Clone Information

BLAST Search Result

Clone Name	rbags17c15
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AF040700.1\|AF040700 Oryza sativa methionyl-tRNA synthetase mR...	438	e-119
2	gb\|BT024103.1\| Zea mays clone EL01N0522A02 mRNA sequence	404	e-109
3	gb\|AY109485.1\| Zea mays CL580_1 mRNA sequence	396	e-107
4	gb\|BT016446.1\| Zea mays clone Contig279 mRNA sequence	389	e-105
5	dbj\|AK059433.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	188	2e-44
6	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	178	1e-41
7	dbj\|AP003618.3\| Oryza sativa (japonica cultivar-group) genomic D...	178	1e-41
8	gb\|AC144806.10\| Medicago truncatula clone mth2-34h22, complete s...	58	4e-05
9	ref\|NM_001017050.2\| Xenopus tropicalis hypothetical protein LOC5...	52	0.002
10	gb\|BC075609.1\| Xenopus tropicalis hypothetical protein LOC549804...	52	0.002
11	gb\|BT013704.1\| Lycopersicon esculentum clone 132546F, mRNA sequence	50	0.009
12	emb\|Z73427.1\|CEF58B3 Caenorhabditis elegans Cosmid F58B3, comple...	50	0.009
13	ref\|NM_069795.3\| Caenorhabditis elegans Methionyl tRNA Synthetas...	50	0.009
14	ref\|NM_117452.3\| Arabidopsis thaliana ATP binding / methionine-t...	46	0.14
15	gb\|AC140477.2\| Mus musculus BAC clone RP24-132G6 from chromosome...	46	0.14
16	gb\|AC127281.3\| Mus musculus BAC clone RP24-273C15 from chromosom...	46	0.14
17	gb\|AY091454.1\| Arabidopsis thaliana putative methionyl-tRNA synt...	46	0.14
18	gb\|AY064009.1\| Arabidopsis thaliana putative methionyl-tRNA synt...	46	0.14
19	ref\|XM_778051.1\| PREDICTED: Strongylocentrotus purpuratus simila...	42	2.2
20	dbj\|AK086228.1\| Mus musculus 15 days embryo head cDNA, RIKEN ful...	42	2.2
21	gb\|AC171014.3\| Gallus gallus BAC clone CH261-89A18 from chromoso...	42	2.2
22	gb\|AC008786.6\|AC008786 Homo sapiens chromosome 5 clone CTD-2037L...	42	2.2
23	gb\|AC131655.4\| Mus musculus BAC clone RP23-233G16 from 8, comple...	42	2.2
24	gb\|AE017131.1\| Yersinia pestis biovar Medievalis str. 91001 sect...	40	8.9
25	gb\|AE009952.1\| Yersinia pestis KIM, complete genome	40	8.9
26	gb\|AC161758.3\| Mus musculus BAC clone RP23-455F6 from chromosome...	40	8.9
27	gb\|AC123043.2\| Mus musculus BAC clone RP24-547G7 from 13, comple...	40	8.9
28	emb\|AL590624.8\| Human DNA sequence from clone RP11-380B22 on chr...	40	8.9
29	gb\|AC044873.13\| Homo sapiens chromosome 18, clone RP11-715C4, co...	40	8.9
30	emb\|BX936398.1\| Yersinia pseudotuberculosis IP32953 genome, comp...	40	8.9
31	emb\|BX842650.1\| Bdellovibrio bacteriovorus complete genome, stra...	40	8.9
32	gb\|AC119275.12\| Mus musculus chromosome 8, clone RP24-459A4, com...	40	8.9
33	gb\|AC091027.9\| Homo sapiens chromosome 18, clone CTD-2382H12, co...	40	8.9
34	gb\|AC008870.8\| Homo sapiens chromosome 16 clone CTD-2196E14, com...	40	8.9
35	gb\|AC008949.9\| Homo sapiens chromosome 5 clone CTD-2335O24, comp...	40	8.9
36	gb\|AC012317.7\| Homo sapiens chromosome 16 clone CTD-2385L22, com...	40	8.9
37	dbj\|BS000179.1\| Pan troglodytes chromosome 22 clone:RP43-082J09,...	40	8.9
38	gb\|AC138388.3\| Mus musculus BAC clone RP23-455J6 from 10, comple...	40	8.9
39	emb\|CT030235.12\| Mouse DNA sequence from clone RP23-240F19 on ch...	40	8.9
40	emb\|CT030164.9\| Mouse DNA sequence from clone RP23-311P8 on chro...	40	8.9
41	emb\|AJ414148.1\| Yersinia pestis strain CO92 complete genome; seg...	40	8.9

