| Clone Name | rbags16n19 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CR937029.1| M.truncatula DNA sequence from clone MTH2-105B15 on chromosome 3, complete sequence Length = 112155 Score = 42.1 bits (21), Expect = 0.53 Identities = 21/21 (100%) Strand = Plus / Plus Query: 62 tttttgtctccattgatatca 82 ||||||||||||||||||||| Sbjct: 75269 tttttgtctccattgatatca 75289
>emb|CR378661.1| M.truncatula DNA sequence from clone XX-10B15, complete sequence Length = 112155 Score = 42.1 bits (21), Expect = 0.53 Identities = 21/21 (100%) Strand = Plus / Plus Query: 62 tttttgtctccattgatatca 82 ||||||||||||||||||||| Sbjct: 75269 tttttgtctccattgatatca 75289
>emb|CT573027.7| M.truncatula DNA sequence from clone MTH2-40D16 on chromosome 3, complete sequence Length = 58256 Score = 42.1 bits (21), Expect = 0.53 Identities = 21/21 (100%) Strand = Plus / Minus Query: 62 tttttgtctccattgatatca 82 ||||||||||||||||||||| Sbjct: 38235 tttttgtctccattgatatca 38215
>ref|XM_716467.1| Candida albicans SC5314 putative mitochondrial protein Fmp47 (CaO19_3062), mRNA Length = 3540 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 tccattgatatcatcaaatt 89 |||||||||||||||||||| Sbjct: 173 tccattgatatcatcaaatt 154
>ref|XM_716196.1| Candida albicans SC5314 hypothetical protein (CaO19_10580), mRNA Length = 3540 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 tccattgatatcatcaaatt 89 |||||||||||||||||||| Sbjct: 173 tccattgatatcatcaaatt 154
>gb|AC095402.7| Rattus norvegicus 2 BAC CH230-7A22 (Children's Hospital Oakland Research Institute) complete sequence Length = 224026 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 aaagagctcaagaaaatccc 26 |||||||||||||||||||| Sbjct: 213186 aaagagctcaagaaaatccc 213167
>emb|CT010474.12| Mouse DNA sequence from clone RP23-199B14 on chromosome 12, complete sequence Length = 205340 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 cattgatatcatcaaattcc 91 |||||||||||||||||||| Sbjct: 51124 cattgatatcatcaaattcc 51143
>gb|AC131991.8| Mus musculus chromosome 12, clone RP24-190H17, complete sequence Length = 148426 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 cattgatatcatcaaattcc 91 |||||||||||||||||||| Sbjct: 136033 cattgatatcatcaaattcc 136052
>gb|AC154113.1| Medicago truncatula chromosome 2 BAC clone mte1-25a23, complete sequence Length = 42983 Score = 38.2 bits (19), Expect = 8.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 64 tttgtctccattgatatcatcaa 86 ||||| ||||||||||||||||| Sbjct: 40017 tttgtttccattgatatcatcaa 40039
>gb|AC160404.13| Mus musculus 10 BAC RP24-217L12 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 153457 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 72 cattgatatcatcaaattc 90 ||||||||||||||||||| Sbjct: 108020 cattgatatcatcaaattc 108002
>gb|AC153544.4| Mus musculus 10 BAC RP23-326C6 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 215036 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 72 cattgatatcatcaaattc 90 ||||||||||||||||||| Sbjct: 197515 cattgatatcatcaaattc 197533
>gb|AY145837.1| Mus musculus doublesex- and mab-3-related transcription factor 5 (Dmrt5) mRNA, complete cds Length = 2919 Score = 38.2 bits (19), Expect = 8.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 139 ctccgagtgcagctccatggctg 161 ||||||| ||||||||||||||| Sbjct: 310 ctccgagcgcagctccatggctg 288
>gb|AC114007.6| Mus musculus BAC clone RP23-187G1 from chromosome 14, complete sequence Length = 203514 Score = 38.2 bits (19), Expect = 8.3 Identities = 21/22 (95%) Strand = Plus / Plus Query: 50 aaatgggactgntttttgtctc 71 ||||||||||| |||||||||| Sbjct: 194929 aaatgggactggtttttgtctc 194950 Score = 38.2 bits (19), Expect = 8.3 Identities = 21/22 (95%) Strand = Plus / Plus Query: 50 aaatgggactgntttttgtctc 71 ||||||||||| |||||||||| Sbjct: 151207 aaatgggactgttttttgtctc 151228
