48
37emb|AL772303.11| Mouse DNA sequence from clone RP23-185P20 on ch... 44 0.48
38ref|NM_196493.1| Oryza sativa (japonica cultivar-group) contains... 42 1.9
39emb|AL355595.10| Human DNA sequence from clone RP11-276G3 on chr... 42 1.9
40dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
41gb|AF229187.1|AF229187 Oryza sativa subsp. japonica BAC clone nb... 42 1.9
42dbj|AK111779.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.9
43gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
44gb|AC153378.4| Mus musculus 6 BAC RP23-106C18 (Roswell Park Canc... 40 7.5
45gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 7.5
46gb|AC133514.4| Mus musculus BAC clone RP23-212F6 from chromosome... 40 7.5
47gb|AC123844.4| Mus musculus BAC clone RP23-416P14 from chromosom... 40 7.5
48gb|AC116659.3| Mus musculus BAC clone RP24-147E15 from 7, comple... 40 7.5
49emb|CR533575.5| Zebrafish DNA sequence from clone CH211-215M13 i... 40 7.5
50emb|AL627362.2|CNS07TIX DNA centromeric region sequence from BAC... 40 7.5
51emb|AL161500.2|ATCHRIV12 Arabidopsis thaliana DNA chromosome 4, ... 40 7.5
52gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare str... 40 7.5
53gb|AY279847.1| Pteragogus cryptus Tmo-4C4 (Tmo-4C4) gene, partia... 40 7.5
54dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
55gb|AC128737.4| Mus musculus BAC clone RP23-99A8 from chromosome ... 40 7.5
56gb|AC159742.1| Ornithorhynchus anatinus chromosome UNK clone OAB... 40 7.5
57gb|AC155653.4| Mus musculus 6 BAC RP24-503P15 (Roswell Park Canc... 40 7.5
58emb|BX649615.6| Mouse DNA sequence from clone RP23-273I8 on chro... 40 7.5
59dbj|AP005299.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
60dbj|AK103544.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.5
61dbj|AK064303.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.5
62gb|AF076243.1|AF076243 Arabidopsis thaliana BAC T26N6 from chrom... 40 7.5
63gb|AC006227.1|AC006227 Homo sapiens, clone hRPK.16_A_1, complete... 40 7.5
64gb|AC164420.4| Mus musculus chromosome 8, clone RP24-388L13, com... 40 7.5
65gb|AC140446.5| Mus musculus BAC clone RP24-114J11 from chromosom... 40 7.5
66gb|AC127693.4| Mus musculus BAC clone RP23-135G19 from 17, compl... 40 7.5 
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  145 bits (73), Expect = 2e-31
 Identities = 190/229 (82%)
 Strand = Plus / Minus

                                                                            
Query: 319      gtcaagccttggatgtcttctgatttggtttgaaaacgtttttgatcagcgactccttga 378
                ||||||||||||| |||||||||||||| |||||||| |   | | ||| || |||||||
Sbjct: 27731238 gtcaagccttggacgtcttctgatttggcttgaaaacataccttaccagagaatccttga 27731179

                                                                            
Query: 379      ttgacagaagttctgggaactccgttttcaatttaacagtgtcaagttcattgttgctcc 438
                |||||| ||||||||| || ||||  ||||  ||   |   ||||| ||||| ||||| |
Sbjct: 27731178 ttgacaaaagttctggaaattccgccttcagcttggtacaatcaagctcattattgcttc 27731119

                                                                            
Query: 439      tcggtgctactatgaccttggcttgctcctccaagttgaagttcttccaggagaagtttg 498
                ||||||| ||||||||||||||||||||||||| | | ||||||||||| || || || |
Sbjct: 27731118 tcggtgcaactatgaccttggcttgctcctccagggtaaagttcttccaagaaaaattcg 27731059

                                                                 
Query: 499      gatcgatgtaatccctgtacatctccagtatctcattgtggctcaccac 547
                |||| ||||||||||| ||||| |||| ||| |||||||||||||||||
Sbjct: 27731058 gatcaatgtaatccctatacatttccaatatttcattgtggctcaccac 27731010



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 96       aggatacaatagcaacacca 115
                ||||||||||||||||||||
Sbjct: 18542704 aggatacaatagcaacacca 18542723
to top
>dbj|AP005823.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0663F07
          Length = 159046

 Score =  145 bits (73), Expect = 2e-31
 Identities = 190/229 (82%)
 Strand = Plus / Minus

                                                                         
Query: 319   gtcaagccttggatgtcttctgatttggtttgaaaacgtttttgatcagcgactccttga 378
             ||||||||||||| |||||||||||||| |||||||| |   | | ||| || |||||||
Sbjct: 16571 gtcaagccttggacgtcttctgatttggcttgaaaacataccttaccagagaatccttga 16512

