| Clone Name | rbags16n01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK119628.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-128-A01, full insert sequence Length = 1545 Score = 178 bits (90), Expect = 1e-41 Identities = 206/242 (85%), Gaps = 2/242 (0%) Strand = Plus / Minus Query: 364 ccctttctagatgttgaaagagctttctccaggtccgattgcctcaaggctcttggactg 423 ||||||||||| ||||| | |||||||||||| |||||||||||||||| |||||| | Sbjct: 1177 ccctttctagacgttgataaagctttctccagatccgattgcctcaagggtcttggttta 1118 Query: 424 tttgctcttgtcccatctttctcgctgttcaaaatctctctgataggatagaatgcagcc 483 | |||| || |||||||||||| ||||||| | ||| |||||||| |||||||| || Sbjct: 1117 tctgcttttcgcccatctttctcattgttcaacagctccctgatagggtagaatgctgct 1058 Query: 484 tgcttgcacagttctaggatgtctgacccagtaaagccctcacacaagctggcaatgtaa 543 ||||||||||||||||| |||||||| |||||||| ||||| || | | ||| |||||| Sbjct: 1057 tgcttgcacagttctagaatgtctgatccagtaaatccctcgcatagaccggcgatgtaa 998 Query: 544 tcgtaatcaatgttagacttcgacgttttctcccttcagtataaccctgaagtatcttgc 603 ||||||| |||||||| | ||||| ||||||||||||| || |||||| ||||||||||| Sbjct: 997 tcgtaattaatgttaggc-tcgacattttctcccttcaatacaaccct-aagtatcttgc 940 Query: 604 tt 605 || Sbjct: 939 tt 938 Score = 54.0 bits (27), Expect = 5e-04 Identities = 43/47 (91%), Gaps = 1/47 (2%) Strand = Plus / Minus Query: 147 aacatcagtgcag-gctttgccagctgcaattaacttcaaaaaccag 192 |||||||||||| || ||||||||||| |||||||||||||||||| Sbjct: 1526 aacatcagtgcaaagcattgccagctgccattaacttcaaaaaccag 1480
>dbj|AK100047.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013154C19, full insert sequence Length = 1796 Score = 178 bits (90), Expect = 1e-41 Identities = 206/242 (85%), Gaps = 2/242 (0%) Strand = Plus / Minus Query: 364 ccctttctagatgttgaaagagctttctccaggtccgattgcctcaaggctcttggactg 423 ||||||||||| ||||| | |||||||||||| |||||||||||||||| |||||| | Sbjct: 1179 ccctttctagacgttgataaagctttctccagatccgattgcctcaagggtcttggttta 1120 Query: 424 tttgctcttgtcccatctttctcgctgttcaaaatctctctgataggatagaatgcagcc 483 | |||| || |||||||||||| ||||||| | ||| |||||||| |||||||| || Sbjct: 1119 tctgcttttcgcccatctttctcattgttcaacagctccctgatagggtagaatgctgct 1060 Query: 484 tgcttgcacagttctaggatgtctgacccagtaaagccctcacacaagctggcaatgtaa 543 ||||||||||||||||| |||||||| |||||||| ||||| || | | ||| |||||| Sbjct: 1059 tgcttgcacagttctagaatgtctgatccagtaaatccctcgcatagaccggcgatgtaa 1000 Query: 544 tcgtaatcaatgttagacttcgacgttttctcccttcagtataaccctgaagtatcttgc 603 ||||||| |||||||| | ||||| ||||||||||||| || |||||| ||||||||||| Sbjct: 999 tcgtaattaatgttaggc-tcgacattttctcccttcaatacaaccct-aagtatcttgc 942 Query: 604 tt 605 || Sbjct: 941 tt 940 Score = 54.0 bits (27), Expect = 5e-04 Identities = 43/47 (91%), Gaps = 1/47 (2%) Strand = Plus / Minus Query: 147 aacatcagtgcag-gctttgccagctgcaattaacttcaaaaaccag 192 |||||||||||| || ||||||||||| |||||||||||||||||| Sbjct: 1528 aacatcagtgcaaagcattgccagctgccattaacttcaaaaaccag 1482
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 133 bits (67), Expect = 7e-28 Identities = 147/171 (85%), Gaps = 2/171 (1%) Strand = Plus / Minus Query: 435 cccatctttctcgctgttcaaaatctctctgataggatagaatgcagcctgcttgcacag 494 |||||||||||| ||||||| | ||| |||||||| |||||||| || ||||||||||| Sbjct: 29819199 cccatctttctcattgttcaacagctccctgatagggtagaatgctgcttgcttgcacag 29819140 Query: 495 ttctaggatgtctgacccagtaaagccctcacacaagctggcaatgtaatcgtaatcaat 554 |||||| |||||||| |||||||| ||||| || | | ||| ||||||||||||| ||| Sbjct: 29819139 ttctagaatgtctgatccagtaaatccctcgcatagaccggcgatgtaatcgtaattaat 29819080 Query: 555 gttagacttcgacgttttctcccttcagtataaccctgaagtatcttgctt 605 ||||| | ||||| ||||||||||||| || |||||| ||||||||||||| Sbjct: 29819079 gttaggc-tcgacattttctcccttcaatacaaccct-aagtatcttgctt 29819031 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 364 ccctttctagatgttgaaagagctttctccaggtccgattgcctcaaggctcttgg 419 ||||||||||| ||||| | |||||||||||| |||||||||||||||| |||||| Sbjct: 29819592 ccctttctagacgttgataaagctttctccagatccgattgcctcaagggtcttgg 29819537 Score = 54.0 bits (27), Expect = 5e-04 Identities = 43/47 (91%), Gaps = 1/47 (2%) Strand = Plus / Minus Query: 147 aacatcagtgcag-gctttgccagctgcaattaacttcaaaaaccag 192 |||||||||||| || ||||||||||| |||||||||||||||||| Sbjct: 29819941 aacatcagtgcaaagcattgccagctgccattaacttcaaaaaccag 29819895