>gb|AF040700.1|AF040700 Oryza sativa methionyl-tRNA synthetase mRNA, complete cds
          Length = 2850

 Score =  438 bits (221), Expect = e-119
 Identities = 407/469 (86%)
 Strand = Plus / Minus

                                                                        
Query: 145  tctccattcgctatggtcttgaccttgcataccccagccgaagttgtgaacggaacatct 204
            |||||| ||||||| | ||| |||||||| || ||||| ||||||||||| || ||||| 
Sbjct: 2448 tctccactcgctatcgacttcaccttgcaaactccagctgaagttgtgaagggtacatcc 2389

                                                                        
Query: 205  ttgtagcacgcgacaagctcaccgttgctgtgcagatcggcggacaacttctcccaggtt 264
            ||||||||||| || ||||| |||||||||||||| || || || | ||||||||| || 
Sbjct: 2388 ttgtagcacgccacgagctcgccgttgctgtgcaggtcagctgatagcttctcccacgtc 2329

                                                                        
Query: 265  ttgcttttggcattaagcgaagcctcgggctcaccagagaacccggcaaaggtcaccctc 324
            ||||| || || || || || ||||| ||||| |||||| |||| |||||||||||||||
Sbjct: 2328 ttgctctttgcgttgagagacgcctcaggctctccagagtacccagcaaaggtcaccctc 2269

                                                                        
Query: 325  tccccgacagcagcggattctggaggctcgaccaactcaacctttgagtggtcctcgttc 384
            ||||| || || ||||||||||| ||||| |||| |||||||||||  |||||||| || 
Sbjct: 2268 tccccaaccgctgcggattctggtggctcaaccagctcaacctttgtatggtcctcattt 2209

                                                                        
Query: 385  gatgcagccaaaaccatagcatgtgactttataccgcgcattgccaccggtttaagattg 444
            |||||||||| |||||| |||||||| |||||||||||||| ||||| ||||| ||||||
Sbjct: 2208 gatgcagccagaaccattgcatgtgattttataccgcgcatcgccactggtttcagattg 2149

                                                                        
Query: 445  cagagcacacacactttccgattctgcatttcctcaagagggatgaatttgacaaggccg 504
            ||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 2148 cagagaacacacactttccggttctgcatttcttcaagagggatgaatttgacaaggccg 2089

                                                                        
Query: 505  ctaaccactgttcttggtgcctcttctccaacatctatctcttctacgtagagtgaatct 564
            ||||| |||||||||||||| || ||||||||||| ||||| ||||| || || ||||| 
Sbjct: 2088 ctaacaactgttcttggtgcttcctctccaacatcaatctcctctacatacagcgaatca 2029

                                                             
Query: 565  gcatctggatgcttctctgcttttctgataagccctacccgaatatcca 613
            |||||||||||||||| |||||| ||||||||||| || ||||||||||
Sbjct: 2028 gcatctggatgcttctgtgctttcctgataagccccactcgaatatcca 1980

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>gb|BT024103.1| Zea mays clone EL01N0522A02 mRNA sequence
          Length = 1706

 Score =  404 bits (204), Expect = e-109
 Identities = 414/484 (85%)
 Strand = Plus / Minus

                                                                        
Query: 142  atctctccattcgctatggtcttgaccttgcataccccagccgaagttgtgaacggaaca 201
            |||||||| |||||||| ||||| ||| |||| || |||||||| || ||||| || |||
Sbjct: 1389 atctctccgttcgctattgtcttcaccctgcagactccagccgaggtagtgaagggcaca 1330

                                                                        
Query: 202  tctttgtagcacgcgacaagctcaccgttgctgtgcagatcggcggacaacttctcccag 261
            ||| |||||||||| || |||||||||||||||||||  ||||||| || ||||||||| 
Sbjct: 1329 tctctgtagcacgccaccagctcaccgttgctgtgcaactcggcggccagcttctcccac 1270

                                                                        
Query: 262  gttttgcttttggcattaagcgaagcctcgggctcaccagagaacccggcaaaggtcacc 321
            || ||||| ||| || | || ||||||||||||||||| | | |||| |||||||| || 
Sbjct: 1269 gtcttgctcttgccactgagggaagcctcgggctcacccgcgtacccagcaaaggtaaca 1210

                                                                        
Query: 322  ctctccccgacagcagcggattctggaggctcgaccaactcaacctttgagtggtcctcg 381
            | |||||| |||||||| || |||||||| || |||||||||||||| | ||||||||| 
Sbjct: 1209 cgctcccccacagcagcagactctggaggttccaccaactcaaccttcgtgtggtcctca 1150