                                                                         
Query: 379   ttgacagaagttctgggaactccgttttcaatttaacagtgtcaagttcattgttgctcc 438
             |||||| ||||||||| || ||||  ||||  ||   |   ||||| ||||| ||||| |
Sbjct: 16511 ttgacaaaagttctggaaattccgccttcagcttggtacaatcaagctcattattgcttc 16452

                                                                         
Query: 439   tcggtgctactatgaccttggcttgctcctccaagttgaagttcttccaggagaagtttg 498
             ||||||| ||||||||||||||||||||||||| | | ||||||||||| || || || |
Sbjct: 16451 tcggtgcaactatgaccttggcttgctcctccagggtaaagttcttccaagaaaaattcg 16392

                                                              
Query: 499   gatcgatgtaatccctgtacatctccagtatctcattgtggctcaccac 547
             |||| ||||||||||| ||||| |||| ||| |||||||||||||||||
Sbjct: 16391 gatcaatgtaatccctatacatttccaatatttcattgtggctcaccac 16343
to top
>dbj|AP005775.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBb0005A04
          Length = 140723

 Score =  145 bits (73), Expect = 2e-31
 Identities = 190/229 (82%)
 Strand = Plus / Minus

                                                                          
Query: 319    gtcaagccttggatgtcttctgatttggtttgaaaacgtttttgatcagcgactccttga 378
              ||||||||||||| |||||||||||||| |||||||| |   | | ||| || |||||||
Sbjct: 117104 gtcaagccttggacgtcttctgatttggcttgaaaacataccttaccagagaatccttga 117045

                                                                          
Query: 379    ttgacagaagttctgggaactccgttttcaatttaacagtgtcaagttcattgttgctcc 438
              |||||| ||||||||| || ||||  ||||  ||   |   ||||| ||||| ||||| |
Sbjct: 117044 ttgacaaaagttctggaaattccgccttcagcttggtacaatcaagctcattattgcttc 116985

                                                                          
Query: 439    tcggtgctactatgaccttggcttgctcctccaagttgaagttcttccaggagaagtttg 498
              ||||||| ||||||||||||||||||||||||| | | ||||||||||| || || || |
Sbjct: 116984 tcggtgcaactatgaccttggcttgctcctccagggtaaagttcttccaagaaaaattcg 116925

                                                               
Query: 499    gatcgatgtaatccctgtacatctccagtatctcattgtggctcaccac 547
              |||| ||||||||||| ||||| |||| ||| |||||||||||||||||
Sbjct: 116924 gatcaatgtaatccctatacatttccaatatttcattgtggctcaccac 116876
to top
>dbj|AK071766.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111H09, full
            insert sequence
          Length = 1447

 Score =  145 bits (73), Expect = 2e-31
 Identities = 190/229 (82%)
 Strand = Plus / Minus

                                                                        
Query: 319  gtcaagccttggatgtcttctgatttggtttgaaaacgtttttgatcagcgactccttga 378
            ||||||||||||| |||||||||||||| |||||||| |   | | ||| || |||||||
Sbjct: 1051 gtcaagccttggacgtcttctgatttggcttgaaaacataccttaccagagaatccttga 992

                                                                        
Query: 379  ttgacagaagttctgggaactccgttttcaatttaacagtgtcaagttcattgttgctcc 438
            |||||| ||||||||| || ||||  ||||  ||   |   ||||| ||||| ||||| |
Sbjct: 991  ttgacaaaagttctggaaattccgccttcagcttggtacaatcaagctcattattgcttc 932

                                                                        
Query: 439  tcggtgctactatgaccttggcttgctcctccaagttgaagttcttccaggagaagtttg 498
            ||||||| ||||||||||||||||||||||||| | | ||||||||||| || || || |
Sbjct: 931  tcggtgcaactatgaccttggcttgctcctccagggtaaagttcttccaagaaaaattcg 872

                                                             
Query: 499  gatcgatgtaatccctgtacatctccagtatctcattgtggctcaccac 547
            |||| ||||||||||| ||||| |||| ||| |||||||||||||||||
Sbjct: 871  gatcaatgtaatccctatacatttccaatatttcattgtggctcaccac 823
to top
>gb|AF359122.1| Pinus sylvestris isolate plus tree E1101 putative dTDP-glucose
           4,6-dehydratase gene, partial cds
          Length = 212

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 80/92 (86%)
 Strand = Plus / Minus

