Clone Information

BLAST Search Result

Clone Name	rbags16n01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	CD48D_ARATH (Q9SCN8) Putative cell division control protein 48 h...	45	1e-04
2	TBP6_YEAST (P40328) Probable 26S protease subunit YTA6 (TAT-bind...	45	2e-04
3	CD48A_ARATH (P54609) Cell division control protein 48 homolog A ...	44	4e-04
4	ATD1B_BRARE (Q503W7) ATPase family AAA domain-containing protein...	43	8e-04
5	CD48E_ARATH (Q9LZF6) Cell division control protein 48 homolog E ...	42	0.001
6	ATAD1_RAT (Q505J9) ATPase family AAA domain-containing protein 1	42	0.002
7	ATAD1_MOUSE (Q9D5T0) ATPase family AAA domain-containing protein 1	42	0.002
8	ATAD1_HUMAN (Q8NBU5) ATPase family AAA domain-containing protein 1	42	0.002
9	TERA_XENLA (P23787) Transitional endoplasmic reticulum ATPase (T...	42	0.002
10	TERA_RAT (P46462) Transitional endoplasmic reticulum ATPase (TER...	41	0.002
11	TERA_PIG (P03974) Transitional endoplasmic reticulum ATPase (TER...	41	0.002
12	TERA_MOUSE (Q01853) Transitional endoplasmic reticulum ATPase (T...	41	0.002
13	TERA_HUMAN (P55072) Transitional endoplasmic reticulum ATPase (T...	41	0.002
14	Y1156_METJA (Q58556) Cell division cycle protein 48 homolog MJ1156	41	0.003
15	CDC48_SOYBN (P54774) Cell division cycle protein 48 homolog (Val...	40	0.004
16	PSMR_SULTO (Q975U2) Proteasome-activating nucleotidase (Proteaso...	39	0.009
17	SPAST_MOUSE (Q9QYY8) Spastin	39	0.009
18	SPAST_HUMAN (Q9UBP0) Spastin	39	0.009
19	SAV_SULAC (Q07590) SAV protein	39	0.015
20	ATD1A_BRARE (Q7ZZ25) ATPase family AAA domain-containing protein...	38	0.020
21	CDC48_CAPAN (Q96372) Cell division cycle protein 48 homolog	38	0.020
22	TERA1_CAEEL (P54811) Transitional endoplasmic reticulum ATPase h...	38	0.026
23	SAP1_YEAST (P39955) Protein SAP1	37	0.034
24	Y1297_ARCFU (O28972) Cell division cycle protein 48 homolog AF1297	37	0.034
25	TERA2_CAEEL (P54812) Transitional endoplasmic reticulum ATPase h...	37	0.034
26	PSMR_SULSO (Q980M1) Proteasome-activating nucleotidase (Proteaso...	37	0.034
27	MEI1_CAEEL (P34808) Meiotic spindle formation protein mei-1 (EC ...	37	0.044
28	CD48C_ARATH (Q9SS94) Cell division control protein 48 homolog C ...	37	0.058
29	PRS10_SPETR (P62335) 26S protease regulatory subunit S10B (Prote...	36	0.099
30	PRS10_MOUSE (P62334) 26S protease regulatory subunit S10B (Prote...	36	0.099
31	PRS10_HUMAN (P62333) 26S protease regulatory subunit S10B (Prote...	36	0.099
32	VPS4_YEAST (P52917) Vacuolar protein sorting-associated protein ...	35	0.17
33	MSP1_YEAST (P28737) Protein MSP1 (TAT-binding homolog 4)	35	0.17
34	NVL_HUMAN (O15381) Nuclear valosin-containing protein-like (Nucl...	34	0.29
35	CDC48_SCHPO (Q9P3A7) Cell division cycle protein 48	34	0.38
36	CDAT_PLAF7 (P46468) Putative cell division cycle ATPase	33	0.49
37	PRS7_PRUPE (O64982) 26S protease regulatory subunit 7 (26S prote...	33	0.64
38	KATL1_HUMAN (Q9BW62) Katanin p60 ATPase-containing subunit A-lik...	33	0.64
39	PRS7_SPIOL (Q41365) 26S protease regulatory subunit 7 (26S prote...	33	0.64
40	PRS7_ORYSA (Q9FXT9) 26S protease regulatory subunit 7 (26S prote...	33	0.64
41	PRS7_ARATH (Q9SSB5) 26S protease regulatory subunit 7 (26S prote...	33	0.64
42	PRS7_CAEEL (Q18787) Probable 26S protease regulatory subunit 7	33	0.64
43	KATL1_RAT (Q5XIK7) Katanin p60 ATPase-containing subunit A-like ...	33	0.64
44	FTSH4_SYNY3 (P72991) Cell division protein ftsH homolog 4 (EC 3....	33	0.64
45	PSMR_ARCFU (O28303) Proteasome-activating nucleotidase (Proteaso...	33	0.84
46	KATL1_MOUSE (Q8K0T4) Katanin p60 ATPase-containing subunit A-lik...	33	0.84
47	MSP1_CAEEL (P54815) Protein MSP1 homolog	33	0.84
48	AFG2_YEAST (P32794) Protein AFG2	32	1.1
49	CDC48_YEAST (P25694) Cell division control protein 48	32	1.1
50	NVL_MOUSE (Q9DBY8) Nuclear valosin-containing protein-like (Nucl...	32	1.4
51	PRS10_CAEEL (O17071) Probable 26S protease regulatory subunit S1...	32	1.4
52	FTSH_CAPAN (Q39444) Cell division protein ftsH homolog, chloropl...	32	1.4
53	FTSH1_ARATH (Q39102) Cell division protein ftsH homolog 1, chlor...	32	1.9
54	PSMR_AERPE (Q9YAC7) Proteasome-activating nucleotidase (Proteaso...	32	1.9
55	FTSH2_ARATH (Q9FH02) Cell division protein ftsH homolog 2, chlor...	32	1.9
56	SPG7_HUMAN (Q9UQ90) Paraplegin (EC 3.4.24.-) (Spastic paraplegia...	32	1.9
57	PSMR_METKA (Q8TX03) Proteasome-activating nucleotidase (Proteaso...	31	2.4
58	PSMR_METMP (Q6LWR0) Proteasome-activating nucleotidase (Proteaso...	31	2.4
59	FTSH_AQUAE (O67077) Cell division protein ftsH homolog (EC 3.4.2...	31	3.2
60	FTSH_MEDSA (Q9BAE0) Cell division protein ftsH homolog, chloropl...	31	3.2
61	PRS10_SCHPO (O74445) Probable 26S protease subunit rpt4	31	3.2
62	PRS7_RAT (Q63347) 26S protease regulatory subunit 7 (MSS1 protein)	31	3.2
63	PRS7_MOUSE (P46471) 26S protease regulatory subunit 7 (MSS1 prot...	31	3.2
64	PRS7_HUMAN (P35998) 26S protease regulatory subunit 7 (MSS1 prot...	31	3.2
65	YME1_SCHMA (P46508) Protein YME1 homolog (EC 3.4.24.-)	31	3.2
66	PALB_CANGA (Q6FJ28) Calpain-like protease palB/RIM13 (EC 3.4.22....	30	4.2
67	AFG32_HUMAN (Q9Y4W6) AFG3-like protein 2 (EC 3.4.24.-) (Parapleg...	30	4.2
68	SEC18_CANAL (P34732) Vesicular-fusion protein SEC18	30	4.2
69	PRS7_XENLA (P46472) 26S protease regulatory subunit 7 (MSS1 prot...	30	4.2
70	KTNA1_ARATH (Q9SEX2) Katanin p60 ATPase-containing subunit (EC 3...	30	4.2
71	AFG31_MOUSE (Q920A7) AFG3-like protein 1 (EC 3.4.24.-)	30	5.4
72	VAT_THEAC (O05209) VCP-like ATPase	30	7.1
73	RCA1_YEAST (P40341) Mitochondrial respiratory chain complexes as...	30	7.1
74	FTSH_TOBAC (O82150) Cell division protein ftsH homolog, chloropl...	30	7.1
75	CD48B_ARATH (Q9ZPR1) Cell division control protein 48 homolog B ...	30	7.1
76	KTNA1_HUMAN (O75449) Katanin p60 ATPase-containing subunit A1 (E...	30	7.1
77	PSMR_PYRAB (Q9V287) Proteasome-activating nucleotidase (Proteaso...	30	7.1
78	EAF7_DEBHA (Q6BKL0) Chromatin modification-related protein EAF7	29	9.3
79	ENV_BLVB2 (P25506) Env polyprotein precursor [Contains: Coat gly...	29	9.3
80	AF3G2_MOUSE (Q8JZQ2) AFG3-like protein 2 (EC 3.4.24.-)	29	9.3