                                                                        
Query: 382  ttcgatgcagccaaaaccatagcatgtgactttataccgcgcattgccaccggtttaaga 441
            ||||||||||||| |||||| |||||||| ||||| || ||||||||||||||||| |||
Sbjct: 1149 ttcgatgcagccagaaccattgcatgtgattttatgccacgcattgccaccggtttcaga 1090

                                                                        
Query: 442  ttgcagagcacacacactttccgattctgcatttcctcaagagggatgaatttgacaagg 501
            ||||||||||| || ||||||||  |||||||||| |||||||| |||||||| ||||||
Sbjct: 1089 ttgcagagcacgcaaactttccggctctgcatttcttcaagaggtatgaatttaacaagg 1030

                                                                        
Query: 502  ccgctaaccactgttcttggtgcctcttctccaacatctatctcttctacgtagagtgaa 561
            || || || |||||||| || || || ||||||||||| ||||| || ||||| || |||
Sbjct: 1029 ccactgactactgttctcggcgcgtcctctccaacatcaatctcctccacgtaaagggaa 970

                                                                        
Query: 562  tctgcatctggatgcttctctgcttttctgataagccctacccgaatatccagcttggca 621
            || ||||||||||||||||||||||||||||||||||| || | |||||||| ||| |||
Sbjct: 969  tcagcatctggatgcttctctgcttttctgataagccccactctaatatccaactttgca 910

                
Query: 622  actg 625
            ||||
Sbjct: 909  actg 906

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>gb|AY109485.1| Zea mays CL580_1 mRNA sequence
          Length = 2647

 Score =  396 bits (200), Expect = e-107
 Identities = 413/484 (85%)
 Strand = Plus / Minus

                                                                        
Query: 142  atctctccattcgctatggtcttgaccttgcataccccagccgaagttgtgaacggaaca 201
            |||||||| |||||||| ||||| ||| |||| || |||||||| || ||||| || |||
Sbjct: 2348 atctctccgttcgctattgtcttcaccctgcagactccagccgaggtagtgaagggcaca 2289

                                                                        
Query: 202  tctttgtagcacgcgacaagctcaccgttgctgtgcagatcggcggacaacttctcccag 261
            ||| |||||||||| || |||||||||||||||||||  ||||||| || ||||||||| 
Sbjct: 2288 tctctgtagcacgccaccagctcaccgttgctgtgcaactcggcggccagcttctcccac 2229

                                                                        
Query: 262  gttttgcttttggcattaagcgaagcctcgggctcaccagagaacccggcaaaggtcacc 321
            || ||||| ||| || | || ||||||||||||||||| | | |||| |||||||| || 
Sbjct: 2228 gtcttgctcttgccactgagggaagcctcgggctcacccgcgtacccagcaaaggtaaca 2169

                                                                        
Query: 322  ctctccccgacagcagcggattctggaggctcgaccaactcaacctttgagtggtcctcg 381
            | ||| || |||||||| || |||||||| || |||||||||||||| | ||||||||| 
Sbjct: 2168 cgctcgcccacagcagcagactctggaggttccaccaactcaaccttcgtgtggtcctca 2109

                                                                        
Query: 382  ttcgatgcagccaaaaccatagcatgtgactttataccgcgcattgccaccggtttaaga 441
            ||||||||||||| |||||| |||||||| ||||| || ||||||||||||||||| |||
Sbjct: 2108 ttcgatgcagccagaaccattgcatgtgattttatgccacgcattgccaccggtttcaga 2049

                                                                        
Query: 442  ttgcagagcacacacactttccgattctgcatttcctcaagagggatgaatttgacaagg 501
            ||||||||||| || ||||||||  |||||||||| |||||||| |||||||| ||||||
Sbjct: 2048 ttgcagagcacgcaaactttccggctctgcatttcttcaagaggtatgaatttaacaagg 1989

                                                                        
Query: 502  ccgctaaccactgttcttggtgcctcttctccaacatctatctcttctacgtagagtgaa 561
            || || || |||||||| || || || ||||||||||| ||||| || ||||| || |||
Sbjct: 1988 ccactgactactgttctcggcgcgtcctctccaacatcaatctcctccacgtaaagggaa 1929

                                                                        
Query: 562  tctgcatctggatgcttctctgcttttctgataagccctacccgaatatccagcttggca 621
            || ||||||||||||||||||||||||||||||||||| || | |||||||| ||| |||
Sbjct: 1928 tcagcatctggatgcttctctgcttttctgataagccccactctaatatccaactttgca 1869

                
Query: 622  actg 625
            ||||
Sbjct: 1868 actg 1865

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>gb|BT016446.1| Zea mays clone Contig279 mRNA sequence
          Length = 1192

