ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags17c20 |
|---|---|
| Clone Library Name | barley_pub |
>MYH8_MOUSE (P13542) Myosin-8 (Myosin heavy chain, skeletal muscle, perinatal)| (MyHC-perinatal) Length = 1937 Score = 34.3 bits (77), Expect = 0.33 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 3/87 (3%) Frame = -1 Query: 441 IKEHFLVTTELKFNCFLLMPIVDKLAALL---REDLESAFENDLDNILSVTRLRHSLGQK 271 +KE T E + N L +VDKL A + + E A E N+ +L+H L + Sbjct: 1850 VKELTYQTEEDRKNVLRLQDLVDKLQAKVKSYKRQAEEAEEQSNANLAKFRKLQHELEEA 1909 Query: 270 KRVLEIELKQMKCLKEKFTEISKKLNS 190 + +I Q+ L+ K E+ K+++ Sbjct: 1910 EERADIAESQVNKLRVKSREVHTKISA 1936
>MYH2_HUMAN (Q9UKX2) Myosin heavy chain, skeletal muscle, adult 2 (Myosin heavy| chain IIa) (MyHC-IIa) Length = 1941 Score = 33.9 bits (76), Expect = 0.43 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 3/87 (3%) Frame = -1 Query: 441 IKEHFLVTTELKFNCFLLMPIVDKLAALL---REDLESAFENDLDNILSVTRLRHSLGQK 271 +KE T E + N L +VDKL A + + E A E N+ +L+H L + Sbjct: 1853 VKELTYQTEEDRKNILRLQDLVDKLQAKVKSYKRQAEEAEEQSNTNLAKFRKLQHELEEA 1912 Query: 270 KRVLEIELKQMKCLKEKFTEISKKLNS 190 + +I Q+ L+ K E+ K+ S Sbjct: 1913 EERADIAESQVNKLRVKSREVHTKVIS 1939
>MYH8_HUMAN (P13535) Myosin-8 (Myosin heavy chain, skeletal muscle, perinatal)| (MyHC-perinatal) Length = 1937 Score = 33.9 bits (76), Expect = 0.43 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 3/87 (3%) Frame = -1 Query: 441 IKEHFLVTTELKFNCFLLMPIVDKLAALL---REDLESAFENDLDNILSVTRLRHSLGQK 271 +KE T E + N L +VDKL A + + E A E N+ +L+H L + Sbjct: 1850 VKELTYQTEEDRKNVLRLQDLVDKLQAKVKSYKRQAEEAEEQSNANLSKFRKLQHELEEA 1909 Query: 270 KRVLEIELKQMKCLKEKFTEISKKLNS 190 + +I Q+ L+ K E+ K+++ Sbjct: 1910 EERADIAESQVNKLRVKSREVHTKISA 1936
>MYH8_RAT (P04462) Myosin-8 (Myosin heavy chain, skeletal muscle, perinatal)| (MyHC-perinatal) (Fragment) Length = 257 Score = 33.9 bits (76), Expect = 0.43 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 3/87 (3%) Frame = -1 Query: 441 IKEHFLVTTELKFNCFLLMPIVDKLAALL---REDLESAFENDLDNILSVTRLRHSLGQK 271 +KE T E + N L +VDKL A + + E A E N+ +L+H L + Sbjct: 170 VKELTYQTEEDRKNVLRLQDLVDKLQAKVKSYKRQAEEAEEQSNVNLAKFRKLQHELEEA 229 Query: 270 KRVLEIELKQMKCLKEKFTEISKKLNS 190 + +I Q+ L+ K E+ K+++ Sbjct: 230 EERADIAESQVNKLRVKSREVHTKISA 256
>MYH1_HUMAN (P12882) Myosin-1 (Myosin heavy chain, skeletal muscle, adult 1)| (Myosin heavy chain IIx/d) (MyHC-IIx/d) Length = 1939 Score = 33.5 bits (75), Expect = 0.57 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 3/87 (3%) Frame = -1 Query: 441 IKEHFLVTTELKFNCFLLMPIVDKLAALL---REDLESAFENDLDNILSVTRLRHSLGQK 271 +KE T E + N L +VDKL A + + E A E N+ R++H L + Sbjct: 1851 VKELTYQTEEDRKNILRLQDLVDKLQAKVKSYKRQAEEAEEQSNVNLSKFRRIQHELEEA 1910 Query: 270 KRVLEIELKQMKCLKEKFTEISKKLNS 190 + +I Q+ L+ K E+ K+ S Sbjct: 1911 EERADIAESQVNKLRVKSREVHTKIIS 1937