>CD48D_ARATH (Q9SCN8) Putative cell division control protein 48 homolog D|
           (AtCDC48d) (Transitional endoplasmic reticulum ATPase D)
          Length = 815

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
 Frame = -1

Query: 578 REKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIREILNS--EKDGTRANSPRALR 405
           R+     ++D   +A   +GF+G+DI E+C+++  Y IRE +    EK+  RA SP A+ 
Sbjct: 666 RKSPVAKDVDLRALAKYTQGFSGADITEICQRSCKYAIRENIEKDIEKERKRAESPEAME 725

Query: 404 QSDLEKA 384
           + + E A
Sbjct: 726 EDEEEIA 732

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>TBP6_YEAST (P40328) Probable 26S protease subunit YTA6 (TAT-binding homolog 6)|
          Length = 754

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 18/41 (43%), Positives = 29/41 (70%)
 Frame = -1

Query: 578 REKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIREI 456
           ++K S  ++DY+ I  + EGF+GSD+  L K+AA  PIR++
Sbjct: 663 KQKNSLQDLDYELITEMTEGFSGSDLTSLAKEAAMEPIRDL 703

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>CD48A_ARATH (P54609) Cell division control protein 48 homolog A (AtCDC48a)|
          Length = 809

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 20/66 (30%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
 Frame = -1

Query: 578 REKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIREILNS--EKDGTRANSPRALR 405
           R+     ++D   +A   +GF+G+DI E+C++A  Y IRE +    EK+  R+ +P A+ 
Sbjct: 666 RKSPIAKDVDIGALAKYTQGFSGADITEICQRACKYAIRENIEKDIEKEKRRSENPEAME 725

Query: 404 QSDLEK 387
           +  +++
Sbjct: 726 EDGVDE 731



 Score = 29.3 bits (64), Expect = 9.3
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = -1

Query: 557 NIDYDYIASLCEGFTGSDILELCKQAAFYPIRE---ILNSEKDGTRA 426
           ++D + I+    G+ G+D+  LC +AA   IRE   +++ E D   A
Sbjct: 396 DVDLERISKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDDSIDA 442

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>ATD1B_BRARE (Q503W7) ATPase family AAA domain-containing protein 1-B|
          Length = 362

 Score = 42.7 bits (99), Expect = 8e-04
 Identities = 22/75 (29%), Positives = 42/75 (56%)
 Frame = -1

Query: 605 KQDTSGLY*REKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIREILNSEKDGTRA 426
           ++D   L    +  +S ++   IA   +GF+GSD+ E+C+ AA   +R+ ++ E      
Sbjct: 269 RKDILKLILENENVESAVELSEIAKQTDGFSGSDLREMCRDAALLCVRDFVHQE--SPEE 326

Query: 425 NSPRALRQSDLEKAL 381
           +  R +RQ DL++A+
Sbjct: 327 DFIRPIRQEDLQRAI 341

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>CD48E_ARATH (Q9LZF6) Cell division control protein 48 homolog E (AtCDC48e)|
           (Transitional endoplasmic reticulum ATPase E)
          Length = 810

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
 Frame = -1

Query: 578 REKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIREILNS--EKDGTRANSPRALR 405
           R+     ++D   +A   +GF+G+DI E+C++A  Y IRE +    E +  R+ +P A+ 
Sbjct: 665 RKSPVAKDVDVTALAKYTQGFSGADITEICQRACKYAIRENIEKDIENERRRSQNPEAME 724

Query: 404 QSDLEKALS 378
           +  ++  +S
Sbjct: 725 EDMVDDEVS 733



 Score = 29.3 bits (64), Expect = 9.3
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = -1

Query: 557 NIDYDYIASLCEGFTGSDILELCKQAAFYPIRE---ILNSEKDGTRA 426
           ++D + I+    G+ G+D+  LC +AA   IRE   +++ E D   A
Sbjct: 396 DVDLERISKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDDSIDA 442