 Score =  389 bits (196), Expect = e-105
 Identities = 412/484 (85%)
 Strand = Plus / Minus

                                                                       
Query: 130 tgtgcctatcggatctctccattcgctatggtcttgaccttgcataccccagccgaagtt 189
           |||||||| || |||||||| || | ||| |||||||||||||| |  |||||||| |||
Sbjct: 978 tgtgcctagcgaatctctccgtttggtattgtcttgaccttgcagattccagccgaggtt 919

                                                                       
Query: 190 gtgaacggaacatctttgtagcacgcgacaagctcaccgttgctgtgcagatcggcggac 249
           ||||| || ||||||||||||||||| || ||||||||||| |||||||| ||||||| |
Sbjct: 918 gtgaagggcacatctttgtagcacgccacgagctcaccgttactgtgcagctcggcgggc 859

                                                                       
Query: 250 aacttctcccaggttttgcttttggcattaagcgaagcctcgggctcaccagagaacccg 309
           | ||||||||| || ||||| ||| || | || |||||||| ||||| || ||| |||| 
Sbjct: 858 agcttctcccacgtcttgctcttgccactgagggaagcctcaggctcccccgagtaccca 799

                                                                       
Query: 310 gcaaaggtcaccctctccccgacagcagcggattctggaggctcgaccaactcaaccttt 369
           |||||||| || | ||| || || ||||| ||||| || ||||| |||||||||||||| 
Sbjct: 798 gcaaaggtaacacgctcgcccacggcagcagattcgggtggctccaccaactcaaccttc 739

                                                                       
Query: 370 gagtggtcctcgttcgatgcagccaaaaccatagcatgtgactttataccgcgcattgcc 429
           | ||||||||| |||||||||||||||||||| |||||||| |||||||| |||||||||
Sbjct: 738 gtgtggtcctcattcgatgcagccaaaaccattgcatgtgattttataccacgcattgcc 679

                                                                       
Query: 430 accggtttaagattgcagagcacacacactttccgattctgcatttcctcaagagggatg 489
           || ||||| ||||||||||| || || |||||||| ||||||||||| || ||||| |||
Sbjct: 678 acaggtttcagattgcagagtacgcaaactttccggttctgcatttcttcgagaggtatg 619

                                                                       
Query: 490 aatttgacaaggccgctaaccactgttcttggtgcctcttctccaacatctatctcttct 549
           |||||||| ||||| || ||||||||||||||||  || ||||||||||| ||||| || 
Sbjct: 618 aatttgacgaggccactgaccactgttcttggtgtgtcctctccaacatcaatctcctcc 559

                                                                       
Query: 550 acgtagagtgaatctgcatctggatgcttctctgcttttctgataagccctacccgaata 609
           ||||| || ||||| ||||||||||||||||||||||| |||||||| || || | ||||
Sbjct: 558 acgtaaagggaatcagcatctggatgcttctctgctttcctgataaggcccactctaata 499

               
Query: 610 tcca 613
           ||||
Sbjct: 498 tcca 495

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>dbj|AK059433.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-F07, full
           insert sequence
          Length = 376

 Score =  188 bits (95), Expect = 2e-44
 Identities = 221/263 (84%)
 Strand = Plus / Minus

                                                                       
Query: 145 tctccattcgctatggtcttgaccttgcataccccagccgaagttgtgaacggaacatct 204
           |||||| ||||||| | ||| |||||||| || ||||| ||||||||||| || ||||| 
Sbjct: 263 tctccactcgctatcgacttcaccttgcaaactccagctgaagttgtgaagggtacatcc 204

                                                                       
Query: 205 ttgtagcacgcgacaagctcaccgttgctgtgcagatcggcggacaacttctcccaggtt 264
           ||||||||||| || ||||| |||||||||||||| || || || | ||||||||| || 
Sbjct: 203 ttgtagcacgccacgagctcgccgttgctgtgcaggtcagctgatagcttctcccacgtc 144

                                                                       
Query: 265 ttgcttttggcattaagcgaagcctcgggctcaccagagaacccggcaaaggtcaccctc 324
           ||||| || || || || || ||||| ||||| |||||| |||| |||||||||||||||
Sbjct: 143 ttgctctttgcgttgagagacgcctcaggctctccagagtacccagcaaaggtcaccctc 84

                                                                       
Query: 325 tccccgacagcagcggattctggaggctcgaccaactcaacctttgagtggtcctcgttc 384
           ||||| || || ||||||||||| ||||| |||| |||||||||||  |||||||| || 
Sbjct: 83  tccccaaccgctgcggattctggtggctcaaccagctcaacctttgtatggtcctcattt 24

