ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags17c08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MTH1_DROME (Q9VXD9) Probable G-protein coupled receptor Mth-like... 30 1.5
2MCH1_GIBZE (Q4IM48) Probable transporter MCH1 29 2.6

>MTH1_DROME (Q9VXD9) Probable G-protein coupled receptor Mth-like 1 precursor|
           (Protein methuselah-like 1)
          Length = 676

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 172 NKQTQIFTSPHRPLGFMICENTXLGVSPSESMLATLW 282
           N+   IF   + P+G ++C N  L VS +  +   LW
Sbjct: 484 NRNLSIFAYFYGPIGLLLCANIALFVSTTHQLTCGLW 520



to top

>MCH1_GIBZE (Q4IM48) Probable transporter MCH1|
          Length = 572

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 170 VSHPWGLPXLFIQHIFMSLCSCCL 99
           V + W LP L +  +F+ + +CCL
Sbjct: 151 VDNDWSLPFLMLSFVFVGVATCCL 174


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,640,165
Number of Sequences: 219361
Number of extensions: 548119
Number of successful extensions: 830
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 80,573,946
effective HSP length: 78
effective length of database: 63,463,788
effective search space used: 1523130912
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top