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>ATAD1_RAT (Q505J9) ATPase family AAA domain-containing protein 1|
          Length = 361

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
 Frame = -1

Query: 557 NIDYDYIASLCEGFTGSDILELCKQAAFYPIREILNSEKDGTR-ANSPRALRQSDLEKAL 381
           ++D   +A   +GF+GSD+ E+C+ AA   +RE +NS  + +   +  R ++Q DL +A+
Sbjct: 281 HVDLLEVAQETDGFSGSDLKEMCRDAALLCVREYVNSTSEESHDEDEIRPVQQQDLHRAI 340

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>ATAD1_MOUSE (Q9D5T0) ATPase family AAA domain-containing protein 1|
          Length = 361

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
 Frame = -1

Query: 557 NIDYDYIASLCEGFTGSDILELCKQAAFYPIREILNSEKDGTR-ANSPRALRQSDLEKAL 381
           ++D   +A   +GF+GSD+ E+C+ AA   +RE +NS  + +   +  R ++Q DL +A+
Sbjct: 281 HVDLLEVAQETDGFSGSDLKEMCRDAALLCVREYVNSTSEESHDEDEIRPVQQQDLHRAI 340

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>ATAD1_HUMAN (Q8NBU5) ATPase family AAA domain-containing protein 1|
          Length = 361

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
 Frame = -1

Query: 557 NIDYDYIASLCEGFTGSDILELCKQAAFYPIREILNSEKDGTR-ANSPRALRQSDLEKAL 381
           ++D   +A   +GF+GSD+ E+C+ AA   +RE +NS  + +   +  R ++Q DL +A+
Sbjct: 281 HVDLLEVAQETDGFSGSDLKEMCRDAALLCVREYVNSTSEESHDEDEIRPVQQQDLHRAI 340

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>TERA_XENLA (P23787) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit)
          Length = 805

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
 Frame = -1

Query: 578 REKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIREILNSE--KDGTRANSPRAL 408
           R+     ++D D++A +  GF+G+D+ E+C++A    IRE + +E  ++  R  +P A+
Sbjct: 662 RKSPVAKDVDVDFLAKMTNGFSGADLTEICQRACKLAIRESIENEIRRERDRQTNPSAM 720

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>TERA_RAT (P46462) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
 Frame = -1

Query: 578 REKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIREILNSE--KDGTRANSPRAL 408
           R+     ++D +++A +  GF+G+D+ E+C++A    IRE + SE  ++  R  +P A+
Sbjct: 661 RKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAM 719

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>TERA_PIG (P03974) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
 Frame = -1

Query: 578 REKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIREILNSE--KDGTRANSPRAL 408
           R+     ++D +++A +  GF+G+D+ E+C++A    IRE + SE  ++  R  +P A+
Sbjct: 661 RKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAM 719

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>TERA_MOUSE (Q01853) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
 Frame = -1

Query: 578 REKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIREILNSE--KDGTRANSPRAL 408
           R+     ++D +++A +  GF+G+D+ E+C++A    IRE + SE  ++  R  +P A+
Sbjct: 661 RKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAM 719

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>TERA_HUMAN (P55072) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
 Frame = -1

Query: 578 REKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIREILNSE--KDGTRANSPRAL 408
           R+     ++D +++A +  GF+G+D+ E+C++A    IRE + SE  ++  R  +P A+
Sbjct: 661 RKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAM 719

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>Y1156_METJA (Q58556) Cell division cycle protein 48 homolog MJ1156|
          Length = 903

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 16/37 (43%), Positives = 25/37 (67%)
 Frame = -1

Query: 557 NIDYDYIASLCEGFTGSDILELCKQAAFYPIREILNS 447
           ++D DY+A +  GF G+D+  LCK+AA   +R +L S
Sbjct: 368 DVDLDYLADVTHGFVGADLAALCKEAAMRALRRVLPS 404



 Score = 35.0 bits (79), Expect = 0.17
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = -1

Query: 599 DTSGLY*REKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIREILNSEKD 438
           D   ++ R      +++ + +A   EG+TG+DI  LC++AA   +RE +    D
Sbjct: 628 DIFKIHTRSMNLAEDVNLEELAKKTEGYTGADIEALCREAAMLAVRESIGKPWD 681

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>CDC48_SOYBN (P54774) Cell division cycle protein 48 homolog (Valosin-containing|
           protein homolog) (VCP)
          Length = 807

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 22/55 (40%), Positives = 31/55 (56%)
 Frame = -1

Query: 578 REKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIREILNSEKDGTRANSPR 414
           R+     N+D   +A   +GF+G+DI E+C++A  Y IRE  N EKD  R    R
Sbjct: 666 RKSPIAKNVDLRALARHTQGFSGADITEICQRACKYAIRE--NIEKDIERERKSR 718



 Score = 30.0 bits (66), Expect = 5.4
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 557 NIDYDYIASLCEGFTGSDILELCKQAAFYPIRE 459
           ++D + IA    G+ G+D+  LC +AA   IRE
Sbjct: 397 DVDLERIAKDTHGYVGADLAALCTEAALQCIRE 429

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>PSMR_SULTO (Q975U2) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 392

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 16/42 (38%), Positives = 28/42 (66%)
 Frame = -1

Query: 587 LY*REKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIR 462
           +Y ++  +  NI YD +AS+ EGF+G++I  +C +A +  IR
Sbjct: 316 IYLQKMKTDGNIRYDILASMTEGFSGAEIKNVCTEAGYIAIR 357

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>SPAST_MOUSE (Q9QYY8) Spastin|
          Length = 614

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 19/53 (35%), Positives = 31/53 (58%)
 Frame = -1

Query: 539 IASLCEGFTGSDILELCKQAAFYPIREILNSEKDGTRANSPRALRQSDLEKAL 381
           +A + +G++GSD+  L K AA  PIRE+   +     A+  R +R SD  ++L
Sbjct: 535 LARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESL 587

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>SPAST_HUMAN (Q9UBP0) Spastin|
          Length = 616

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 19/53 (35%), Positives = 31/53 (58%)
 Frame = -1