                                  
Query: 385 gatgcagccaaaaccatagcatg 407
           |||||||||| |||||| |||||
Sbjct: 23  gatgcagccagaaccattgcatg 1

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  178 bits (90), Expect = 1e-41
 Identities = 132/146 (90%)
 Strand = Plus / Plus

                                                                            
Query: 468      ctgcatttcctcaagagggatgaatttgacaaggccgctaaccactgttcttggtgcctc 527
                ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 17928273 ctgcatttcttcaagagggatgaatttgacaaggccgctaacaactgttcttggtgcttc 17928332

                                                                            
Query: 528      ttctccaacatctatctcttctacgtagagtgaatctgcatctggatgcttctctgcttt 587
                 ||||||||||| ||||| ||||| || || ||||| |||||||||||||||| ||||||
Sbjct: 17928333 ctctccaacatcaatctcctctacatacagcgaatcagcatctggatgcttctgtgcttt 17928392

                                          
Query: 588      tctgataagccctacccgaatatcca 613
                 ||||||||||| || ||||||||||
Sbjct: 17928393 cctgataagccccactcgaatatcca 17928418



 Score =  157 bits (79), Expect = 5e-35
 Identities = 187/223 (83%)
 Strand = Plus / Plus

                                                                            
Query: 145      tctccattcgctatggtcttgaccttgcataccccagccgaagttgtgaacggaacatct 204
                |||||| ||||||| | ||| |||||||| || ||||| ||||||||||| || ||||| 
Sbjct: 17927763 tctccactcgctatcgacttcaccttgcaaactccagctgaagttgtgaagggtacatcc 17927822

                                                                            
Query: 205      ttgtagcacgcgacaagctcaccgttgctgtgcagatcggcggacaacttctcccaggtt 264
                ||||||||||| || ||||| |||||||||||||| || || || | ||||||||| || 
Sbjct: 17927823 ttgtagcacgccacgagctcgccgttgctgtgcaggtcagctgatagcttctcccacgtc 17927882

                                                                            
Query: 265      ttgcttttggcattaagcgaagcctcgggctcaccagagaacccggcaaaggtcaccctc 324
                ||||| || || || || || ||||| ||||| |||||| |||| |||||||||||||||
Sbjct: 17927883 ttgctctttgcgttgagagacgcctcaggctctccagagtacccagcaaaggtcaccctc 17927942

                                                           
Query: 325      tccccgacagcagcggattctggaggctcgaccaactcaacct 367
                ||||| || || ||||||||||| ||||| |||| ||||||||
Sbjct: 17927943 tccccaaccgctgcggattctggtggctcaaccagctcaacct 17927985



 Score =  117 bits (59), Expect = 5e-23
 Identities = 95/107 (88%)
 Strand = Plus / Plus

                                                                            
Query: 364      acctttgagtggtcctcgttcgatgcagccaaaaccatagcatgtgactttataccgcgc 423
                |||||||  |||||||| || |||||||||| |||||| |||||||| ||||||||||||
Sbjct: 17928075 acctttgtatggtcctcatttgatgcagccagaaccattgcatgtgattttataccgcgc 17928134

                                                               
Query: 424      attgccaccggtttaagattgcagagcacacacactttccgattctg 470
                || ||||| ||||| ||||||||||| |||||||||||||| |||||
Sbjct: 17928135 atcgccactggtttcagattgcagagaacacacactttccggttctg 17928181

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>dbj|AP003618.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0561B08
          Length = 161083

 Score =  178 bits (90), Expect = 1e-41
 Identities = 132/146 (90%)
 Strand = Plus / Plus

                                                                          
Query: 468    ctgcatttcctcaagagggatgaatttgacaaggccgctaaccactgttcttggtgcctc 527
              ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 133462 ctgcatttcttcaagagggatgaatttgacaaggccgctaacaactgttcttggtgcttc 133521

                                                                          
Query: 528    ttctccaacatctatctcttctacgtagagtgaatctgcatctggatgcttctctgcttt 587
               ||||||||||| ||||| ||||| || || ||||| |||||||||||||||| ||||||
Sbjct: 133522 ctctccaacatcaatctcctctacatacagcgaatcagcatctggatgcttctgtgcttt 133581

                                        
Query: 588    tctgataagccctacccgaatatcca 613
               ||||||||||| || ||||||||||
Sbjct: 133582 cctgataagccccactcgaatatcca 133607



 Score =  157 bits (79), Expect = 5e-35
 Identities = 187/223 (83%)
 Strand = Plus / Plus

