ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags17c17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC115968.10| Mus musculus chromosome 1, clone RP24-72P6, comp... 36 6.0
2emb|AL731538.4| Human DNA sequence from clone RP11-457G5 on chro... 36 6.0
3dbj|AK047341.1| Mus musculus 10 days neonate cerebellum cDNA, RI... 36 6.0
4emb|AL691472.6| Mouse DNA sequence from clone RP23-217C12 on chr... 36 6.0

>gb|AC115968.10| Mus musculus chromosome 1, clone RP24-72P6, complete sequence
          Length = 229959

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 24     ggagacgaccttgcccagcttg 45
              |||||||||| |||||||||||
Sbjct: 180323 ggagacgaccctgcccagcttg 180344



to top

>emb|AL731538.4| Human DNA sequence from clone RP11-457G5 on chromosome 10 Contains part
             of the gene for alpha-catenin-like protein (MGC26194)
             (VR22), complete sequence
          Length = 163119

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                  
Query: 4     tgggtgcaggatttnttgagg 24
             |||||||||||||| ||||||
Sbjct: 66304 tgggtgcaggatttgttgagg 66284



to top

>dbj|AK047341.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:B930051F23
            product:unclassifiable, full insert sequence
          Length = 3440

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 30   gaccttgcccagcttgct 47
            ||||||||||||||||||
Sbjct: 3290 gaccttgcccagcttgct 3273



to top

>emb|AL691472.6| Mouse DNA sequence from clone RP23-217C12 on chromosome 2, complete
             sequence
          Length = 212364

 Score = 36.2 bits (18), Expect = 6.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 30    gaccttgcccagcttgct 47
             ||||||||||||||||||
Sbjct: 67011 gaccttgcccagcttgct 67028


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 186,571
Number of Sequences: 3902068
Number of extensions: 186571
Number of successful extensions: 48334
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48327
Number of HSP's gapped (non-prelim): 7
length of query: 47
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 27
effective length of database: 17,155,003,908
effective search space: 463185105516
effective search space used: 463185105516
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
to top