ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags16n01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK119628.1| Oryza sativa (japonica cultivar-group) cDNA clon... 178 1e-41
2dbj|AK100047.1| Oryza sativa (japonica cultivar-group) cDNA clon... 178 1e-41
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 133 7e-28
4dbj|AP003614.2| Oryza sativa (japonica cultivar-group) genomic D... 133 7e-28
5gb|AC121291.18| Mus musculus chromosome 5, clone RP23-170M15, co... 40 8.2
6ref|XM_453204.1| Kluyveromyces lactis NRRL Y-1140, KLLA0D03058g ... 40 8.2
7gb|AC118206.11| Mus musculus chromosome 3, clone RP24-159J16, co... 40 8.2
8gb|AC125132.4| Mus musculus BAC clone RP24-314B3 from chromosome... 40 8.2
9gb|AC129606.4| Mus musculus BAC clone RP23-128L6 from 8, complet... 40 8.2
10gb|AC116465.8| Mus musculus chromosome 10, clone RP23-64J3, comp... 40 8.2
11emb|BX004881.17| Zebrafish DNA sequence from clone CH211-141M16 ... 40 8.2
12emb|AL512640.9| Human DNA sequence from clone RP11-219K22 on chr... 40 8.2
13emb|CR382124.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 8.2
14gb|AC084700.5| Homo sapiens chromosome 15, clone CTD-2013H3, com... 40 8.2
15gb|AC129928.3| Homo sapiens chromosome 8, clone RP11-1112C19, co... 40 8.2
16gb|AC110588.4| Homo sapiens chromosome 15, clone CTD-2027G2, com... 40 8.2
17gb|AC119414.51| Medicago truncatula clone mth2-23d7, complete se... 40 8.2
18gb|AC140372.3| Mus musculus BAC clone RP23-185B17 from chromosom... 40 8.2
19gb|AC158620.6| Mus musculus 10 BAC RP23-288C18 (Roswell Park Can... 40 8.2
20ref|XM_393361.2| PREDICTED: Apis mellifera similar to ENSANGP000... 40 8.2
21gb|AC073283.8| Homo sapiens BAC clone RP11-761B3 from 2, complet... 40 8.2
22gb|AC127464.3| Ornithorhynchus anatinus clone OA_Bb-383O11, comp... 40 8.2
23gb|AC145294.4| Mus musculus BAC clone RP23-88B16 from 7, complet... 40 8.2
24emb|CR556724.7| Zebrafish DNA sequence from clone DKEYP-34A8 in ... 40 8.2
25gb|U59214.1|ENU59214 Emericella nidulans MAP protein kinase MPKA... 40 8.2
26gb|AC113207.8| Mus musculus chromosome 10, clone RP23-323O18, co... 40 8.2
27gb|AC149596.2| Mus musculus BAC clone RP24-424J20 from 7, comple... 40 8.2
28dbj|AP005362.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 8.2

>dbj|AK119628.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-128-A01, full
            insert sequence
          Length = 1545

 Score =  178 bits (90), Expect = 1e-41
 Identities = 206/242 (85%), Gaps = 2/242 (0%)
 Strand = Plus / Minus

                                                                        
Query: 364  ccctttctagatgttgaaagagctttctccaggtccgattgcctcaaggctcttggactg 423
            ||||||||||| ||||| | |||||||||||| |||||||||||||||| ||||||  | 
Sbjct: 1177 ccctttctagacgttgataaagctttctccagatccgattgcctcaagggtcttggttta 1118

                                                                        
Query: 424  tttgctcttgtcccatctttctcgctgttcaaaatctctctgataggatagaatgcagcc 483
            | |||| ||  ||||||||||||  ||||||| | ||| |||||||| |||||||| || 
Sbjct: 1117 tctgcttttcgcccatctttctcattgttcaacagctccctgatagggtagaatgctgct 1058

                                                                        
Query: 484  tgcttgcacagttctaggatgtctgacccagtaaagccctcacacaagctggcaatgtaa 543
            ||||||||||||||||| |||||||| |||||||| ||||| || |  | ||| ||||||
Sbjct: 1057 tgcttgcacagttctagaatgtctgatccagtaaatccctcgcatagaccggcgatgtaa 998