Query: 539 IASLCEGFTGSDILELCKQAAFYPIREILNSEKDGTRANSPRALRQSDLEKAL 381
           +A + +G++GSD+  L K AA  PIRE+   +     A+  R +R SD  ++L
Sbjct: 537 LARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESL 589

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>SAV_SULAC (Q07590) SAV protein|
          Length = 780

 Score = 38.5 bits (88), Expect = 0.015
 Identities = 16/55 (29%), Positives = 32/55 (58%)
 Frame = -1

Query: 605 KQDTSGLY*REKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIREILNSEK 441
           ++D   ++ R      ++D D +A +  G+TG+D+  L K+AA Y +R  ++ +K
Sbjct: 385 RKDILQVHTRNMPITDDVDLDKLAEMTYGYTGADLAALAKEAAIYALRRFVDEKK 439

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>ATD1A_BRARE (Q7ZZ25) ATPase family AAA domain-containing protein 1-A|
          Length = 380

 Score = 38.1 bits (87), Expect = 0.020
 Identities = 16/38 (42%), Positives = 26/38 (68%)
 Frame = -1

Query: 554 IDYDYIASLCEGFTGSDILELCKQAAFYPIREILNSEK 441
           I+   IAS  EG++GSD+ ELC+ AA Y +R+ +  ++
Sbjct: 285 INLKEIASQSEGYSGSDLKELCRDAAMYRVRDYVRKQQ 322

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>CDC48_CAPAN (Q96372) Cell division cycle protein 48 homolog|
          Length = 805

 Score = 38.1 bits (87), Expect = 0.020
 Identities = 19/47 (40%), Positives = 29/47 (61%)
 Frame = -1

Query: 578 REKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIREILNSEKD 438
           R+     +ID   +A   +GF+G+D+ E+C++A  Y IRE  N EKD
Sbjct: 666 RKSPLSKDIDLRALAKHTQGFSGADVTEICQRACKYAIRE--NIEKD 710



 Score = 31.2 bits (69), Expect = 2.4
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
 Frame = -1

Query: 590 GLY*REKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIRE---ILNSEKDGTRAN- 423
           G++ +       +D + I+    G+ G+D+  LC +AA   IRE   +L+ E D   A  
Sbjct: 386 GIHTKNMKLAEEVDLERISKDTHGYVGADLAALCTEAALQCIREKMDVLDLEDDTIDAEV 445

Query: 422 -SPRALRQSDLEKALST 375
            +  A+     + AL T
Sbjct: 446 LNSMAVTNEHFQTALGT 462

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>TERA1_CAEEL (P54811) Transitional endoplasmic reticulum ATPase homolog 1|
           (p97/CDC48 homolog 1)
          Length = 809

 Score = 37.7 bits (86), Expect = 0.026
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = -1

Query: 557 NIDYDYIASLCEGFTGSDILELCKQAAFYPIRE 459
           ++D + IA+ C GF G+D+  LC +AA   IRE
Sbjct: 399 DVDLEQIANECHGFVGADLASLCSEAALQQIRE 431



 Score = 34.3 bits (77), Expect = 0.29
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = -1

Query: 578 REKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIREILNSEKDGTRANSPRALRQS 399
           R+     ++D  ++A    GF+G+D+ E+C++A    IRE +  E    +    R  R  
Sbjct: 669 RKTPLSKDLDLTFLAKNTVGFSGADLTEICQRACKLAIRESIEKEIRIEKERQDRQARGE 728

Query: 398 DL 393
           +L
Sbjct: 729 EL 730

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>SAP1_YEAST (P39955) Protein SAP1|
          Length = 897

 Score = 37.4 bits (85), Expect = 0.034
 Identities = 15/40 (37%), Positives = 26/40 (65%)
 Frame = -1

Query: 575 EKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIREI 456
           +K + +  D+D +  + EG++GSDI  L K AA  P+R++
Sbjct: 807 QKHTLTESDFDELVKITEGYSGSDITSLAKDAAMGPLRDL 846

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>Y1297_ARCFU (O28972) Cell division cycle protein 48 homolog AF1297|
          Length = 733

 Score = 37.4 bits (85), Expect = 0.034
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = -1

Query: 578 REKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIREIL 453
           R+     ++D + +A L  GF G+D+  LCK+AA + +R +L
Sbjct: 364 RKMPLAEDVDLEELAELTNGFVGADLEALCKEAAMHALRRVL 405



 Score = 33.5 bits (75), Expect = 0.49
 Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
 Frame = -1

Query: 578 REKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIREILNSEKDG-TRANSPRALRQ 402
           R K    +++ + +A   EG++G+DI  +C++A    IRE++   K G TR  +  A ++
Sbjct: 638 RGKPLADDVNIEELAEKTEGYSGADIEAVCREAGMLAIRELI---KPGMTREEAKEAAKK 694

Query: 401 SDLEK 387
             + K
Sbjct: 695 LKITK 699

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>TERA2_CAEEL (P54812) Transitional endoplasmic reticulum ATPase homolog 2|
           (p97/CDC48 homolog 2)
          Length = 810

 Score = 37.4 bits (85), Expect = 0.034
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -1

Query: 557 NIDYDYIASLCEGFTGSDILELCKQAAFYPIRE 459
           ++D + +A+ C GF G+D+  LC +AA   IRE
Sbjct: 398 DVDLEQVANECHGFVGADLASLCSEAAIQQIRE 430



 Score = 36.6 bits (83), Expect = 0.058
 Identities = 17/62 (27%), Positives = 34/62 (54%)
 Frame = -1

Query: 578 REKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIREILNSEKDGTRANSPRALRQS 399
           R+    +++D +++A    GF+G+D+ E+C++A    IRE +  E    +    R+ R  
Sbjct: 667 RKTPLSADLDLNFLAKNTVGFSGADLTEICQRACKLAIRESIEREIRQEKERQDRSARGE 726

Query: 398 DL 393
           +L
Sbjct: 727 EL 728

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>PSMR_SULSO (Q980M1) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 393

 Score = 37.4 bits (85), Expect = 0.034
 Identities = 15/43 (34%), Positives = 29/43 (67%)
 Frame = -1

Query: 587 LY*REKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIRE 459
           +Y ++   + NI+ + ++ L EGF+G+DI  +C +AA+  IR+
Sbjct: 316 IYLKKMKIEDNINLELLSQLTEGFSGADIKNVCVEAAYMAIRD 358