>ALBUB_XENLA (P14872) Serum albumin B precursor (74 kDa serum albumin)| Length = 607 Score = 33.1 bits (74), Expect = 0.74 Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 1/93 (1%) Frame = -1 Query: 447 HGIKEHFLVTTELKFNCFLLMPIVDKL-AALLREDLESAFENDLDNILSVTRLRHSLGQK 271 H EH + E + C LL D L +A + E+ + + +L++T+ H L + Sbjct: 131 HRDHEHTSIKPEPEETCKLLKEHPDDLLSAFIHEEARNHPDLYPPAVLALTKQYHKLAE- 189 Query: 270 KRVLEIELKQMKCLKEKFTEISKKLNSLQVRQH 172 E E K+ KC EK ++ K+ +S++ +QH Sbjct: 190 -HCCEEEDKE-KCFSEKMKQLMKQSHSIEDKQH 220
>RAD50_HUMAN (Q92878) DNA repair protein RAD50 (EC 3.6.-.-) (hRAD50)| Length = 1312 Score = 32.0 bits (71), Expect = 1.7 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 10/63 (15%) Frame = -1 Query: 336 AFENDLDNILSVTR----------LRHSLGQKKRVLEIELKQMKCLKEKFTEISKKLNSL 187 A + D I S TR +R + GQK + ++ELK +K KEK EI ++ S Sbjct: 171 ALKQKFDEIFSATRYIKALETLRQVRQTQGQKVKEYQMELKYLKQYKEKACEIRDQITSK 230 Query: 186 QVR 178 + + Sbjct: 231 EAQ 233
>MYH4_RABIT (Q28641) Myosin-4 (Myosin heavy chain, skeletal muscle, juvenile)| Length = 1938 Score = 31.6 bits (70), Expect = 2.2 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 3/87 (3%) Frame = -1 Query: 441 IKEHFLVTTELKFNCFLLMPIVDKLAALL---REDLESAFENDLDNILSVTRLRHSLGQK 271 +KE T E + N L +VDKL A + + E A E N+ +L+H L + Sbjct: 1850 VKELTYQTEEDRKNVLRLQDLVDKLQAKVKSYKRQAEEAEEQCNINLSKFRKLQHELEEA 1909 Query: 270 KRVLEIELKQMKCLKEKFTEISKKLNS 190 + +I Q+ L+ K E+ K+ S Sbjct: 1910 EERADIAESQVNKLRVKSREVHTKVIS 1936
>MYH4_HUMAN (Q9Y623) Myosin-4 (Myosin heavy chain, skeletal muscle, fetal)| (Myosin heavy chain IIb) (MyHC-IIb) Length = 1939 Score = 31.6 bits (70), Expect = 2.2 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 3/87 (3%) Frame = -1 Query: 441 IKEHFLVTTELKFNCFLLMPIVDKLAALL---REDLESAFENDLDNILSVTRLRHSLGQK 271 +KE T E + N L +VDKL + + E A E N+ +L+H L + Sbjct: 1851 VKELTYQTEEDRKNILRLQDLVDKLQTKVKAYKRQAEEAEEQSNVNLAKFRKLQHELEEA 1910 Query: 270 KRVLEIELKQMKCLKEKFTEISKKLNS 190 + +I Q+ L+ K E+ K+ S Sbjct: 1911 EERADIAESQVNKLRVKSREVHTKVIS 1937
>MYH1_MOUSE (Q5SX40) Myosin-1 (Myosin heavy chain, skeletal muscle, adult 1)| Length = 1942 Score = 31.6 bits (70), Expect = 2.2 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 3/87 (3%) Frame = -1 Query: 441 IKEHFLVTTELKFNCFLLMPIVDKLAALL---REDLESAFENDLDNILSVTRLRHSLGQK 271 +KE T E + N L +VDKL + + + E A E N+ +++H L + Sbjct: 1854 VKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEEQSNVNLAKFRKIQHELEEA 1913 Query: 270 KRVLEIELKQMKCLKEKFTEISKKLNS 190 + +I Q+ L+ K E+ K+ S Sbjct: 1914 EERADIAESQVNKLRVKSREVHTKIIS 1940
>RAPA_VIBCH (Q9KP70) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 969 Score = 31.6 bits (70), Expect = 2.2 Identities = 23/110 (20%), Positives = 56/110 (50%) Frame = -1 Query: 510 WNRRLAPSSERLVYALVHQIFHGIKEHFLVTTELKFNCFLLMPIVDKLAALLREDLESAF 331 +NR+L+P + L LV + H + H L+T + P V + + D++ + Sbjct: 862 FNRQLSPVNRHLASKLVSSVQHDV--HRLITASET----AVEPRVSAIREQAQRDMQQSL 915 Query: 330 ENDLDNILSVTRLRHSLGQKKRVLEIELKQMKCLKEKFTEISKKLNSLQV 181 ++L+ +L++ + ++ ++ +E+ +Q+K L + +L+SL++ Sbjct: 916 NSELERLLALKAVNPNIRDEE--IEVLDQQIKELTGYIAQAQYQLDSLRL 963