                                                                       
Query: 450 atgaccttggcttgctcctccaagttgaagttcttccaggagaagtttggatcgatgtaa 509
           ||||||||||| |||||||||| | |||| |||||||| |   || | ||||||||||| 
Sbjct: 143 atgaccttggcctgctcctccagggtgaaattcttccaagtatagctcggatcgatgtag 84

                                           
Query: 510 tccctgtacatctccagtatctcattgtggct 541
           ||||||||||||||||| ||||||||||||||
Sbjct: 83  tccctgtacatctccaggatctcattgtggct 52
to top
>gb|AF359121.1| Pinus sylvestris isolate plus tree E635C putative dTDP-glucose
           4,6-dehydratase gene, partial cds
          Length = 212

 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 79/92 (85%)
 Strand = Plus / Minus

                                                                       
Query: 450 atgaccttggcttgctcctccaagttgaagttcttccaggagaagtttggatcgatgtaa 509
           ||||||||||| |||||||||| | |||| |||||||| |   || | ||||||||||| 
Sbjct: 143 atgaccttggcctgctcctccagggtgaaattcttccaagtatagctcggatcgatgtag 84

                                           
Query: 510 tccctgtacatctccagtatctcattgtggct 541
           ||||||||||||||||| ||||| ||||||||
Sbjct: 83  tccctgtacatctccaggatctcgttgtggct 52
to top
>gb|AF051236.1|AF051236 Picea mariana hypothetical protein (Sb50) mRNA, partial cds
          Length = 1139

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 83/98 (84%)
 Strand = Plus / Minus

                                                                       
Query: 450 atgaccttggcttgctcctccaagttgaagttcttccaggagaagtttggatcgatgtaa 509
           ||||||||||| |||||||||| | |||| ||| |||| |   || | ||||||||||| 
Sbjct: 688 atgaccttggcctgctcctccagggtgaaattcctccaagtatagctcggatcgatgtag 629

                                                 
Query: 510 tccctgtacatctccagtatctcattgtggctcaccac 547
           ||||||||||||||||| ||||| |||||||| |||||
Sbjct: 628 tccctgtacatctccaggatctcgttgtggctaaccac 591
to top
>ref|NM_104228.3| Arabidopsis thaliana MUM4 (MUCILAGE-MODIFIED 4); catalytic AT1G53500
            (MUM4) mRNA, complete cds
          Length = 2526

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                           
Query: 501  tcgatgtaatccctgtacatctccagtatctcattgtggctcaccac 547
            |||||||||| | |||||||||||| |||||| ||||||||||||||
Sbjct: 2141 tcgatgtaattcttgtacatctccaatatctcgttgtggctcaccac 2095
to top
>gb|AY328518.1| Arabidopsis thaliana putative UDP-L-rhamnose synthase MUM4 (MUM4)
            mRNA, complete cds
          Length = 2479

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                           
Query: 501  tcgatgtaatccctgtacatctccagtatctcattgtggctcaccac 547
            |||||||||| | |||||||||||| |||||| ||||||||||||||
Sbjct: 2142 tcgatgtaattcttgtacatctccaatatctcgttgtggctcaccac 2096
to top
>emb|AJ565874.1|ATH565874 Arabidopsis thaliana mRNA for putative NDP-rhamnose synthase (rhm2
            gene)
          Length = 2004

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                           
Query: 501  tcgatgtaatccctgtacatctccagtatctcattgtggctcaccac 547
            |||||||||| | |||||||||||| |||||| ||||||||||||||
Sbjct: 1832 tcgatgtaattcttgtacatctccaatatctcgttgtggctcaccac 1786
to top
>gb|AY048277.1| Arabidopsis thaliana At1g53500/F22G10_13 mRNA, complete cds
          Length = 1739

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                           
Query: 501  tcgatgtaatccctgtacatctccagtatctcattgtggctcaccac 547
            |||||||||| | |||||||||||| |||||| ||||||||||||||
Sbjct: 1402 tcgatgtaattcttgtacatctccaatatctcgttgtggctcaccac 1356
to top
>emb|BX817582.1|CNS0AEDB Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL31ZC03 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 525

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                          
Query: 501 tcgatgtaatccctgtacatctccagtatctcattgtggctcaccac 547
           |||||||||| | |||||||||||| |||||| ||||||||||||||
Sbjct: 146 tcgatgtaattcttgtacatctccaatatctcgttgtggctcaccac 100
to top
>gb|AC024260.4|AC024260 Arabidopsis thaliana chromosome 1 BAC F22G10 genomic sequence, complete
              sequence
          Length = 111936

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                             
Query: 501    tcgatgtaatccctgtacatctccagtatctcattgtggctcaccac 547
              |||||||||| | |||||||||||| |||||| ||||||||||||||
Sbjct: 104856 tcgatgtaattcttgtacatctccaatatctcgttgtggctcaccac 104810
to top
>gb|AC018748.3|T3F20 Sequence of BAC T3F20 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 99960