>dbj|AP003614.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0481E08 Length = 171965 Score = 133 bits (67), Expect = 7e-28 Identities = 147/171 (85%), Gaps = 2/171 (1%) Strand = Plus / Minus Query: 435 cccatctttctcgctgttcaaaatctctctgataggatagaatgcagcctgcttgcacag 494 |||||||||||| ||||||| | ||| |||||||| |||||||| || ||||||||||| Sbjct: 14712 cccatctttctcattgttcaacagctccctgatagggtagaatgctgcttgcttgcacag 14653 Query: 495 ttctaggatgtctgacccagtaaagccctcacacaagctggcaatgtaatcgtaatcaat 554 |||||| |||||||| |||||||| ||||| || | | ||| ||||||||||||| ||| Sbjct: 14652 ttctagaatgtctgatccagtaaatccctcgcatagaccggcgatgtaatcgtaattaat 14593 Query: 555 gttagacttcgacgttttctcccttcagtataaccctgaagtatcttgctt 605 ||||| | ||||| ||||||||||||| || |||||| ||||||||||||| Sbjct: 14592 gttaggc-tcgacattttctcccttcaatacaaccct-aagtatcttgctt 14544 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 364 ccctttctagatgttgaaagagctttctccaggtccgattgcctcaaggctcttgg 419 ||||||||||| ||||| | |||||||||||| |||||||||||||||| |||||| Sbjct: 15105 ccctttctagacgttgataaagctttctccagatccgattgcctcaagggtcttgg 15050 Score = 54.0 bits (27), Expect = 5e-04 Identities = 43/47 (91%), Gaps = 1/47 (2%) Strand = Plus / Minus Query: 147 aacatcagtgcag-gctttgccagctgcaattaacttcaaaaaccag 192 |||||||||||| || ||||||||||| |||||||||||||||||| Sbjct: 15454 aacatcagtgcaaagcattgccagctgccattaacttcaaaaaccag 15408
>gb|AC121291.18| Mus musculus chromosome 5, clone RP23-170M15, complete sequence Length = 192717 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 426 tgctcttgtcccatctttct 445 |||||||||||||||||||| Sbjct: 70113 tgctcttgtcccatctttct 70132
>ref|XM_453204.1| Kluyveromyces lactis NRRL Y-1140, KLLA0D03058g predicted mRNA Length = 4206 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 atagaattctgtattttcca 124 |||||||||||||||||||| Sbjct: 1787 atagaattctgtattttcca 1768
>gb|AC118206.11| Mus musculus chromosome 3, clone RP24-159J16, complete sequence Length = 255036 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 attttccacacagagaacca 136 |||||||||||||||||||| Sbjct: 53695 attttccacacagagaacca 53714
>gb|AC125132.4| Mus musculus BAC clone RP24-314B3 from chromosome 8, complete sequence Length = 190472 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 tcaaaatctctctgatagga 471 |||||||||||||||||||| Sbjct: 130250 tcaaaatctctctgatagga 130231
>gb|AC129606.4| Mus musculus BAC clone RP23-128L6 from 8, complete sequence Length = 235915 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 525 acacaagctggcaatgtaat 544 |||||||||||||||||||| Sbjct: 212788 acacaagctggcaatgtaat 212769
>gb|AC116465.8| Mus musculus chromosome 10, clone RP23-64J3, complete sequence Length = 237801 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 413 ctcttggactgtttgctctt 432 |||||||||||||||||||| Sbjct: 106059 ctcttggactgtttgctctt 106078
>emb|BX004881.17| Zebrafish DNA sequence from clone CH211-141M16 in linkage group 13, complete sequence Length = 189908 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 gctttgccagctgcaattaa 179 |||||||||||||||||||| Sbjct: 70889 gctttgccagctgcaattaa 70870
>emb|AL512640.9| Human DNA sequence from clone RP11-219K22 on chromosome 10, complete sequence Length = 96322 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 ccaaaaggaaaattacaagg 74 |||||||||||||||||||| Sbjct: 47875 ccaaaaggaaaattacaagg 47894
>emb|CR382124.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome D of strain NRRL Y-1140 of Kluyveromyces lactis Length = 1715506 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 atagaattctgtattttcca 124 |||||||||||||||||||| Sbjct: 259219 atagaattctgtattttcca 259200
>gb|AC084700.5| Homo sapiens chromosome 15, clone CTD-2013H3, complete sequence Length = 75292 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 cttcaaaaaccagagagcag 199 |||||||||||||||||||| Sbjct: 28992 cttcaaaaaccagagagcag 28973