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>MEI1_CAEEL (P34808) Meiotic spindle formation protein mei-1 (EC 3.6.4.3)|
           (Katanin ATPase-containing subunit)
          Length = 472

 Score = 37.0 bits (84), Expect = 0.044
 Identities = 18/39 (46%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
 Frame = -1

Query: 575 EKTSKSN-IDYDYIASLCEGFTGSDILELCKQAAFYPIR 462
           E T KS+ I+YD +A+  EGF+G+D++ LC+ AA   +R
Sbjct: 376 EGTPKSDEINYDDLAARTEGFSGADVVSLCRTAAINVLR 414

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>CD48C_ARATH (Q9SS94) Cell division control protein 48 homolog C (AtCDC48c)|
          Length = 820

 Score = 36.6 bits (83), Expect = 0.058
 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
 Frame = -1

Query: 578 REKTSKSNIDYDYIA-SLCEGFTGSDILELCKQAAFYPIREIL---NSEKDGTRANSPRA 411
           R+K    ++D D IA + CEGF+G+D+  L ++A F  + E++    S +D     +   
Sbjct: 709 RKKPIDPSVDLDGIAKNNCEGFSGADLAHLVQKATFQAVEEMIGSSESSEDDVTDITQCT 768

Query: 410 LRQSDLEKALS 378
           ++    E+ALS
Sbjct: 769 IKTRHFEQALS 779

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>PRS10_SPETR (P62335) 26S protease regulatory subunit S10B (Proteasome subunit|
           p42) (Proteasome 26S subunit ATPase 6) (Conserved ATPase
           domain protein 44) (CADp44)
          Length = 389

 Score = 35.8 bits (81), Expect = 0.099
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -1

Query: 569 TSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIR 462
           T    IDY+ I  L +GF G+D+  +C +A  + IR
Sbjct: 321 TKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIR 356

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>PRS10_MOUSE (P62334) 26S protease regulatory subunit S10B (Proteasome subunit|
           p42) (Proteasome 26S subunit ATPase 6)
          Length = 389

 Score = 35.8 bits (81), Expect = 0.099
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -1

Query: 569 TSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIR 462
           T    IDY+ I  L +GF G+D+  +C +A  + IR
Sbjct: 321 TKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIR 356

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>PRS10_HUMAN (P62333) 26S protease regulatory subunit S10B (Proteasome subunit|
           p42) (Proteasome 26S subunit ATPase 6)
          Length = 389

 Score = 35.8 bits (81), Expect = 0.099
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -1

Query: 569 TSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIR 462
           T    IDY+ I  L +GF G+D+  +C +A  + IR
Sbjct: 321 TKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIR 356

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>VPS4_YEAST (P52917) Vacuolar protein sorting-associated protein VPS4 (END13|
           protein) (DOA4-independent degradation protein 6)
          Length = 437

 Score = 35.0 bits (79), Expect = 0.17
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 8/53 (15%)
 Frame = -1

Query: 551 DYDYIASLCEGFTGSDILELCKQAAFYPIREI--------LNSEKDGTRANSP 417
           DY  + ++ EG++GSDI  + K A   PIR+I        +++E D TR  +P
Sbjct: 323 DYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTP 375

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>MSP1_YEAST (P28737) Protein MSP1 (TAT-binding homolog 4)|
          Length = 362

 Score = 35.0 bits (79), Expect = 0.17
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -1

Query: 572 KTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIREILNSEK 441
           K  +   D   IA   +GF+GSD+ ELC++AA    +E +  ++
Sbjct: 275 KLDEDEFDLQLIADNTKGFSGSDLKELCREAALDAAKEYIKQKR 318

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>NVL_HUMAN (O15381) Nuclear valosin-containing protein-like (Nuclear VCP-like|
           protein) (NVLp)
          Length = 856

 Score = 34.3 bits (77), Expect = 0.29
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = -1

Query: 551 DYDYIASLCEGFTGSDILELCKQAAFYPIREILNSEKDGTRAN 423
           D+ ++A L  GF G+D++ LC++AA   +  +L   ++  + N
Sbjct: 458 DFCHLAHLTPGFVGADLMALCREAAMCAVNRVLMKLQEQQKKN 500

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>CDC48_SCHPO (Q9P3A7) Cell division cycle protein 48|
          Length = 815

 Score = 33.9 bits (76), Expect = 0.38
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 557 NIDYDYIASLCEGFTGSDILELCKQAAFYPIRE 459
           ++D + IA+   G+ GSD+  LC +AA   IRE
Sbjct: 413 DVDLEQIAAETHGYVGSDLASLCSEAAMQQIRE 445

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>CDAT_PLAF7 (P46468) Putative cell division cycle ATPase|
          Length = 1229

 Score = 33.5 bits (75), Expect = 0.49
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = -1

Query: 572 KTSKSNIDYDY----IASLCEGFTGSDILELCKQAAFYPIRE 459
           KT K  +D D     IA  C G+ G+D+ +LC +AA   I+E
Sbjct: 707 KTKKMKLDPDVNLRKIAKECHGYVGADLAQLCFEAAIQCIKE 748



 Score = 30.0 bits (66), Expect = 5.4
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 557  NIDYDYIASLCEGFTGSDILELCKQAAFYPIREILN 450
            ++D   +A   EGF+G+DI  LC+ A    I+E ++
Sbjct: 1124 DVDIHDMAKRTEGFSGADITNLCQSAVNEAIKETIH 1159

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>PRS7_PRUPE (O64982) 26S protease regulatory subunit 7 (26S proteasome subunit|
           7) (26S proteasome AAA-ATPase subunit RPT1) (Regulatory
           particle triple-A ATPase subunit 1)
          Length = 425

 Score = 33.1 bits (74), Expect = 0.64
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 578 REKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIR 462
           R    + +I ++ +A LC   TG+DI  +C +A  Y IR
Sbjct: 352 RTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIR 390

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>KATL1_HUMAN (Q9BW62) Katanin p60 ATPase-containing subunit A-like 1 (EC|
           3.6.4.3) (Katanin p60 subunit A-like 1) (p60
           katanin-like 1)
          Length = 490

 Score = 33.1 bits (74), Expect = 0.64
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = -1