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                            
Query: 501   tcgatgtaatccctgtacatctccagtatctcattgtggctcaccac 547
             |||||||||| | |||||||||||| |||||| ||||||||||||||
Sbjct: 63762 tcgatgtaattcttgtacatctccaatatctcgttgtggctcaccac 63716
to top
>gb|BT002264.1| Arabidopsis thaliana At1g53500/F22G10_13 mRNA, complete cds
          Length = 1497

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                           
Query: 501  tcgatgtaatccctgtacatctccagtatctcattgtggctcaccac 547
            |||||||||| | |||||||||||| |||||| ||||||||||||||
Sbjct: 1325 tcgatgtaattcttgtacatctccaatatctcgttgtggctcaccac 1279
to top
>ref|NM_106505.3| Arabidopsis thaliana ATTPS1 (TREHALOSE-6-PHOSPHATE SYNTHASE);
            transferase, transferring glycosyl groups AT1G78580
            (ATTPS1) mRNA, complete cds
          Length = 4635

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                            
Query: 503  gatgtaatccctgtacatctccagtatctcattgtggctcaccacacc 550
            |||||| || ||||||||||| || ||||| |||||||||||||||||
Sbjct: 3376 gatgtagtctctgtacatctctaggatctcgttgtggctcaccacacc 3423
to top
>ref|NM_106504.2| Arabidopsis thaliana RHM1; NAD binding / catalytic AT1G78570 (RHM1)
            transcript variant AT1G78570.1 mRNA, complete cds
          Length = 2744

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 503  gatgtaatccctgtacatctccagtatctcattgtggctcaccacacc 550
            |||||| || ||||||||||| || ||||| |||||||||||||||||
Sbjct: 2011 gatgtagtctctgtacatctctaggatctcgttgtggctcaccacacc 1964
to top
>ref|NM_001036220.1| Arabidopsis thaliana RHM1; NAD binding / catalytic AT1G78570 (RHM1)
            transcript variant AT1G78570.2 mRNA, complete cds
          Length = 2912

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 503  gatgtaatccctgtacatctccagtatctcattgtggctcaccacacc 550
            |||||| || ||||||||||| || ||||| |||||||||||||||||
Sbjct: 2145 gatgtagtctctgtacatctctaggatctcgttgtggctcaccacacc 2098
to top
>gb|AC007260.2| Arabidopsis thaliana chromosome I BAC T30F21 genomic sequence, complete
             sequence
          Length = 78378

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                             
Query: 503   gatgtaatccctgtacatctccagtatctcattgtggctcaccacacc 550
             |||||| || ||||||||||| || ||||| |||||||||||||||||
Sbjct: 38715 gatgtagtctctgtacatctctaggatctcgttgtggctcaccacacc 38762
to top
>gb|AY081471.1| Arabidopsis thaliana similar to dTDP-D-glucose 4,6-dehydratase
            (At1g78570) mRNA, complete cds
          Length = 2126

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 503  gatgtaatccctgtacatctccagtatctcattgtggctcaccacacc 550
            |||||| || ||||||||||| || ||||| |||||||||||||||||
Sbjct: 1836 gatgtagtctctgtacatctctaggatctcgttgtggctcaccacacc 1789
to top
>gb|AY042833.1| Arabidopsis thaliana Similar to dTDP-D-glucose 4,6-dehydratase
            (T30F21.10) mRNA, complete cds
          Length = 2347

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 503  gatgtaatccctgtacatctccagtatctcattgtggctcaccacacc 550
            |||||| || ||||||||||| || ||||| |||||||||||||||||
Sbjct: 2011 gatgtagtctctgtacatctctaggatctcgttgtggctcaccacacc 1964
to top
>emb|BX815784.1|CNS0AAK8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS94ZD06 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 2309

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 503  gatgtaatccctgtacatctccagtatctcattgtggctcaccacacc 550
            |||||| || ||||||||||| || ||||| |||||||||||||||||
Sbjct: 2012 gatgtagtctctgtacatctctaggatctcgttgtggctcaccacacc 1965
to top
>ref|NM_104978.3| Arabidopsis thaliana NRS/ER (NUCLEOTIDE-RHAMNOSE
           SYNTHASE/EPIMERASE-REDUCTASE) AT1G63000 (NRS/ER) mRNA,
           complete cds
          Length = 1265

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 105/131 (80%)
 Strand = Plus / Minus