>emb|AL731680.8| Human DNA sequence from clone RP11-152I12 on chromosome 10 Contains the 3' end of the FGFR2 gene for fibroblast growth factor receptor 2, complete sequence Length = 62988 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 4 agcaaagagctcaagaaaa 22 ||||||||||||||||||| Sbjct: 42367 agcaaagagctcaagaaaa 42385
>emb|AL132981.12|HSDJ80L13 Human DNA sequence from clone RP1-80L13 on chromosome 20 Contains STSs and GSSs, complete sequence Length = 112186 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 147 gcagctccatggctgccat 165 ||||||||||||||||||| Sbjct: 72554 gcagctccatggctgccat 72572
>emb|AL109611.10|HSDJ600E6 Human DNA sequence from clone RP4-600E6 on chromosome 20 Contains STSs and GSSs, complete sequence Length = 100204 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 4 agcaaagagctcaagaaaa 22 ||||||||||||||||||| Sbjct: 44134 agcaaagagctcaagaaaa 44152
>gb|AY309922.1| Homo sapiens BH3 interacting domain death agonist (BID) gene, complete cds Length = 42509 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 147 gcagctccatggctgccat 165 ||||||||||||||||||| Sbjct: 4113 gcagctccatggctgccat 4131
>emb|Z98551.1|PFMAL3P6 Plasmodium falciparum MAL3P6, complete sequence Length = 164399 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 72 cattgatatcatcaaattc 90 ||||||||||||||||||| Sbjct: 67129 cattgatatcatcaaattc 67147
>gb|AC154754.2| Mus musculus BAC clone RP24-405D2 from chromosome 14, complete sequence Length = 159848 Score = 38.2 bits (19), Expect = 8.3 Identities = 21/22 (95%) Strand = Plus / Minus Query: 50 aaatgggactgntttttgtctc 71 ||||||||||| |||||||||| Sbjct: 116850 aaatgggactgttttttgtctc 116829 Score = 38.2 bits (19), Expect = 8.3 Identities = 21/22 (95%) Strand = Plus / Minus Query: 50 aaatgggactgntttttgtctc 71 ||||||||||| |||||||||| Sbjct: 73128 aaatgggactggtttttgtctc 73107
>gb|AC135106.8| Pan troglodytes clone rp43-48a6, complete sequence Length = 181842 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 147 gcagctccatggctgccat 165 ||||||||||||||||||| Sbjct: 60842 gcagctccatggctgccat 60824
>gb|AC141866.11| Medicago truncatula clone mth2-12p22, complete sequence Length = 126907 Score = 38.2 bits (19), Expect = 8.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 64 tttgtctccattgatatcatcaa 86 ||||| ||||||||||||||||| Sbjct: 113264 tttgtttccattgatatcatcaa 113242
>gb|AC108053.3| Homo sapiens BAC clone RP11-342I1 from 4, complete sequence Length = 94040 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 17 agaaaatccccatgtgcaa 35 ||||||||||||||||||| Sbjct: 83018 agaaaatccccatgtgcaa 83036
>gb|AC099777.2| Homo sapiens chromosome 3 clone RP11-332H21, complete sequence Length = 206537 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 6 caaagagctcaagaaaatc 24 ||||||||||||||||||| Sbjct: 93767 caaagagctcaagaaaatc 93785
>gb|AC012690.17| Homo sapiens chromosome 10 clone RP11-127B19, complete sequence Length = 161276 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 4 agcaaagagctcaagaaaa 22 ||||||||||||||||||| Sbjct: 70776 agcaaagagctcaagaaaa 70794
>dbj|AK080774.1| Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length enriched library, clone:B130012I23 product:DOUBLESEX-MAB-3 (DM) DOMAIN (FRAGMENT) homolog [Homo sapiens], full insert sequence Length = 2946 Score = 38.2 bits (19), Expect = 8.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 139 ctccgagtgcagctccatggctg 161 ||||||| ||||||||||||||| Sbjct: 312 ctccgagcgcagctccatggctg 290