Query: 578 REKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIREILNSEKDGTRANSPRALRQS 399
           RE     +I  + IA   EG++G+DI  +C+ A+   +R  +N    G      RAL + 
Sbjct: 395 REVELDPDIQLEDIAEKIEGYSGADITNVCRDASLMAMRRRIN----GLSPEEIRALSKE 450

Query: 398 DLE 390
           +L+
Sbjct: 451 ELQ 453

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>PRS7_SPIOL (Q41365) 26S protease regulatory subunit 7 (26S proteasome subunit|
           7) (26S proteasome AAA-ATPase subunit RPT1) (Regulatory
           particle triple-A ATPase subunit 1)
          Length = 426

 Score = 33.1 bits (74), Expect = 0.64
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 578 REKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIR 462
           R    + +I ++ +A LC   TG+DI  +C +A  Y IR
Sbjct: 353 RTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIR 391

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>PRS7_ORYSA (Q9FXT9) 26S protease regulatory subunit 7 (26S proteasome subunit|
           7) (26S proteasome AAA-ATPase subunit RPT1) (Regulatory
           particle triple-A ATPase subunit 1)
          Length = 426

 Score = 33.1 bits (74), Expect = 0.64
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 578 REKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIR 462
           R    + +I ++ +A LC   TG+DI  +C +A  Y IR
Sbjct: 353 RTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIR 391

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>PRS7_ARATH (Q9SSB5) 26S protease regulatory subunit 7 (26S proteasome subunit|
           7) (26S proteasome AAA-ATPase subunit RPT1a) (Regulatory
           particle triple-A ATPase subunit 1a)
          Length = 426

 Score = 33.1 bits (74), Expect = 0.64
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 578 REKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIR 462
           R    + +I ++ +A LC   TG+DI  +C +A  Y IR
Sbjct: 353 RTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIR 391

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>PRS7_CAEEL (Q18787) Probable 26S protease regulatory subunit 7|
          Length = 435

 Score = 33.1 bits (74), Expect = 0.64
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -1

Query: 578 REKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIR 462
           ++ + + +I YD +A LC   TG++I  +C +A  + IR
Sbjct: 362 KQMSVERDIRYDLLARLCPNSTGAEIRSVCTEAGMFAIR 400

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>KATL1_RAT (Q5XIK7) Katanin p60 ATPase-containing subunit A-like 1 (EC|
           3.6.4.3) (Katanin p60 subunit A-like 1) (p60
           katanin-like 1)
          Length = 488

 Score = 33.1 bits (74), Expect = 0.64
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = -1

Query: 578 REKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIREILNSEKDGTRANSPRALRQS 399
           RE     +I  + IA   EG++G+DI  +C+ A+   +R  +N    G      RAL + 
Sbjct: 393 REVELDPDIHLEDIAEKTEGYSGADITNICRDASLMAMRRRIN----GLSPEEIRALSKE 448

Query: 398 DLE 390
           +L+
Sbjct: 449 ELQ 451

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>FTSH4_SYNY3 (P72991) Cell division protein ftsH homolog 4 (EC 3.4.24.-)|
          Length = 616

 Score = 33.1 bits (74), Expect = 0.64
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -1

Query: 605 KQDTSGLY*REKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIREIL 453
           +++   ++ R KT   ++D D IA    GFTG+D+  L  +AA    R  L
Sbjct: 336 RREILNVHARGKTLSQDVDLDKIARRTPGFTGADLSNLLNEAAILAARRNL 386

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>PSMR_ARCFU (O28303) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 398

 Score = 32.7 bits (73), Expect = 0.84
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -1

Query: 578 REKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIRE 459
           R+     ++D+  +A + EG +G+DI  +C +A  + IRE
Sbjct: 326 RKMKLAEDVDFKELARITEGASGADIKAICTEAGMFAIRE 365

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>KATL1_MOUSE (Q8K0T4) Katanin p60 ATPase-containing subunit A-like 1 (EC|
           3.6.4.3) (Katanin p60 subunit A-like 1) (p60
           katanin-like 1)
          Length = 488

 Score = 32.7 bits (73), Expect = 0.84
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = -1

Query: 578 REKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIREILNSEKDGTRANSPRALRQS 399
           RE     ++  + IA   EG++G+DI  +C+ A+   +R  +N    G      RAL + 
Sbjct: 393 REVELDPDVHLEDIADKTEGYSGADITNICRDASLMAMRRRIN----GLSPEEIRALSKE 448

Query: 398 DLE 390
           +L+
Sbjct: 449 ELQ 451

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>MSP1_CAEEL (P54815) Protein MSP1 homolog|
          Length = 342

 Score = 32.7 bits (73), Expect = 0.84
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = -1

Query: 578 REKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIREILNSEKDGTRANSPRALRQS 399
           R +   + ++   IA   EG +GSD+ E+C+ A     +  + S   G   N    L QS
Sbjct: 264 RNEKINNTVNLGEIAQAAEGLSGSDLKEVCRLALLARAKATVAS---GGSVNQLLPLEQS 320

Query: 398 DLEKAL 381
           D E A+
Sbjct: 321 DFESAV 326

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>AFG2_YEAST (P32794) Protein AFG2|
          Length = 780

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = -1

Query: 569 TSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIREILNSEK 441
           T +S +D   +A   EG++G++++ LC++A    I E L+  K
Sbjct: 702 TEESGVDLHELADRTEGYSGAEVVLLCQEAGLAAIMEDLDVAK 744

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>CDC48_YEAST (P25694) Cell division control protein 48|
          Length = 835

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -1

Query: 557 NIDYDYIASLCEGFTGSDILELCKQAAFYPIRE 459
           ++D + +A+   G+ G+DI  LC +AA   IRE
Sbjct: 403 DVDLEALAAETHGYVGADIASLCSEAAMQQIRE 435



 Score = 29.6 bits (65), Expect = 7.1
 Identities = 12/46 (26%), Positives = 28/46 (60%)
 Frame = -1

Query: 578 REKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIREILNSEK 441
           R+   +  ++   IA   +GF+G+D+L + ++AA Y I++ + + +
Sbjct: 672 RKTPLEPGLELTAIAKATQGFSGADLLYIVQRAAKYAIKDSIEAHR 717

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>NVL_MOUSE (Q9DBY8) Nuclear valosin-containing protein-like (Nuclear VCP-like|
           protein) (NVLp)
          Length = 855