                                                                       
Query: 420 tcaagttcattgttgctcctcggtgctactatgaccttggcttgctcctccaagttgaag 479
           ||||| |||||||| ||||| || || || || || || ||||| ||||||||  |||||
Sbjct: 920 tcaagctcattgttactccttggcgccacaatcactttagcttgttcctccaatgtgaag 861

                                                                       
Query: 480 ttcttccaggagaagtttggatcgatgtaatccctgtacatctccagtatctcattgtgg 539
           |||||||| |  ||  | || || ||||| || |||||||||||||  ||||| ||||||
Sbjct: 860 ttcttccaagtaaaactcgggtcaatgtagtctctgtacatctccaagatctcgttgtgg 801

                      
Query: 540 ctcaccacacc 550
           ||||| |||||
Sbjct: 800 ctcacaacacc 790
to top
>gb|AY513232.1| Arabidopsis thaliana 3,5-epimerase/4-reductase (NRS/ER) mRNA,
           complete cds
          Length = 906

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 105/131 (80%)
 Strand = Plus / Minus

                                                                       
Query: 420 tcaagttcattgttgctcctcggtgctactatgaccttggcttgctcctccaagttgaag 479
           ||||| |||||||| ||||| || || || || || || ||||| ||||||||  |||||
Sbjct: 803 tcaagctcattgttactccttggcgccacaatcactttagcttgttcctccaatgtgaag 744

                                                                       
Query: 480 ttcttccaggagaagtttggatcgatgtaatccctgtacatctccagtatctcattgtgg 539
           |||||||| |  ||  | || || ||||| || |||||||||||||  ||||| ||||||
Sbjct: 743 ttcttccaagtaaaactcgggtcaatgtagtctctgtacatctccaagatctcgttgtgg 684

                      
Query: 540 ctcaccacacc 550
           ||||| |||||
Sbjct: 683 ctcacaacacc 673
to top
>gb|AF332445.1| Arabidopsis thaliana clone C00141 (e) unknown protein (At1g63000)
           mRNA, complete cds
          Length = 906

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 105/131 (80%)
 Strand = Plus / Minus

                                                                       
Query: 420 tcaagttcattgttgctcctcggtgctactatgaccttggcttgctcctccaagttgaag 479
           ||||| |||||||| ||||| || || || || || || ||||| ||||||||  |||||
Sbjct: 803 tcaagctcattgttactccttggcgccacaatcactttagcttgttcctccaatgtgaag 744

                                                                       
Query: 480 ttcttccaggagaagtttggatcgatgtaatccctgtacatctccagtatctcattgtgg 539
           |||||||| |  ||  | || || ||||| || |||||||||||||  ||||| ||||||
Sbjct: 743 ttcttccaagtaaaactcgggtcaatgtagtctctgtacatctccaagatctcgttgtgg 684

                      
Query: 540 ctcaccacacc 550
           ||||| |||||
Sbjct: 683 ctcacaacacc 673
to top
>gb|AF387005.1|AF387005 Arabidopsis thaliana Unknown protein (F16P17.17) mRNA, complete cds
          Length = 1230

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 105/131 (80%)
 Strand = Plus / Minus

                                                                       
Query: 420 tcaagttcattgttgctcctcggtgctactatgaccttggcttgctcctccaagttgaag 479
           ||||| |||||||| ||||| || || || || || || ||||| ||||||||  |||||
Sbjct: 880 tcaagctcattgttactccttggcgccacaatcactttagcttgttcctccaatgtgaag 821

                                                                       
Query: 480 ttcttccaggagaagtttggatcgatgtaatccctgtacatctccagtatctcattgtgg 539
           |||||||| |  ||  | || || ||||| || |||||||||||||  ||||| ||||||
Sbjct: 820 ttcttccaagtaaaactcgggtcaatgtagtctctgtacatctccaagatctcgttgtgg 761

                      
Query: 540 ctcaccacacc 550
           ||||| |||||
Sbjct: 760 ctcacaacacc 750
to top
>emb|BX815284.1|CNS0AAH5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS49ZH01 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1224

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 105/131 (80%)
 Strand = Plus / Minus

                                                                       
Query: 420 tcaagttcattgttgctcctcggtgctactatgaccttggcttgctcctccaagttgaag 479
           ||||| |||||||| ||||| || || || || || || ||||| ||||||||  |||||
Sbjct: 920 tcaagctcattgttactccttggcgccacaatcactttagcttgttcctccaatgtgaag 861

                                                                       
Query: 480 ttcttccaggagaagtttggatcgatgtaatccctgtacatctccagtatctcattgtgg 539
           |||||||| |  ||  | || || ||||| || |||||||||||||  ||||| ||||||
Sbjct: 860 ttcttccaagtaaaactcgggtcaatgtagtctctgtacatctccaagatctcgttgtgg 801

