ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags16n19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CR937029.1| M.truncatula DNA sequence from clone MTH2-105B15... 42 0.53
2emb|CR378661.1| M.truncatula DNA sequence from clone XX-10B15, c... 42 0.53
3emb|CT573027.7| M.truncatula DNA sequence from clone MTH2-40D16 ... 42 0.53
4ref|XM_716467.1| Candida albicans SC5314 putative mitochondrial ... 40 2.1
5ref|XM_716196.1| Candida albicans SC5314 hypothetical protein (C... 40 2.1
6gb|AC095402.7| Rattus norvegicus 2 BAC CH230-7A22 (Children's Ho... 40 2.1
7emb|CT010474.12| Mouse DNA sequence from clone RP23-199B14 on ch... 40 2.1
8gb|AC131991.8| Mus musculus chromosome 12, clone RP24-190H17, co... 40 2.1
9gb|AC154113.1| Medicago truncatula chromosome 2 BAC clone mte1-2... 38 8.3
10gb|AC160404.13| Mus musculus 10 BAC RP24-217L12 (Roswell Park Ca... 38 8.3
11gb|AC153544.4| Mus musculus 10 BAC RP23-326C6 (Roswell Park Canc... 38 8.3
12gb|AY145837.1| Mus musculus doublesex- and mab-3-related transcr... 38 8.3
13gb|AC114007.6| Mus musculus BAC clone RP23-187G1 from chromosome... 38 8.3
14emb|AL731680.8| Human DNA sequence from clone RP11-152I12 on chr... 38 8.3
15emb|AL132981.12|HSDJ80L13 Human DNA sequence from clone RP1-80L1... 38 8.3
16emb|AL109611.10|HSDJ600E6 Human DNA sequence from clone RP4-600E... 38 8.3
17gb|AY309922.1| Homo sapiens BH3 interacting domain death agonist... 38 8.3
18emb|Z98551.1|PFMAL3P6 Plasmodium falciparum MAL3P6, complete seq... 38 8.3
19gb|AC154754.2| Mus musculus BAC clone RP24-405D2 from chromosome... 38 8.3
20gb|AC135106.8| Pan troglodytes clone rp43-48a6, complete sequence 38 8.3
21gb|AC141866.11| Medicago truncatula clone mth2-12p22, complete s... 38 8.3
22gb|AC108053.3| Homo sapiens BAC clone RP11-342I1 from 4, complet... 38 8.3
23gb|AC099777.2| Homo sapiens chromosome 3 clone RP11-332H21, comp... 38 8.3
24gb|AC012690.17| Homo sapiens chromosome 10 clone RP11-127B19, co... 38 8.3
25dbj|AK080774.1| Mus musculus 9.5 days embryo parthenogenote cDNA... 38 8.3
26gb|AC016026.15| Homo sapiens chromosome 22 clone b461k10 map 22q... 38 8.3
27gb|AC016025.14| Homo sapiens chromosome 22 clone b342k14 map 22q... 38 8.3
28gb|AC007845.14| Homo sapiens chromosome 22 clone 678g6 map 22q11... 38 8.3
29ref|NM_172296.1| Mus musculus doublesex and mab-3 related transc... 38 8.3
30emb|AL929164.12| Mouse DNA sequence from clone RP23-226L18 on ch... 38 8.3
31gb|AF072715.1|AF072715 Mycoplasma mycoides capri lipoprotein A p... 38 8.3
32gb|AF072714.1|AF072714 Mycoplasma mycoides mycoides LC putative ... 38 8.3
33gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 38 8.3
34emb|CT010444.10| Mouse DNA sequence from clone RP23-151L20 on ch... 38 8.3
35gb|AC135293.3| Mus musculus BAC clone RP23-206K5 from 6, complet... 38 8.3
36emb|AL627188.18| Mouse DNA sequence from clone RP23-113G7 on chr... 38 8.3

>emb|CR937029.1| M.truncatula DNA sequence from clone MTH2-105B15 on chromosome 3,
             complete sequence
          Length = 112155

 Score = 42.1 bits (21), Expect = 0.53
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 62    tttttgtctccattgatatca 82
             |||||||||||||||||||||
Sbjct: 75269 tttttgtctccattgatatca 75289



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>emb|CR378661.1| M.truncatula DNA sequence from clone XX-10B15, complete sequence
          Length = 112155

 Score = 42.1 bits (21), Expect = 0.53
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 62    tttttgtctccattgatatca 82
             |||||||||||||||||||||
Sbjct: 75269 tttttgtctccattgatatca 75289



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>emb|CT573027.7| M.truncatula DNA sequence from clone MTH2-40D16 on chromosome 3,
             complete sequence
          Length = 58256

 Score = 42.1 bits (21), Expect = 0.53
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 62    tttttgtctccattgatatca 82
             |||||||||||||||||||||
Sbjct: 38235 tttttgtctccattgatatca 38215



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>ref|XM_716467.1| Candida albicans SC5314 putative mitochondrial protein Fmp47
           (CaO19_3062), mRNA
          Length = 3540