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 11/37 (29%), Positives = 24/37 (64%)
 Frame = -1

Query: 551 DYDYIASLCEGFTGSDILELCKQAAFYPIREILNSEK 441
           ++ ++A L  GF G+D++ LC++AA   +  +L  ++
Sbjct: 457 NFCHLAHLTPGFVGADLMALCREAAMCAVNRVLMKQQ 493

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>PRS10_CAEEL (O17071) Probable 26S protease regulatory subunit S10B (Proteasome|
           regulatory particle ATPase-like protein 4)
          Length = 406

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 569 TSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIR 462
           T    ID++ +  L +GF+ +D+  +C +A  + IR
Sbjct: 338 TKHGEIDFEAVVKLSDGFSAADLRNVCTEAGMFAIR 373

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>FTSH_CAPAN (Q39444) Cell division protein ftsH homolog, chloroplast precursor|
           (EC 3.4.24.-) (Fragment)
          Length = 662

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -1

Query: 578 REKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIREIL 453
           R K    ++D+D IA    GFTG+D+  L  +AA    R  L
Sbjct: 414 RGKALAKDVDFDKIARRTPGFTGADLQNLMNEAAILAARRDL 455

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>FTSH1_ARATH (Q39102) Cell division protein ftsH homolog 1, chloroplast|
           precursor (EC 3.4.24.-)
          Length = 716

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 578 REKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPI-REILNSEKD 438
           R K    ++D+D +A    GFTG+D+  L  +AA     RE+    KD
Sbjct: 446 RGKALGKDVDFDKVARRTPGFTGADLQNLMNEAAILAARRELKEISKD 493

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>PSMR_AERPE (Q9YAC7) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 409

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = -1

Query: 590 GLY*REKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIR 462
           G++ R+     ++D + IA L EGF+G+D+  +  +A +  IR
Sbjct: 320 GIHTRKAKMAPDVDLEAIAKLTEGFSGADLKAVVVEAGYNAIR 362

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>FTSH2_ARATH (Q9FH02) Cell division protein ftsH homolog 2, chloroplast|
           precursor (EC 3.4.24.-)
          Length = 704

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 578 REKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPI-REILNSEKD 438
           R K    ++DY+ +A    GFTG+D+  L  +AA     RE+    KD
Sbjct: 434 RGKAIGKDVDYEKVARRTPGFTGADLQNLMNEAAILAARRELKEISKD 481

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>SPG7_HUMAN (Q9UQ90) Paraplegin (EC 3.4.24.-) (Spastic paraplegia protein 7)|
          Length = 795

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 569 TSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIRE 459
           T  S      +A L  GF+G+DI  +C +AA +  RE
Sbjct: 499 TQSSTFYSQRLAELTPGFSGADIANICNEAALHAARE 535

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>PSMR_METKA (Q8TX03) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 436

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 578 REKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIRE 459
           R+     ++D   +A + EG +G+DI  +C +A    IRE
Sbjct: 364 RDMNLAEDVDLQKLAKITEGASGADIKAICTEAGMMAIRE 403

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>PSMR_METMP (Q6LWR0) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 407

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 575 EKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIRE 459
           EK +   +D   +A + E   G+D+  +C +A  + IRE
Sbjct: 333 EKMNLKGVDLREVAKIAENMVGADLKAVCTEAGMFAIRE 371

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>FTSH_AQUAE (O67077) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 634

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 578 REKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIRE 459
           R K    ++D +++A    GFTG+D+  L  +AA    R+
Sbjct: 340 RNKKLAKDVDLEFVARATPGFTGADLENLLNEAALLAARK 379

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>FTSH_MEDSA (Q9BAE0) Cell division protein ftsH homolog, chloroplast precursor|
           (EC 3.4.24.-)
          Length = 706

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -1

Query: 578 REKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIREIL 453
           R K    ++D+D IA    GFTG D+  L  +AA    R  L
Sbjct: 437 RGKALAKDVDFDKIARRTPGFTGVDLQNLMNEAAILAARRDL 478

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>PRS10_SCHPO (O74445) Probable 26S protease subunit rpt4|
          Length = 388

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 575 EKTSKSN-IDYDYIASLCEGFTGSDILELCKQAAFYPIRE 459
           EK SK   IDY+ +  L +G  G+D+  +  +A F  I+E
Sbjct: 317 EKVSKQGEIDYEALVKLTDGTNGADLRNVVTEAGFIAIKE 356

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>PRS7_RAT (Q63347) 26S protease regulatory subunit 7 (MSS1 protein)|
          Length = 432

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = -1

Query: 578 REKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPI--REILNSEKD 438
           R  + + +I ++ +A LC   TG++I  +C +A  + I  R  + +EKD
Sbjct: 359 RSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKD 407

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>PRS7_MOUSE (P46471) 26S protease regulatory subunit 7 (MSS1 protein)|
          Length = 432

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = -1

Query: 578 REKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPI--REILNSEKD 438
           R  + + +I ++ +A LC   TG++I  +C +A  + I  R  + +EKD
Sbjct: 359 RSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKD 407

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>PRS7_HUMAN (P35998) 26S protease regulatory subunit 7 (MSS1 protein)|
          Length = 432

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = -1

Query: 578 REKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPI--REILNSEKD 438
           R  + + +I ++ +A LC   TG++I  +C +A  + I  R  + +EKD
Sbjct: 359 RSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKD 407

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>YME1_SCHMA (P46508) Protein YME1 homolog (EC 3.4.24.-)|
          Length = 662

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = -1

Query: 587 LY*REKTSKSNIDYDYIASLCEGFTGSDILELCKQAA 477
           LY ++  + SNID + +A    G+TG+DI  L  QAA
Sbjct: 345 LYLKKVKTGSNIDIEKLAHGTVGYTGADIQNLVNQAA 381

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>PALB_CANGA (Q6FJ28) Calpain-like protease palB/RIM13 (EC 3.4.22.-) (Cysteine|
           protease RIM13)
          Length = 713

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 376 VERAFSRSDCLKALGLFALVPSFSLFKISL 465
           V +AFSR +CL A+G    VP  ++F + L
Sbjct: 246 VHKAFSRGECLIAMGTGGFVPKENIFGVKL 275