                      
Query: 540 ctcaccacacc 550
           ||||| |||||
Sbjct: 800 ctcacaacacc 790
to top
>gb|AY088123.1| Arabidopsis thaliana clone 41505 mRNA, complete sequence
          Length = 1211

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 105/131 (80%)
 Strand = Plus / Minus

                                                                       
Query: 420 tcaagttcattgttgctcctcggtgctactatgaccttggcttgctcctccaagttgaag 479
           ||||| |||||||| ||||| || || || || || || ||||| ||||||||  |||||
Sbjct: 878 tcaagctcattgttactccttggcgccacaatcactttagcttgttcctccaatgtgaag 819

                                                                       
Query: 480 ttcttccaggagaagtttggatcgatgtaatccctgtacatctccagtatctcattgtgg 539
           |||||||| |  ||  | || || ||||| || |||||||||||||  ||||| ||||||
Sbjct: 818 ttcttccaagtaaaactcgggtcaatgtagtctctgtacatctccaagatctcgttgtgg 759

                      
Query: 540 ctcaccacacc 550
           ||||| |||||
Sbjct: 758 ctcacaacacc 748
to top
>gb|AC011000.3|F16P17 Sequence of BAC F16P17 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 98412

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 105/131 (80%)
 Strand = Plus / Minus

                                                                         
Query: 420   tcaagttcattgttgctcctcggtgctactatgaccttggcttgctcctccaagttgaag 479
             ||||| |||||||| ||||| || || || || || || ||||| ||||||||  |||||
Sbjct: 70123 tcaagctcattgttactccttggcgccacaatcactttagcttgttcctccaatgtgaag 70064

                                                                         
Query: 480   ttcttccaggagaagtttggatcgatgtaatccctgtacatctccagtatctcattgtgg 539
             |||||||| |  ||  | || || ||||| || |||||||||||||  ||||| ||||||
Sbjct: 70063 ttcttccaagtaaaactcgggtcaatgtagtctctgtacatctccaagatctcgttgtgg 70004

                        
Query: 540   ctcaccacacc 550
             ||||| |||||
Sbjct: 70003 ctcacaacacc 69993
to top
>gb|AY103981.1| Zea mays PCO118173 mRNA sequence
          Length = 1418

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 426  tcattgttgctcctcggtgctactatgaccttggcttgctc 466
            ||||||||||| || ||||| ||||||||||||| ||||||
Sbjct: 1095 tcattgttgcttctaggtgcgactatgaccttggattgctc 1055



 Score = 48.1 bits (24), Expect = 0.031
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 514  tgtacatctccagtatctcattgtggct 541
            ||||||||||||| ||||||||||||||
Sbjct: 1007 tgtacatctccagaatctcattgtggct 980
to top
>gb|AC182659.2| Populus trichocarpa clone Pop1-125A14, complete sequence
          Length = 75970

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                         
Query: 426   tcattgttgctcctcggtgctactatgaccttggcttgctcctc 469
             |||||||||||||  || || ||||| |||||||||||||||||
Sbjct: 28721 tcattgttgctccggggggcaactatcaccttggcttgctcctc 28678



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 514   tgtacatctccagtatctcattgtggctcaccacacca 551
             ||||||||||||  |||||||| |||||||| ||||||
Sbjct: 28633 tgtacatctccaaaatctcattatggctcacaacacca 28596
to top
>ref|NM_112340.2| Arabidopsis thaliana RHM3; catalytic AT3G14790 (RHM3) mRNA, complete
            cds
          Length = 2332

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 501  tcgatgtaatccctgtacatctccagtatctcattgtggctcaccac 547
            |||||||||  | |||||||||| | |||||| ||||||||||||||
Sbjct: 1976 tcgatgtaactcttgtacatctctaatatctcgttgtggctcaccac 1930
to top
>gb|AY142060.1| Arabidopsis thaliana At3g14790/T21E2_4 mRNA, complete cds
          Length = 1995

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 501  tcgatgtaatccctgtacatctccagtatctcattgtggctcaccac 547
            |||||||||  | |||||||||| | |||||| ||||||||||||||
Sbjct: 1823 tcgatgtaactcttgtacatctctaatatctcgttgtggctcaccac 1777
to top
>gb|AY078958.1| Arabidopsis thaliana AT3g14790/T21E2_4 mRNA, complete cds
          Length = 2332

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 501  tcgatgtaatccctgtacatctccagtatctcattgtggctcaccac 547
            |||||||||  | |||||||||| | |||||| ||||||||||||||
Sbjct: 1976 tcgatgtaactcttgtacatctctaatatctcgttgtggctcaccac 1930
to top
>dbj|AP002061.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone: T21E2
          Length = 47466