                                                                          
Query: 145    tctccattcgctatggtcttgaccttgcataccccagccgaagttgtgaacggaacatct 204
              |||||| ||||||| | ||| |||||||| || ||||| ||||||||||| || ||||| 
Sbjct: 132952 tctccactcgctatcgacttcaccttgcaaactccagctgaagttgtgaagggtacatcc 133011

                                                                          
Query: 205    ttgtagcacgcgacaagctcaccgttgctgtgcagatcggcggacaacttctcccaggtt 264
              ||||||||||| || ||||| |||||||||||||| || || || | ||||||||| || 
Sbjct: 133012 ttgtagcacgccacgagctcgccgttgctgtgcaggtcagctgatagcttctcccacgtc 133071

                                                                          
Query: 265    ttgcttttggcattaagcgaagcctcgggctcaccagagaacccggcaaaggtcaccctc 324
              ||||| || || || || || ||||| ||||| |||||| |||| |||||||||||||||
Sbjct: 133072 ttgctctttgcgttgagagacgcctcaggctctccagagtacccagcaaaggtcaccctc 133131

                                                         
Query: 325    tccccgacagcagcggattctggaggctcgaccaactcaacct 367
              ||||| || || ||||||||||| ||||| |||| ||||||||
Sbjct: 133132 tccccaaccgctgcggattctggtggctcaaccagctcaacct 133174



 Score =  117 bits (59), Expect = 5e-23
 Identities = 95/107 (88%)
 Strand = Plus / Plus

                                                                          
Query: 364    acctttgagtggtcctcgttcgatgcagccaaaaccatagcatgtgactttataccgcgc 423
              |||||||  |||||||| || |||||||||| |||||| |||||||| ||||||||||||
Sbjct: 133264 acctttgtatggtcctcatttgatgcagccagaaccattgcatgtgattttataccgcgc 133323

                                                             
Query: 424    attgccaccggtttaagattgcagagcacacacactttccgattctg 470
              || ||||| ||||| ||||||||||| |||||||||||||| |||||
Sbjct: 133324 atcgccactggtttcagattgcagagaacacacactttccggttctg 133370

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>gb|AC144806.10| Medicago truncatula clone mth2-34h22, complete sequence
          Length = 124550

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                  
Query: 526   tcttctccaacatctatctcttctacgtagagtgaatctgcatctggatgctt 578
             ||||| |||||||| |||||||| || || |||||||||||||| ||||||||
Sbjct: 75887 tcttcaccaacatcaatctcttcaacatacagtgaatctgcatcaggatgctt 75939

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>ref|NM_001017050.2| Xenopus tropicalis hypothetical protein LOC549804 (LOC549804), mRNA
          Length = 1118

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                 
Query: 527 cttctccaacatctatctcttctacgtagagtgaatctgcatctggatgcttct 580
           ||||||| ||||||| |||||||||||| || || || ||||| ||||||||||
Sbjct: 618 cttctcctacatctacctcttctacgtacagggagtcagcatcaggatgcttct 565

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>gb|BC075609.1| Xenopus tropicalis hypothetical protein LOC549804, mRNA (cDNA clone
           IMAGE:7000370)
          Length = 1118

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                 
Query: 527 cttctccaacatctatctcttctacgtagagtgaatctgcatctggatgcttct 580
           ||||||| ||||||| |||||||||||| || || || ||||| ||||||||||
Sbjct: 618 cttctcctacatctacctcttctacgtacagggagtcagcatcaggatgcttct 565

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>gb|BT013704.1| Lycopersicon esculentum clone 132546F, mRNA sequence
          Length = 2678

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 121/153 (79%)
 Strand = Plus / Minus

                                                                        
Query: 433  ggtttaagattgcagagcacacacactttccgattctgcatttcctcaagagggatgaat 492
            ||||| || ||||| || ||||| || || ||||||||||||||||| ||||| ||  ||
Sbjct: 2210 ggttttaggttgcatagaacacagacctttcgattctgcatttcctccagaggaatatat 2151

                                                                        
Query: 493  ttgacaaggccgctaaccactgttcttggtgcctcttctccaacatctatctcttctacg 552
            || || ||||| ||||| || ||||| ||     |||| |||||||| |||||||| || 
Sbjct: 2150 tttacgaggccactaacgacagttctgggctgagcttcaccaacatcaatctcttcaaca 2091

                                             
Query: 553  tagagtgaatctgcatctggatgcttctctgct 585
            || |  ||||| ||||| |||||||||| ||||
Sbjct: 2090 tacaaagaatcagcatcgggatgcttctgtgct 2058

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>emb|Z73427.1|CEF58B3 Caenorhabditis elegans Cosmid F58B3, complete sequence
          Length = 21948