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>AFG32_HUMAN (Q9Y4W6) AFG3-like protein 2 (EC 3.4.24.-) (Paraplegin-like|
           protein)
          Length = 797

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -1

Query: 539 IASLCEGFTGSDILELCKQAAFYPIREILNS 447
           +ASL  GF+G+D+  +C +AA    R + +S
Sbjct: 509 LASLTPGFSGADVANVCNEAALIAARHLSDS 539

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>SEC18_CANAL (P34732) Vesicular-fusion protein SEC18|
          Length = 794

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = -1

Query: 560 SNIDYDYIASLCEGFTGSDILELCKQAAFYPI 465
           S++++D +++L + FTG++I  LC  A  Y I
Sbjct: 480 SDVNFDELSTLTKNFTGAEIEGLCNSAKSYAI 511

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>PRS7_XENLA (P46472) 26S protease regulatory subunit 7 (MSS1 protein)|
          Length = 433

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -1

Query: 578 REKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIR 462
           R  + + +I ++ +A LC   TG++I  +C +A  + IR
Sbjct: 360 RSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIR 398

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>KTNA1_ARATH (Q9SEX2) Katanin p60 ATPase-containing subunit (EC 3.6.4.3)|
           (Katanin p60 subunit) (p60 katanin) (Atp60) (CAD ATPase)
           (Katanin 1) (BOTERO1 protein) (ECTOPIC ROOT HAIR 3
           protein) (FAT ROOT protein) (FRAGILE FIBER 2 protein)
           (AtAAA1)
          Length = 523

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
 Frame = -1

Query: 560 SNIDYDYIASLCEGFTGSDILELCKQAAFYPIR---------EILNSEKDGTRANSPRAL 408
           S+++ + +A   EG++G D+  +C+ A+   +R         EI N  KD   +N P A+
Sbjct: 433 SDVNIEDVARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDDI-SNDPVAM 491

Query: 407 RQSDLEKAL 381
              D E+A+
Sbjct: 492 --CDFEEAI 498

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>AFG31_MOUSE (Q920A7) AFG3-like protein 1 (EC 3.4.24.-)|
          Length = 663

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 539 IASLCEGFTGSDILELCKQAAFYPIREILNSEKD 438
           +A+L  GFTG+DI  +C +AA    R +  S ++
Sbjct: 375 LAALTPGFTGADISNVCNEAALIAARHLSPSVQE 408

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>VAT_THEAC (O05209) VCP-like ATPase|
          Length = 745

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 557 NIDYDYIASLCEGFTGSDILELCKQAAFYPIRE 459
           ++D + IA   EG+ G+D+  LC++A     RE
Sbjct: 657 DVDLNDIAQRTEGYVGADLENLCREAGMNAYRE 689

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>RCA1_YEAST (P40341) Mitochondrial respiratory chain complexes assembly protein|
           RCA1 (EC 3.4.24.-) (TAT-binding homolog 12)
          Length = 825

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -1

Query: 539 IASLCEGFTGSDILELCKQAAFYPIREILNSEKDGTRAN 423
           +A+L  GF+G+DI  +C +AA    R    S++D  + N
Sbjct: 548 LAALTPGFSGADIANVCNEAALIAAR----SDEDAVKLN 582

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>FTSH_TOBAC (O82150) Cell division protein ftsH homolog, chloroplast precursor|
           (EC 3.4.24.-) (DS9)
          Length = 714

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 578 REKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPI-REILNSEKD 438
           R K    ++D++ IA    G+TG+D+  L  +AA     RE+    KD
Sbjct: 437 RGKALTKDVDFEKIARRTPGYTGADLQNLMNEAAILAARRELKEISKD 484

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>CD48B_ARATH (Q9ZPR1) Cell division control protein 48 homolog B (AtCDC48b)|
          Length = 603

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 587 LY*REKTSKSNIDYDYIASLCEGFTGSDILELCKQA 480
           LY ++     ++D   IA  C G+ G+D+  LC++A
Sbjct: 207 LYTKKVNLDPSVDLQAIAISCNGYVGADLEALCREA 242

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>KTNA1_HUMAN (O75449) Katanin p60 ATPase-containing subunit A1 (EC 3.6.4.3)|
           (Katanin p60 subunit A1) (p60 katanin)
          Length = 491

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 578 REKTSKSNIDYDYIASLCEGFTGSDILELCKQAAFYPIR 462
           RE     ++D   IA   EG++G+DI  +C+ A+   +R
Sbjct: 396 RELELADDVDLASIAENMEGYSGADITNVCRDASLMAMR 434

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>PSMR_PYRAB (Q9V287) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 399

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 557 NIDYDYIASLCEGFTGSDILELCKQAAFYPIRE 459
           N+D   IA + EG +G+D+  +  +A  + IRE
Sbjct: 331 NVDLRVIAEITEGASGADLKAIATEAGMFAIRE 363

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>EAF7_DEBHA (Q6BKL0) Chromatin modification-related protein EAF7|
          Length = 323

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 143 PKHQCRLCQLQLTSKTREQPHDANRTNTYAESR*VMPALTPLR 271
           P  Q      +   K+  Q  DA+++NT    R ++PA TPL+
Sbjct: 268 PAQQTPTASAKRRKKSEVQESDADKSNTRRSKRSLVPATTPLK 310

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>ENV_BLVB2 (P25506) Env polyprotein precursor [Contains: Coat glycoprotein|
           GP51; Coat protein GP30]
          Length = 515

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
 Frame = -2

Query: 361 RRPQAVRRQVSSLL-----CGPVRRILKMTRSLKNPQWSKSWHYLPRFSICI 221
           RRPQ + R VS  L     C P++   + + SL N QW  +++   +FSI I
Sbjct: 9   RRPQPIIRWVSLTLTLLSLCQPIQT-WRCSLSLGNQQWMTTYNQEAKFSIAI 59

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>AF3G2_MOUSE (Q8JZQ2) AFG3-like protein 2 (EC 3.4.24.-)|
          Length = 802

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 539 IASLCEGFTGSDILELCKQAAFYPIREI 456
           +ASL  GF+G+D+  +C +AA    R +
Sbjct: 508 LASLTPGFSGADVANVCNEAALIAARHL 535


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,484,518
Number of Sequences: 219361
Number of extensions: 1756168
Number of successful extensions: 4486
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 4364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4485
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5367617986
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result