>RAD50_THEMA (Q9X1X1) Probable DNA double-strand break repair rad50 ATPase| Length = 852 Score = 31.6 bits (70), Expect = 2.2 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 4/70 (5%) Frame = -1 Query: 378 VDKLAALLREDLESAFENDLDNILS----VTRLRHSLGQKKRVLEIELKQMKCLKEKFTE 211 + L AL + ENDL+ + S V+ + L +K+ L+ E +Q+K L EK+ E Sbjct: 188 ISSLQALYTAIWKYLEENDLEVLKSELKTVSEKKKELLKKREELQKEEEQLKRLLEKYRE 247 Query: 210 ISKKLNSLQV 181 + KK L+V Sbjct: 248 LVKKKERLRV 257 Score = 30.8 bits (68), Expect = 3.7 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 2/72 (2%) Frame = -1 Query: 351 EDLESAFENDLDNILSVTRLRHSLGQKKRVLEIELKQMK-CLKEKFTEISKKLNSL-QVR 178 EDLE + + + RHS+ QK ++++ Q++ LKE EI K +L + R Sbjct: 519 EDLEEKLDEKRKKLRKIEEERHSISQKITAADVQISQIENQLKEIKGEIEAKRETLKEQR 578 Query: 177 QHA*GREAEYFD 142 + ++++FD Sbjct: 579 EEMDQLKSDFFD 590
>ATRIP_HUMAN (Q8WXE1) ATR-interacting protein (ATM and Rad3-related-interacting| protein) Length = 791 Score = 31.6 bits (70), Expect = 2.2 Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 17/159 (10%) Frame = -1 Query: 609 RPKGELKSSHPSDSNPSGGVSEMRLVDLLD-STLWNRRLA--PSSERLVYA--LVHQIFH 445 R +G ++ P +P G + DL + TL ++ L+ P++ R V + VH++ Sbjct: 33 RARGFSAAAAPDPDDPFGAHGDFTADDLEELDTLASQALSQCPAAARDVSSDHKVHRLLD 92 Query: 444 GIKEH----FLVTTELKFNCFLLMPIVDKLAALLREDLESAFENDLDNILSVTRLRHSLG 277 G+ ++ T +K N L ++ L+E ++ E L + LR SL Sbjct: 93 GMSKNPSGKNRETVPIKDNFEL--EVLQAQYKELKEKMKVMEEEVLIKNGEIKILRDSLH 150 Query: 276 QKKRVLE--------IELKQMKCLKEKFTEISKKLNSLQ 184 Q + VLE +E ++ + L +K E SKKL SLQ Sbjct: 151 QTESVLEEQRRSHFLLEQEKTQALSDKEKEFSKKLQSLQ 189
>ATRIP_MOUSE (Q8BMG1) ATR-interacting protein (ATM and Rad3-related-interacting| protein) Length = 785 Score = 31.2 bits (69), Expect = 2.8 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Frame = -1 Query: 357 LREDLESAFENDLDNILSVTRLRHSLGQKKRVLE--------IELKQMKCLKEKFTEISK 202 L+E L++ E L + LR SL Q + VLE +E ++ + L EK E S+ Sbjct: 124 LKEKLKAMEEEILIKNGEIKILRDSLRQTESVLEEQKRSHFLLEQEKTQALSEKEKEFSR 183 Query: 201 KLNSLQ 184 KL SLQ Sbjct: 184 KLQSLQ 189
>K2C8_RAT (Q10758) Keratin, type II cytoskeletal 8 (Cytokeratin-8) (CK-8)| (Keratin-8) (K8) (Cytokeratin endo A) Length = 482 Score = 30.8 bits (68), Expect = 3.7 Identities = 17/46 (36%), Positives = 29/46 (63%) Frame = -1 Query: 354 REDLESAFENDLDNILSVTRLRHSLGQKKRVLEIELKQMKCLKEKF 217 R ++++ FE+ ++N+ R +LGQ+K LE+EL M+ L E F Sbjct: 132 RSNMDNMFESYINNL---RRQLEALGQEKLKLEVELGNMQGLVEDF 174
>MYSS_RABIT (P02562) Myosin heavy chain, skeletal muscle (Fragments)| Length = 1084 Score = 30.8 bits (68), Expect = 3.7 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 3/87 (3%) Frame = -1 Query: 441 IKEHFLVTTELKFNCFLLMPIVDKLAALL---REDLESAFENDLDNILSVTRLRHSLGQK 271 +KE T E + N L +VDKL + + + E A E N+ +L+H L + Sbjct: 996 VKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEEQSNINLSKFRKLQHELEEA 1055 Query: 270 KRVLEIELKQMKCLKEKFTEISKKLNS 190 + +I Q+ L+ K ++ K+ S Sbjct: 1056 EERADIAESQVNKLRVKSRDVHSKVIS 1082