>gb|AC129928.3| Homo sapiens chromosome 8, clone RP11-1112C19, complete sequence Length = 141478 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 caaaaggaaaattacaaggt 75 |||||||||||||||||||| Sbjct: 73707 caaaaggaaaattacaaggt 73688
>gb|AC110588.4| Homo sapiens chromosome 15, clone CTD-2027G2, complete sequence Length = 138217 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 cttcaaaaaccagagagcag 199 |||||||||||||||||||| Sbjct: 100994 cttcaaaaaccagagagcag 100975
>gb|AC119414.51| Medicago truncatula clone mth2-23d7, complete sequence Length = 159149 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 ttccaaaaggaaaattacaa 72 |||||||||||||||||||| Sbjct: 139493 ttccaaaaggaaaattacaa 139512
>gb|AC140372.3| Mus musculus BAC clone RP23-185B17 from chromosome 3, complete sequence Length = 180084 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 attttccacacagagaacca 136 |||||||||||||||||||| Sbjct: 109539 attttccacacagagaacca 109558
>gb|AC158620.6| Mus musculus 10 BAC RP23-288C18 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 179342 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 458 tctctctgataggatagaatgcag 481 |||||| ||||||||||||||||| Sbjct: 42177 tctctcggataggatagaatgcag 42154
>ref|XM_393361.2| PREDICTED: Apis mellifera similar to ENSANGP00000017608 (LOC409871), mRNA Length = 3771 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 ttctagatgttgaaagagct 387 |||||||||||||||||||| Sbjct: 1288 ttctagatgttgaaagagct 1269
>gb|AC073283.8| Homo sapiens BAC clone RP11-761B3 from 2, complete sequence Length = 181720 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 ttgaaagagctttctccagg 396 |||||||||||||||||||| Sbjct: 159020 ttgaaagagctttctccagg 159039
>gb|AC127464.3| Ornithorhynchus anatinus clone OA_Bb-383O11, complete sequence Length = 161148 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 cagagaaccatggaacccaa 146 |||||||||||||||||||| Sbjct: 27605 cagagaaccatggaacccaa 27624
>gb|AC145294.4| Mus musculus BAC clone RP23-88B16 from 7, complete sequence Length = 217265 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 181 ttcaaaaaccagagagcagcccca 204 |||| ||||||||||||||||||| Sbjct: 209698 ttcagaaaccagagagcagcccca 209721
>emb|CR556724.7| Zebrafish DNA sequence from clone DKEYP-34A8 in linkage group 13, complete sequence Length = 42660 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 gctttgccagctgcaattaa 179 |||||||||||||||||||| Sbjct: 11858 gctttgccagctgcaattaa 11877
>gb|U59214.1|ENU59214 Emericella nidulans MAP protein kinase MPKA (mpkA) gene, complete cds Length = 2738 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 tctcgctgttcaaaatctct 462 |||||||||||||||||||| Sbjct: 460 tctcgctgttcaaaatctct 479
>gb|AC113207.8| Mus musculus chromosome 10, clone RP23-323O18, complete sequence Length = 237187 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 413 ctcttggactgtttgctctt 432 |||||||||||||||||||| Sbjct: 17571 ctcttggactgtttgctctt 17590
>gb|AC149596.2| Mus musculus BAC clone RP24-424J20 from 7, complete sequence Length = 187362 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 181 ttcaaaaaccagagagcagcccca 204 |||| ||||||||||||||||||| Sbjct: 10043 ttcagaaaccagagagcagcccca 10020
>dbj|AP005362.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1574E2, complete sequence Length = 219049 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 caaaaggaaaattacaaggt 75 |||||||||||||||||||| Sbjct: 180193 caaaaggaaaattacaaggt 180212 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,478,309 Number of Sequences: 3902068 Number of extensions: 5478309 Number of successful extensions: 107423 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 107328 Number of HSP's gapped (non-prelim): 89 length of query: 605 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 582 effective length of database: 17,143,297,704 effective search space: 9977399263728 effective search space used: 9977399263728 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)