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                            
Query: 501   tcgatgtaatccctgtacatctccagtatctcattgtggctcaccac 547
             |||||||||  | |||||||||| | |||||| ||||||||||||||
Sbjct: 10201 tcgatgtaactcttgtacatctctaatatctcgttgtggctcaccac 10155
to top
>gb|DQ378291.1| Drosophila virilis strain Tucson 15010-1001.10 chromosome 4 fosmid
             47B4, complete sequence
          Length = 37265

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 341   atttggtttgaaaacgtttttg 362
             ||||||||||||||||||||||
Sbjct: 14651 atttggtttgaaaacgtttttg 14672
to top
>emb|AL772303.11| Mouse DNA sequence from clone RP23-185P20 on chromosome 2, complete
             sequence
          Length = 202001

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 332   tgtcttctgatttggtttgaaa 353
             ||||||||||||||||||||||
Sbjct: 28867 tgtcttctgatttggtttgaaa 28888
to top
>ref|NM_196493.1| Oryza sativa (japonica cultivar-group) contains similarity to histone
            acetyltransferase GCN5 (OSJNBa0032I20.6), mRNA
          Length = 1752

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 320  tcaagccttggatgtcttctg 340
            |||||||||||||||||||||
Sbjct: 1120 tcaagccttggatgtcttctg 1100
to top
>emb|AL355595.10| Human DNA sequence from clone RP11-276G3 on chromosome 13 Contains a
             novel gene and a novel pseudogene, complete sequence
          Length = 119343

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 4     actttataaaaaatgatgcactcca 28
             |||||| ||||||||||||||||||
Sbjct: 46627 actttaaaaaaaatgatgcactcca 46651
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 320      tcaagccttggatgtcttctg 340
                |||||||||||||||||||||
Sbjct: 14038040 tcaagccttggatgtcttctg 14038060
to top
>gb|AF229187.1|AF229187 Oryza sativa subsp. japonica BAC clone nbxb0032I20, complete sequence
          Length = 144651

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 320   tcaagccttggatgtcttctg 340
             |||||||||||||||||||||
Sbjct: 54169 tcaagccttggatgtcttctg 54189
to top
>dbj|AK111779.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078H10, full
            insert sequence
          Length = 1691

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 320  tcaagccttggatgtcttctg 340
            |||||||||||||||||||||
Sbjct: 1235 tcaagccttggatgtcttctg 1215
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 320      tcaagccttggatgtcttctg 340
                |||||||||||||||||||||
Sbjct: 14046282 tcaagccttggatgtcttctg 14046302
to top
>gb|AC153378.4| Mus musculus 6 BAC RP23-106C18 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 199980

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 461   ttgctcctccaagttgaagt 480
             ||||||||||||||||||||
Sbjct: 29217 ttgctcctccaagttgaagt 29198
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 514     tgtacatctccagtatctcattgtggct 541
               ||||||||||||| ||||| ||||||||
Sbjct: 9420169 tgtacatctccaggatctcgttgtggct 9420142
to top
>gb|AC133514.4| Mus musculus BAC clone RP23-212F6 from chromosome 5, complete sequence
          Length = 208083

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 26     ccagttatgtgatagtacaa 45
              ||||||||||||||||||||
Sbjct: 151512 ccagttatgtgatagtacaa 151531
to top
>gb|AC123844.4| Mus musculus BAC clone RP23-416P14 from chromosome 7, complete sequence
          Length = 198721

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 145   gacaagggatggtgacttcc 164
             ||||||||||||||||||||
Sbjct: 48446 gacaagggatggtgacttcc 48465
to top
>gb|AC116659.3| Mus musculus BAC clone RP24-147E15 from 7, complete sequence
          Length = 140476

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 145   gacaagggatggtgacttcc 164
             ||||||||||||||||||||
Sbjct: 95685 gacaagggatggtgacttcc 95704
to top
>emb|CR533575.5| Zebrafish DNA sequence from clone CH211-215M13 in linkage group 16,
             complete sequence
          Length = 115032

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 514   tgtacatctccagtatctcattgt 537
             |||||||||||||| |||||||||
Sbjct: 26279 tgtacatctccagtttctcattgt 26256
to top
>emb|AL627362.2|CNS07TIX DNA centromeric region sequence from BAC DP15B03, DP38F06 of chromosome
             5 of Podospora anserina
          Length = 156244

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 453   accttggcttgctcctccaagttgaagttcttccag 488
             ||||||||||||||||| | | | ||||||||||||
Sbjct: 61190 accttggcttgctcctcgaggctaaagttcttccag 61225
to top
>emb|AL161500.2|ATCHRIV12 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 12
          Length = 199759