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                  
Query: 529   tctccaacatctatctcttctacgtagagtgaatctgcatctggatgcttctc 581
             ||||||||||| |||| ||| ||||| || | ||||||||| |||||||||||
Sbjct: 13682 tctccaacatcgatctgttccacgtaaagagcatctgcatcaggatgcttctc 13734

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>ref|NM_069795.3| Caenorhabditis elegans Methionyl tRNA Synthetase family member
            (mrs-1) (mrs-1) mRNA, complete cds
          Length = 2986

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                 
Query: 529  tctccaacatctatctcttctacgtagagtgaatctgcatctggatgcttctc 581
            ||||||||||| |||| ||| ||||| || | ||||||||| |||||||||||
Sbjct: 2378 tctccaacatcgatctgttccacgtaaagagcatctgcatcaggatgcttctc 2326

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>ref|NM_117452.3| Arabidopsis thaliana ATP binding / methionine-tRNA ligase/ tRNA
            binding / tRNA ligase AT4G13780 mRNA, complete cds
          Length = 2640

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 463  cgattctgcatttcctcaagagg 485
            |||||||||||||||||||||||
Sbjct: 2148 cgattctgcatttcctcaagagg 2126

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>gb|AC140477.2| Mus musculus BAC clone RP24-132G6 from chromosome 12, complete sequence
          Length = 185642

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 507    aaccactgttcttggtgcctcttctcc 533
              |||||||||||||||| ||||||||||
Sbjct: 104872 aaccactgttcttggtacctcttctcc 104898

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>gb|AC127281.3| Mus musculus BAC clone RP24-273C15 from chromosome 13, complete
             sequence
          Length = 154576

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 567   atctggatgcttctctgcttttc 589
             |||||||||||||||||||||||
Sbjct: 78411 atctggatgcttctctgcttttc 78389

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>gb|AY091454.1| Arabidopsis thaliana putative methionyl-tRNA synthetase (At4g13780)
            mRNA, complete cds
          Length = 2425

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 463  cgattctgcatttcctcaagagg 485
            |||||||||||||||||||||||
Sbjct: 2066 cgattctgcatttcctcaagagg 2044

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>gb|AY064009.1| Arabidopsis thaliana putative methionyl-tRNA synthetase (At4g13780)
            mRNA, complete cds
          Length = 2656

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 463  cgattctgcatttcctcaagagg 485
            |||||||||||||||||||||||
Sbjct: 2148 cgattctgcatttcctcaagagg 2126

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>ref|XM_778051.1| PREDICTED: Strongylocentrotus purpuratus similar to tyrosyl-tRNA
           synthetase (LOC577843), mRNA
          Length = 1104

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 552 gtagagtgaatctgcatctggatgcttctctgc 584
           |||||| || ||||||||||||||||| |||||
Sbjct: 801 gtagagagagtctgcatctggatgcttttctgc 769

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>dbj|AK086228.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched
           library, clone:D930015B20 product:unclassifiable, full
           insert sequence
          Length = 2436

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 438 aagattgcagagcacacacac 458
           |||||||||||||||||||||
Sbjct: 53  aagattgcagagcacacacac 73

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>gb|AC171014.3| Gallus gallus BAC clone CH261-89A18 from chromosome ul, complete
            sequence
          Length = 181265

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 464  gattctgcatttcctcaagag 484
            |||||||||||||||||||||
Sbjct: 1859 gattctgcatttcctcaagag 1839

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>gb|AC008786.6|AC008786 Homo sapiens chromosome 5 clone CTD-2037L6, complete sequence
          Length = 177472

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 438    aagattgcagagcacacacac 458
              |||||||||||||||||||||
Sbjct: 131061 aagattgcagagcacacacac 131081

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>gb|AC131655.4| Mus musculus BAC clone RP23-233G16 from 8, complete sequence
          Length = 190990

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 438   aagattgcagagcacacacac 458
             |||||||||||||||||||||
Sbjct: 93917 aagattgcagagcacacacac 93937

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>gb|AE017131.1| Yersinia pestis biovar Medievalis str. 91001 section 5 of 16 of the
              complete genome
          Length = 291847

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 261    ggttttgcttttggcattaa 280
              ||||||||||||||||||||
Sbjct: 148704 ggttttgcttttggcattaa 148685

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>gb|AE009952.1| Yersinia pestis KIM, complete genome
          Length = 4600755

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 261     ggttttgcttttggcattaa 280
               ||||||||||||||||||||
Sbjct: 3081499 ggttttgcttttggcattaa 3081480

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>gb|AC161758.3| Mus musculus BAC clone RP23-455F6 from chromosome 14, complete sequence
          Length = 171133