>gb|AC016026.15| Homo sapiens chromosome 22 clone b461k10 map 22q11, complete sequence Length = 187587 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 147 gcagctccatggctgccat 165 ||||||||||||||||||| Sbjct: 16840 gcagctccatggctgccat 16822
>gb|AC016025.14| Homo sapiens chromosome 22 clone b342k14 map 22q11, complete sequence Length = 180269 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 147 gcagctccatggctgccat 165 ||||||||||||||||||| Sbjct: 115983 gcagctccatggctgccat 115965
>gb|AC007845.14| Homo sapiens chromosome 22 clone 678g6 map 22q11, complete sequence Length = 134036 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 147 gcagctccatggctgccat 165 ||||||||||||||||||| Sbjct: 43983 gcagctccatggctgccat 43965
>ref|NM_172296.1| Mus musculus doublesex and mab-3 related transcription factor like family A2 (Dmrta2), mRNA Length = 2919 Score = 38.2 bits (19), Expect = 8.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 139 ctccgagtgcagctccatggctg 161 ||||||| ||||||||||||||| Sbjct: 310 ctccgagcgcagctccatggctg 288
>emb|AL929164.12| Mouse DNA sequence from clone RP23-226L18 on chromosome 2, complete sequence Length = 170293 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 1 accagcaaagagctcaaga 19 ||||||||||||||||||| Sbjct: 7669 accagcaaagagctcaaga 7687
>gb|AF072715.1|AF072715 Mycoplasma mycoides capri lipoprotein A precursor (lppA) and putative methylase genes, complete cds; mannitol-1-phosphate dehydrogenase (mtlD) gene, partial cds; and unknown genes Length = 4581 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 70 tccattgatatcatcaaat 88 ||||||||||||||||||| Sbjct: 1219 tccattgatatcatcaaat 1201
>gb|AF072714.1|AF072714 Mycoplasma mycoides mycoides LC putative lipoprotein gene, partial cds; major lipoprotein precursor (lppA) gene, complete cds; and pseudogene, complete sequence Length = 2250 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 70 tccattgatatcatcaaat 88 ||||||||||||||||||| Sbjct: 1445 tccattgatatcatcaaat 1427
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 143 gagtgcagctccatggctg 161 ||||||||||||||||||| Sbjct: 5734548 gagtgcagctccatggctg 5734530
>emb|CT010444.10| Mouse DNA sequence from clone RP23-151L20 on chromosome 12, complete sequence Length = 198654 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 cagcaaagagctcaagaaa 21 ||||||||||||||||||| Sbjct: 70593 cagcaaagagctcaagaaa 70611
>gb|AC135293.3| Mus musculus BAC clone RP23-206K5 from 6, complete sequence Length = 197573 Score = 38.2 bits (19), Expect = 8.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 3 cagcaaagagctcaagaaaatcc 25 |||||||||| |||||||||||| Sbjct: 121450 cagcaaagagttcaagaaaatcc 121428
>emb|AL627188.18| Mouse DNA sequence from clone RP23-113G7 on chromosome 4, complete sequence Length = 208153 Score = 38.2 bits (19), Expect = 8.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 139 ctccgagtgcagctccatggctg 161 ||||||| ||||||||||||||| Sbjct: 138910 ctccgagcgcagctccatggctg 138888 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,061,487 Number of Sequences: 3902068 Number of extensions: 1061487 Number of successful extensions: 73699 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73626 Number of HSP's gapped (non-prelim): 73 length of query: 171 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 149 effective length of database: 17,147,199,772 effective search space: 2554932766028 effective search space used: 2554932766028 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)