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 70  tccattgatatcatcaaatt 89
           ||||||||||||||||||||
Sbjct: 173 tccattgatatcatcaaatt 154



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>ref|XM_716196.1| Candida albicans SC5314 hypothetical protein (CaO19_10580), mRNA
          Length = 3540

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 70  tccattgatatcatcaaatt 89
           ||||||||||||||||||||
Sbjct: 173 tccattgatatcatcaaatt 154



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>gb|AC095402.7| Rattus norvegicus 2 BAC CH230-7A22 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 224026

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 7      aaagagctcaagaaaatccc 26
              ||||||||||||||||||||
Sbjct: 213186 aaagagctcaagaaaatccc 213167



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>emb|CT010474.12| Mouse DNA sequence from clone RP23-199B14 on chromosome 12, complete
             sequence
          Length = 205340

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    cattgatatcatcaaattcc 91
             ||||||||||||||||||||
Sbjct: 51124 cattgatatcatcaaattcc 51143



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>gb|AC131991.8| Mus musculus chromosome 12, clone RP24-190H17, complete sequence
          Length = 148426

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 72     cattgatatcatcaaattcc 91
              ||||||||||||||||||||
Sbjct: 136033 cattgatatcatcaaattcc 136052



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>gb|AC154113.1| Medicago truncatula chromosome 2 BAC clone mte1-25a23, complete
             sequence
          Length = 42983

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 64    tttgtctccattgatatcatcaa 86
             ||||| |||||||||||||||||
Sbjct: 40017 tttgtttccattgatatcatcaa 40039



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>gb|AC160404.13| Mus musculus 10 BAC RP24-217L12 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 153457

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 72     cattgatatcatcaaattc 90
              |||||||||||||||||||
Sbjct: 108020 cattgatatcatcaaattc 108002



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>gb|AC153544.4| Mus musculus 10 BAC RP23-326C6 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 215036

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 72     cattgatatcatcaaattc 90
              |||||||||||||||||||
Sbjct: 197515 cattgatatcatcaaattc 197533



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>gb|AY145837.1| Mus musculus doublesex- and mab-3-related transcription factor 5
           (Dmrt5) mRNA, complete cds
          Length = 2919

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 139 ctccgagtgcagctccatggctg 161
           ||||||| |||||||||||||||
Sbjct: 310 ctccgagcgcagctccatggctg 288



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>gb|AC114007.6| Mus musculus BAC clone RP23-187G1 from chromosome 14, complete sequence
          Length = 203514

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 50     aaatgggactgntttttgtctc 71
              ||||||||||| ||||||||||
Sbjct: 194929 aaatgggactggtttttgtctc 194950



 Score = 38.2 bits (19), Expect = 8.3
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 50     aaatgggactgntttttgtctc 71
              ||||||||||| ||||||||||
Sbjct: 151207 aaatgggactgttttttgtctc 151228



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>emb|AL731680.8| Human DNA sequence from clone RP11-152I12 on chromosome 10 Contains the
             3' end of the FGFR2 gene for fibroblast growth factor
             receptor 2, complete sequence
          Length = 62988

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 4     agcaaagagctcaagaaaa 22
             |||||||||||||||||||
Sbjct: 42367 agcaaagagctcaagaaaa 42385



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>emb|AL132981.12|HSDJ80L13 Human DNA sequence from clone RP1-80L13 on chromosome 20 Contains STSs
             and GSSs, complete sequence
          Length = 112186

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 147   gcagctccatggctgccat 165
             |||||||||||||||||||
Sbjct: 72554 gcagctccatggctgccat 72572



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>emb|AL109611.10|HSDJ600E6 Human DNA sequence from clone RP4-600E6 on chromosome 20 Contains STSs
             and GSSs, complete sequence
          Length = 100204

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 4     agcaaagagctcaagaaaa 22
             |||||||||||||||||||
Sbjct: 44134 agcaaagagctcaagaaaa 44152



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>gb|AY309922.1| Homo sapiens BH3 interacting domain death agonist (BID) gene,
            complete cds
          Length = 42509

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 147  gcagctccatggctgccat 165
            |||||||||||||||||||
Sbjct: 4113 gcagctccatggctgccat 4131



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>emb|Z98551.1|PFMAL3P6 Plasmodium falciparum MAL3P6, complete sequence
          Length = 164399

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 72    cattgatatcatcaaattc 90
             |||||||||||||||||||
Sbjct: 67129 cattgatatcatcaaattc 67147



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>gb|AC154754.2| Mus musculus BAC clone RP24-405D2 from chromosome 14, complete sequence
          Length = 159848

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 50     aaatgggactgntttttgtctc 71
              ||||||||||| ||||||||||
Sbjct: 116850 aaatgggactgttttttgtctc 116829



 Score = 38.2 bits (19), Expect = 8.3
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 50    aaatgggactgntttttgtctc 71
             ||||||||||| ||||||||||
Sbjct: 73128 aaatgggactggtttttgtctc 73107



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>gb|AC135106.8| Pan troglodytes clone rp43-48a6, complete sequence
          Length = 181842

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 147   gcagctccatggctgccat 165
             |||||||||||||||||||
Sbjct: 60842 gcagctccatggctgccat 60824