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 574    tgcttctctgcttttctgat 593
              ||||||||||||||||||||
Sbjct: 163917 tgcttctctgcttttctgat 163936

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>gb|AC123043.2| Mus musculus BAC clone RP24-547G7 from 13, complete sequence
          Length = 230940

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 283    gaagcctcgggctcaccaga 302
              ||||||||||||||||||||
Sbjct: 173282 gaagcctcgggctcaccaga 173301

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>emb|AL590624.8| Human DNA sequence from clone RP11-380B22 on chromosome 1 Contains a
             novel gene, complete sequence
          Length = 157779

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 157   atggtcttgaccttgcatac 176
             ||||||||||||||||||||
Sbjct: 20016 atggtcttgaccttgcatac 20035

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>gb|AC044873.13| Homo sapiens chromosome 18, clone RP11-715C4, complete sequence
          Length = 179454

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 463    cgattctgcatttcctcaag 482
              ||||||||||||||||||||
Sbjct: 168391 cgattctgcatttcctcaag 168372

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>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence
          Length = 4744671

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 261     ggttttgcttttggcattaa 280
               ||||||||||||||||||||
Sbjct: 1689855 ggttttgcttttggcattaa 1689874

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>emb|BX842650.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 5/11
          Length = 349723

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 81    ctttcaatgaaatcagacagcgat 104
             |||||||||||||||||| |||||
Sbjct: 61520 ctttcaatgaaatcagaccgcgat 61543

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>gb|AC119275.12| Mus musculus chromosome 8, clone RP24-459A4, complete sequence
          Length = 203937

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 580    tctgcttttctgataagccc 599
              ||||||||||||||||||||
Sbjct: 172611 tctgcttttctgataagccc 172592

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>gb|AC091027.9| Homo sapiens chromosome 18, clone CTD-2382H12, complete sequence
          Length = 128526

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 463 cgattctgcatttcctcaag 482
           ||||||||||||||||||||
Sbjct: 997 cgattctgcatttcctcaag 978

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>gb|AC008870.8| Homo sapiens chromosome 16 clone CTD-2196E14, complete sequence
          Length = 150522

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 466  ttctgcatttcctcaagagg 485
            ||||||||||||||||||||
Sbjct: 2214 ttctgcatttcctcaagagg 2233

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>gb|AC008949.9| Homo sapiens chromosome 5 clone CTD-2335O24, complete sequence
          Length = 163731

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 129    ctgtgcctatcggatctctccatt 152
              ||||||||||| ||||||||||||
Sbjct: 114300 ctgtgcctatcagatctctccatt 114277

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>gb|AC012317.7| Homo sapiens chromosome 16 clone CTD-2385L22, complete sequence
          Length = 133289

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 466   ttctgcatttcctcaagagg 485
             ||||||||||||||||||||
Sbjct: 50812 ttctgcatttcctcaagagg 50831

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>dbj|BS000179.1| Pan troglodytes chromosome 22 clone:RP43-082J09, map 22, complete
              sequences
          Length = 184352

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 50     tcccccaaaaagagtaaatc 69
              ||||||||||||||||||||
Sbjct: 103747 tcccccaaaaagagtaaatc 103728

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>gb|AC138388.3| Mus musculus BAC clone RP23-455J6 from 10, complete sequence
          Length = 164600

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 569   ctggatgcttctctgctttt 588
             ||||||||||||||||||||
Sbjct: 95840 ctggatgcttctctgctttt 95859

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>emb|CT030235.12| Mouse DNA sequence from clone RP23-240F19 on chromosome 16, complete
             sequence
          Length = 236028

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 564   tgcatctggatgcttctctg 583
             ||||||||||||||||||||
Sbjct: 76204 tgcatctggatgcttctctg 76223

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>emb|CT030164.9| Mouse DNA sequence from clone RP23-311P8 on chromosome 12, complete
              sequence
          Length = 224188

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 50     tcccccaaaaagagtaaatc 69
              ||||||||||||||||||||
Sbjct: 139038 tcccccaaaaagagtaaatc 139019

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>emb|AJ414148.1| Yersinia pestis strain CO92 complete genome; segment 8/20
          Length = 210050

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 261   ggttttgcttttggcattaa 280
             ||||||||||||||||||||
Sbjct: 38239 ggttttgcttttggcattaa 38258


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,562,906
Number of Sequences: 3902068
Number of extensions: 5562906
Number of successful extensions: 99315
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99180
Number of HSP's gapped (non-prelim): 135
length of query: 650
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 627
effective length of database: 17,143,297,704
effective search space: 10748847660408
effective search space used: 10748847660408
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result