                                                                        
Query: 544  tcgtaatcaatgttagacttcgacgttttctcccttcagtataaccctgaagtatcttgc 603
            ||||||| |||||||| | ||||| ||||||||||||| || |||||| |||||||||||
Sbjct: 997  tcgtaattaatgttaggc-tcgacattttctcccttcaatacaaccct-aagtatcttgc 940

              
Query: 604  tt 605
            ||
Sbjct: 939  tt 938



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 43/47 (91%), Gaps = 1/47 (2%)
 Strand = Plus / Minus

                                                           
Query: 147  aacatcagtgcag-gctttgccagctgcaattaacttcaaaaaccag 192
            ||||||||||||  || ||||||||||| ||||||||||||||||||
Sbjct: 1526 aacatcagtgcaaagcattgccagctgccattaacttcaaaaaccag 1480



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>dbj|AK100047.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013154C19, full
            insert sequence
          Length = 1796

 Score =  178 bits (90), Expect = 1e-41
 Identities = 206/242 (85%), Gaps = 2/242 (0%)
 Strand = Plus / Minus

                                                                        
Query: 364  ccctttctagatgttgaaagagctttctccaggtccgattgcctcaaggctcttggactg 423
            ||||||||||| ||||| | |||||||||||| |||||||||||||||| ||||||  | 
Sbjct: 1179 ccctttctagacgttgataaagctttctccagatccgattgcctcaagggtcttggttta 1120

                                                                        
Query: 424  tttgctcttgtcccatctttctcgctgttcaaaatctctctgataggatagaatgcagcc 483
            | |||| ||  ||||||||||||  ||||||| | ||| |||||||| |||||||| || 
Sbjct: 1119 tctgcttttcgcccatctttctcattgttcaacagctccctgatagggtagaatgctgct 1060

                                                                        
Query: 484  tgcttgcacagttctaggatgtctgacccagtaaagccctcacacaagctggcaatgtaa 543
            ||||||||||||||||| |||||||| |||||||| ||||| || |  | ||| ||||||
Sbjct: 1059 tgcttgcacagttctagaatgtctgatccagtaaatccctcgcatagaccggcgatgtaa 1000

                                                                        
Query: 544  tcgtaatcaatgttagacttcgacgttttctcccttcagtataaccctgaagtatcttgc 603
            ||||||| |||||||| | ||||| ||||||||||||| || |||||| |||||||||||
Sbjct: 999  tcgtaattaatgttaggc-tcgacattttctcccttcaatacaaccct-aagtatcttgc 942

              
Query: 604  tt 605
            ||
Sbjct: 941  tt 940



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 43/47 (91%), Gaps = 1/47 (2%)
 Strand = Plus / Minus

                                                           
Query: 147  aacatcagtgcag-gctttgccagctgcaattaacttcaaaaaccag 192
            ||||||||||||  || ||||||||||| ||||||||||||||||||
Sbjct: 1528 aacatcagtgcaaagcattgccagctgccattaacttcaaaaaccag 1482



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  133 bits (67), Expect = 7e-28
 Identities = 147/171 (85%), Gaps = 2/171 (1%)
 Strand = Plus / Minus

                                                                            
Query: 435      cccatctttctcgctgttcaaaatctctctgataggatagaatgcagcctgcttgcacag 494
                ||||||||||||  ||||||| | ||| |||||||| |||||||| || |||||||||||
Sbjct: 29819199 cccatctttctcattgttcaacagctccctgatagggtagaatgctgcttgcttgcacag 29819140

                                                                            
Query: 495      ttctaggatgtctgacccagtaaagccctcacacaagctggcaatgtaatcgtaatcaat 554
                |||||| |||||||| |||||||| ||||| || |  | ||| ||||||||||||| |||
Sbjct: 29819139 ttctagaatgtctgatccagtaaatccctcgcatagaccggcgatgtaatcgtaattaat 29819080

                                                                   
Query: 555      gttagacttcgacgttttctcccttcagtataaccctgaagtatcttgctt 605
                ||||| | ||||| ||||||||||||| || |||||| |||||||||||||
Sbjct: 29819079 gttaggc-tcgacattttctcccttcaatacaaccct-aagtatcttgctt 29819031



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                        
Query: 364      ccctttctagatgttgaaagagctttctccaggtccgattgcctcaaggctcttgg 419
                ||||||||||| ||||| | |||||||||||| |||||||||||||||| ||||||
Sbjct: 29819592 ccctttctagacgttgataaagctttctccagatccgattgcctcaagggtcttgg 29819537