>MYH4_MOUSE (Q5SX39) Myosin-4 (Myosin heavy chain, skeletal muscle, fetal)| Length = 1939 Score = 30.8 bits (68), Expect = 3.7 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 3/87 (3%) Frame = -1 Query: 441 IKEHFLVTTELKFNCFLLMPIVDKLAALL---REDLESAFENDLDNILSVTRLRHSLGQK 271 +KE T E + N L +VDKL + + E A E N+ +++H L + Sbjct: 1851 VKELTYQTEEDRKNVLRLQDLVDKLQTKVKAYKRQAEEAEEQSNVNLAKFRKIQHELEEA 1910 Query: 270 KRVLEIELKQMKCLKEKFTEISKKLNS 190 + +I Q+ L+ K E+ K+ S Sbjct: 1911 EERADIAESQVNKLRVKSREVHTKVIS 1937
>1B46_HUMAN (P30484) HLA class I histocompatibility antigen, B-46 alpha chain| precursor (MHC class I antigen B*46) (Bw-46) Length = 362 Score = 30.8 bits (68), Expect = 3.7 Identities = 11/30 (36%), Positives = 14/30 (46%) Frame = -2 Query: 524 WTARSGTEGWRPHLSDLCMHWFTRFFMGSK 435 W A E WR +L LC+ W R+ K Sbjct: 171 WEAAREAEQWRAYLEGLCVEWLRRYLENGK 200
>1B15_HUMAN (P30464) HLA class I histocompatibility antigen, B-15 alpha chain| precursor (MHC class I antigen B*15) Length = 362 Score = 30.8 bits (68), Expect = 3.7 Identities = 11/30 (36%), Positives = 14/30 (46%) Frame = -2 Query: 524 WTARSGTEGWRPHLSDLCMHWFTRFFMGSK 435 W A E WR +L LC+ W R+ K Sbjct: 171 WEAAREAEQWRAYLEGLCVEWLRRYLENGK 200
>RAD50_MOUSE (P70388) DNA repair protein RAD50 (EC 3.6.-.-) (mRad50)| Length = 1312 Score = 30.4 bits (67), Expect = 4.8 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 10/63 (15%) Frame = -1 Query: 336 AFENDLDNILSVTR----------LRHSLGQKKRVLEIELKQMKCLKEKFTEISKKLNSL 187 A + D I S TR +R + GQK + + ELK +K KEK EI ++ S Sbjct: 171 ALKQKFDEIFSATRYIKALDTLRQVRQTQGQKVKECQTELKYLKQNKEKACEIRDQITSK 230 Query: 186 QVR 178 + + Sbjct: 231 EAQ 233
>SMC4_HUMAN (Q9NTJ3) Structural maintenance of chromosomes 4-like 1 protein| (Chromosome-associated polypeptide C) (hCAP-C) (XCAP-C homolog) Length = 1288 Score = 30.0 bits (66), Expect = 6.3 Identities = 17/64 (26%), Positives = 37/64 (57%) Frame = -1 Query: 378 VDKLAALLREDLESAFENDLDNILSVTRLRHSLGQKKRVLEIELKQMKCLKEKFTEISKK 199 ++K+ + E+ E + DL+++ +L+H+ + K+ LE +L++ K E+F I K Sbjct: 376 LNKITKFIEENKEKFTQLDLEDVQVREKLKHATSKAKK-LEKQLQKDKEKVEEFKSIPAK 434 Query: 198 LNSL 187 N++ Sbjct: 435 SNNI 438
>HA1B_BOVIN (P13753) BOLA class I histocompatibility antigen, alpha chain BL3-7| precursor Length = 364 Score = 30.0 bits (66), Expect = 6.3 Identities = 11/34 (32%), Positives = 14/34 (41%) Frame = -2 Query: 524 WTARSGTEGWRPHLSDLCMHWFTRFFMGSKSIFL 423 W A E WR +L C+ W R+ K L Sbjct: 174 WEAAGAAETWRNYLEGECVEWLRRYLENGKDTLL 207 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 89,427,589 Number of Sequences: 219361 Number of extensions: 1747556 Number of successful extensions: 4603 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 4474 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4599 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6200242422 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