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 342    tttggtttgaaaacgtttttgatc 365
              |||||| |||||||||||||||||
Sbjct: 147969 tttggtatgaaaacgtttttgatc 147992
to top
>gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0002D01, from chromosome 3, complete sequence
          Length = 187589

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 514    tgtacatctccagtatctcattgtggct 541
              ||||||||||||| ||||| ||||||||
Sbjct: 117569 tgtacatctccaggatctcgttgtggct 117542
to top
>gb|AY279847.1| Pteragogus cryptus Tmo-4C4 (Tmo-4C4) gene, partial cds
          Length = 475

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 141 taatgacaagggatggtgac 160
           ||||||||||||||||||||
Sbjct: 114 taatgacaagggatggtgac 133
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 514     tgtacatctccagtatctcattgtggct 541
               ||||||||||||| ||||| ||||||||
Sbjct: 9418290 tgtacatctccaggatctcgttgtggct 9418263
to top
>gb|AC128737.4| Mus musculus BAC clone RP23-99A8 from chromosome unknown, complete
              sequence
          Length = 211960

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 165    tataagaaactatctcctgc 184
              ||||||||||||||||||||
Sbjct: 157626 tataagaaactatctcctgc 157645
to top
>gb|AC159742.1| Ornithorhynchus anatinus chromosome UNK clone OABb-263A1, complete
             sequence
          Length = 150582

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 36    gatagtacaatacaacagag 55
             ||||||||||||||||||||
Sbjct: 55765 gatagtacaatacaacagag 55746
to top
>gb|AC155653.4| Mus musculus 6 BAC RP24-503P15 (Roswell Park Cancer Institute
            (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 136868

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 461  ttgctcctccaagttgaagt 480
            ||||||||||||||||||||
Sbjct: 1806 ttgctcctccaagttgaagt 1825
to top
>emb|BX649615.6| Mouse DNA sequence from clone RP23-273I8 on chromosome X, complete
             sequence
          Length = 88938

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 165   tataagaaactatctcctgc 184
             ||||||||||||||||||||
Sbjct: 76626 tataagaaactatctcctgc 76607
to top
>dbj|AP005299.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1789_D08
          Length = 128673

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    aggatacaatagcaacacca 115
             ||||||||||||||||||||
Sbjct: 83843 aggatacaatagcaacacca 83862
to top
>dbj|AK103544.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132E05, full
            insert sequence
          Length = 2499

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 514  tgtacatctccagtatctcattgtggct 541
            ||||||||||||| ||||| ||||||||
Sbjct: 1989 tgtacatctccaggatctcgttgtggct 1962
to top
>dbj|AK064303.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-B05, full
            insert sequence
          Length = 1892

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 514  tgtacatctccagtatctcattgtggct 541
            ||||||||||||| ||||| ||||||||
Sbjct: 1380 tgtacatctccaggatctcgttgtggct 1353
to top
>gb|AF076243.1|AF076243 Arabidopsis thaliana BAC T26N6 from chromosome IV at 19.3 cM, complete
             sequence
          Length = 99384

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 342   tttggtttgaaaacgtttttgatc 365
             |||||| |||||||||||||||||
Sbjct: 47623 tttggtatgaaaacgtttttgatc 47646
to top
>gb|AC006227.1|AC006227 Homo sapiens, clone hRPK.16_A_1, complete sequence
          Length = 153337

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 310   ctccatttggtcaagccttg 329
             ||||||||||||||||||||
Sbjct: 46501 ctccatttggtcaagccttg 46520
to top
>gb|AC164420.4| Mus musculus chromosome 8, clone RP24-388L13, complete sequence
          Length = 174120

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 455   cttggcttgctcctccaagt 474
             ||||||||||||||||||||
Sbjct: 12112 cttggcttgctcctccaagt 12093
to top
>gb|AC140446.5| Mus musculus BAC clone RP24-114J11 from chromosome 8, complete sequence
          Length = 152392

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 455   cttggcttgctcctccaagt 474
             ||||||||||||||||||||
Sbjct: 80394 cttggcttgctcctccaagt 80375
to top
>gb|AC127693.4| Mus musculus BAC clone RP23-135G19 from 17, complete sequence
          Length = 223894

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 379    ttgacagaagttctgggaac 398
              ||||||||||||||||||||
Sbjct: 125189 ttgacagaagttctgggaac 125208


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,091,154
Number of Sequences: 3902068
Number of extensions: 5091154
Number of successful extensions: 122191
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 121807
Number of HSP's gapped (non-prelim): 381
length of query: 553
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 530
effective length of database: 17,143,297,704
effective search space: 9085947783120
effective search space used: 9085947783120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top