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 43/47 (91%), Gaps = 1/47 (2%)
 Strand = Plus / Minus

                                                               
Query: 147      aacatcagtgcag-gctttgccagctgcaattaacttcaaaaaccag 192
                ||||||||||||  || ||||||||||| ||||||||||||||||||
Sbjct: 29819941 aacatcagtgcaaagcattgccagctgccattaacttcaaaaaccag 29819895



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>dbj|AP003614.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0481E08
          Length = 171965

 Score =  133 bits (67), Expect = 7e-28
 Identities = 147/171 (85%), Gaps = 2/171 (1%)
 Strand = Plus / Minus

                                                                         
Query: 435   cccatctttctcgctgttcaaaatctctctgataggatagaatgcagcctgcttgcacag 494
             ||||||||||||  ||||||| | ||| |||||||| |||||||| || |||||||||||
Sbjct: 14712 cccatctttctcattgttcaacagctccctgatagggtagaatgctgcttgcttgcacag 14653

                                                                         
Query: 495   ttctaggatgtctgacccagtaaagccctcacacaagctggcaatgtaatcgtaatcaat 554
             |||||| |||||||| |||||||| ||||| || |  | ||| ||||||||||||| |||
Sbjct: 14652 ttctagaatgtctgatccagtaaatccctcgcatagaccggcgatgtaatcgtaattaat 14593

                                                                
Query: 555   gttagacttcgacgttttctcccttcagtataaccctgaagtatcttgctt 605
             ||||| | ||||| ||||||||||||| || |||||| |||||||||||||
Sbjct: 14592 gttaggc-tcgacattttctcccttcaatacaaccct-aagtatcttgctt 14544



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                     
Query: 364   ccctttctagatgttgaaagagctttctccaggtccgattgcctcaaggctcttgg 419
             ||||||||||| ||||| | |||||||||||| |||||||||||||||| ||||||
Sbjct: 15105 ccctttctagacgttgataaagctttctccagatccgattgcctcaagggtcttgg 15050



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 43/47 (91%), Gaps = 1/47 (2%)
 Strand = Plus / Minus

                                                            
Query: 147   aacatcagtgcag-gctttgccagctgcaattaacttcaaaaaccag 192
             ||||||||||||  || ||||||||||| ||||||||||||||||||
Sbjct: 15454 aacatcagtgcaaagcattgccagctgccattaacttcaaaaaccag 15408



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>gb|AC121291.18| Mus musculus chromosome 5, clone RP23-170M15, complete sequence
          Length = 192717

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 426   tgctcttgtcccatctttct 445
             ||||||||||||||||||||
Sbjct: 70113 tgctcttgtcccatctttct 70132



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>ref|XM_453204.1| Kluyveromyces lactis NRRL Y-1140, KLLA0D03058g predicted mRNA
          Length = 4206

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 105  atagaattctgtattttcca 124
            ||||||||||||||||||||
Sbjct: 1787 atagaattctgtattttcca 1768



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>gb|AC118206.11| Mus musculus chromosome 3, clone RP24-159J16, complete sequence
          Length = 255036

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   attttccacacagagaacca 136
             ||||||||||||||||||||
Sbjct: 53695 attttccacacagagaacca 53714



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>gb|AC125132.4| Mus musculus BAC clone RP24-314B3 from chromosome 8, complete sequence
          Length = 190472

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 452    tcaaaatctctctgatagga 471
              ||||||||||||||||||||
Sbjct: 130250 tcaaaatctctctgatagga 130231



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>gb|AC129606.4| Mus musculus BAC clone RP23-128L6 from 8, complete sequence
          Length = 235915

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 525    acacaagctggcaatgtaat 544
              ||||||||||||||||||||
Sbjct: 212788 acacaagctggcaatgtaat 212769



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>gb|AC116465.8| Mus musculus chromosome 10, clone RP23-64J3, complete sequence
          Length = 237801

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 413    ctcttggactgtttgctctt 432
              ||||||||||||||||||||
Sbjct: 106059 ctcttggactgtttgctctt 106078



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>emb|BX004881.17| Zebrafish DNA sequence from clone CH211-141M16 in linkage group 13,
             complete sequence
          Length = 189908

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 160   gctttgccagctgcaattaa 179
             ||||||||||||||||||||
Sbjct: 70889 gctttgccagctgcaattaa 70870