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>gb|AC141866.11| Medicago truncatula clone mth2-12p22, complete sequence
          Length = 126907

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 64     tttgtctccattgatatcatcaa 86
              ||||| |||||||||||||||||
Sbjct: 113264 tttgtttccattgatatcatcaa 113242



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>gb|AC108053.3| Homo sapiens BAC clone RP11-342I1 from 4, complete sequence
          Length = 94040

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 17    agaaaatccccatgtgcaa 35
             |||||||||||||||||||
Sbjct: 83018 agaaaatccccatgtgcaa 83036



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>gb|AC099777.2| Homo sapiens chromosome 3 clone RP11-332H21, complete sequence
          Length = 206537

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 6     caaagagctcaagaaaatc 24
             |||||||||||||||||||
Sbjct: 93767 caaagagctcaagaaaatc 93785



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>gb|AC012690.17| Homo sapiens chromosome 10 clone RP11-127B19, complete sequence
          Length = 161276

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 4     agcaaagagctcaagaaaa 22
             |||||||||||||||||||
Sbjct: 70776 agcaaagagctcaagaaaa 70794



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>dbj|AK080774.1| Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length
           enriched library, clone:B130012I23
           product:DOUBLESEX-MAB-3 (DM) DOMAIN (FRAGMENT) homolog
           [Homo sapiens], full insert sequence
          Length = 2946

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 139 ctccgagtgcagctccatggctg 161
           ||||||| |||||||||||||||
Sbjct: 312 ctccgagcgcagctccatggctg 290



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>gb|AC016026.15| Homo sapiens chromosome 22 clone b461k10 map 22q11, complete sequence
          Length = 187587

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 147   gcagctccatggctgccat 165
             |||||||||||||||||||
Sbjct: 16840 gcagctccatggctgccat 16822



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>gb|AC016025.14| Homo sapiens chromosome 22 clone b342k14 map 22q11, complete sequence
          Length = 180269

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 147    gcagctccatggctgccat 165
              |||||||||||||||||||
Sbjct: 115983 gcagctccatggctgccat 115965



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>gb|AC007845.14| Homo sapiens chromosome 22 clone 678g6 map 22q11, complete sequence
          Length = 134036

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 147   gcagctccatggctgccat 165
             |||||||||||||||||||
Sbjct: 43983 gcagctccatggctgccat 43965



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>ref|NM_172296.1| Mus musculus doublesex and mab-3 related transcription factor like
           family A2 (Dmrta2), mRNA
          Length = 2919

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 139 ctccgagtgcagctccatggctg 161
           ||||||| |||||||||||||||
Sbjct: 310 ctccgagcgcagctccatggctg 288



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>emb|AL929164.12| Mouse DNA sequence from clone RP23-226L18 on chromosome 2, complete
            sequence
          Length = 170293

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 1    accagcaaagagctcaaga 19
            |||||||||||||||||||
Sbjct: 7669 accagcaaagagctcaaga 7687



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>gb|AF072715.1|AF072715 Mycoplasma mycoides capri lipoprotein A precursor (lppA) and putative
            methylase genes, complete cds; mannitol-1-phosphate
            dehydrogenase (mtlD) gene, partial cds; and unknown genes
          Length = 4581

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 70   tccattgatatcatcaaat 88
            |||||||||||||||||||
Sbjct: 1219 tccattgatatcatcaaat 1201



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>gb|AF072714.1|AF072714 Mycoplasma mycoides mycoides LC putative lipoprotein gene, partial
            cds; major lipoprotein precursor (lppA) gene, complete
            cds; and  pseudogene, complete sequence
          Length = 2250

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 70   tccattgatatcatcaaat 88
            |||||||||||||||||||
Sbjct: 1445 tccattgatatcatcaaat 1427



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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 143     gagtgcagctccatggctg 161
               |||||||||||||||||||
Sbjct: 5734548 gagtgcagctccatggctg 5734530



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>emb|CT010444.10| Mouse DNA sequence from clone RP23-151L20 on chromosome 12, complete
             sequence
          Length = 198654

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 3     cagcaaagagctcaagaaa 21
             |||||||||||||||||||
Sbjct: 70593 cagcaaagagctcaagaaa 70611



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>gb|AC135293.3| Mus musculus BAC clone RP23-206K5 from 6, complete sequence
          Length = 197573

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 3      cagcaaagagctcaagaaaatcc 25
              |||||||||| ||||||||||||
Sbjct: 121450 cagcaaagagttcaagaaaatcc 121428



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>emb|AL627188.18| Mouse DNA sequence from clone RP23-113G7 on chromosome 4, complete
              sequence
          Length = 208153

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 139    ctccgagtgcagctccatggctg 161
              ||||||| |||||||||||||||
Sbjct: 138910 ctccgagcgcagctccatggctg 138888


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,061,487
Number of Sequences: 3902068
Number of extensions: 1061487
Number of successful extensions: 73699
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73626
Number of HSP's gapped (non-prelim): 73
length of query: 171
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 149
effective length of database: 17,147,199,772
effective search space: 2554932766028
effective search space used: 2554932766028
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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