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>emb|AL512640.9| Human DNA sequence from clone RP11-219K22 on chromosome 10, complete
             sequence
          Length = 96322

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    ccaaaaggaaaattacaagg 74
             ||||||||||||||||||||
Sbjct: 47875 ccaaaaggaaaattacaagg 47894



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>emb|CR382124.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome D of strain NRRL
              Y-1140 of Kluyveromyces lactis
          Length = 1715506

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 105    atagaattctgtattttcca 124
              ||||||||||||||||||||
Sbjct: 259219 atagaattctgtattttcca 259200



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>gb|AC084700.5| Homo sapiens chromosome 15, clone CTD-2013H3, complete sequence
          Length = 75292

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 180   cttcaaaaaccagagagcag 199
             ||||||||||||||||||||
Sbjct: 28992 cttcaaaaaccagagagcag 28973



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>gb|AC129928.3| Homo sapiens chromosome 8, clone RP11-1112C19, complete sequence
          Length = 141478

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    caaaaggaaaattacaaggt 75
             ||||||||||||||||||||
Sbjct: 73707 caaaaggaaaattacaaggt 73688



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>gb|AC110588.4| Homo sapiens chromosome 15, clone CTD-2027G2, complete sequence
          Length = 138217

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 180    cttcaaaaaccagagagcag 199
              ||||||||||||||||||||
Sbjct: 100994 cttcaaaaaccagagagcag 100975



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>gb|AC119414.51| Medicago truncatula clone mth2-23d7, complete sequence
          Length = 159149

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 53     ttccaaaaggaaaattacaa 72
              ||||||||||||||||||||
Sbjct: 139493 ttccaaaaggaaaattacaa 139512



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>gb|AC140372.3| Mus musculus BAC clone RP23-185B17 from chromosome 3, complete sequence
          Length = 180084

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 117    attttccacacagagaacca 136
              ||||||||||||||||||||
Sbjct: 109539 attttccacacagagaacca 109558



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>gb|AC158620.6| Mus musculus 10 BAC RP23-288C18 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 179342

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 458   tctctctgataggatagaatgcag 481
             |||||| |||||||||||||||||
Sbjct: 42177 tctctcggataggatagaatgcag 42154



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>ref|XM_393361.2| PREDICTED: Apis mellifera similar to ENSANGP00000017608 (LOC409871),
            mRNA
          Length = 3771

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 368  ttctagatgttgaaagagct 387
            ||||||||||||||||||||
Sbjct: 1288 ttctagatgttgaaagagct 1269



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>gb|AC073283.8| Homo sapiens BAC clone RP11-761B3 from 2, complete sequence
          Length = 181720

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 377    ttgaaagagctttctccagg 396
              ||||||||||||||||||||
Sbjct: 159020 ttgaaagagctttctccagg 159039



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>gb|AC127464.3| Ornithorhynchus anatinus clone OA_Bb-383O11, complete sequence
          Length = 161148

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   cagagaaccatggaacccaa 146
             ||||||||||||||||||||
Sbjct: 27605 cagagaaccatggaacccaa 27624



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>gb|AC145294.4| Mus musculus BAC clone RP23-88B16 from 7, complete sequence
          Length = 217265

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 181    ttcaaaaaccagagagcagcccca 204
              |||| |||||||||||||||||||
Sbjct: 209698 ttcagaaaccagagagcagcccca 209721



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>emb|CR556724.7| Zebrafish DNA sequence from clone DKEYP-34A8 in linkage group 13,
             complete sequence
          Length = 42660

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 160   gctttgccagctgcaattaa 179
             ||||||||||||||||||||
Sbjct: 11858 gctttgccagctgcaattaa 11877



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>gb|U59214.1|ENU59214 Emericella nidulans MAP protein kinase MPKA (mpkA) gene, complete
           cds
          Length = 2738

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 443 tctcgctgttcaaaatctct 462
           ||||||||||||||||||||
Sbjct: 460 tctcgctgttcaaaatctct 479



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>gb|AC113207.8| Mus musculus chromosome 10, clone RP23-323O18, complete sequence
          Length = 237187

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 413   ctcttggactgtttgctctt 432
             ||||||||||||||||||||
Sbjct: 17571 ctcttggactgtttgctctt 17590



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>gb|AC149596.2| Mus musculus BAC clone RP24-424J20 from 7, complete sequence
          Length = 187362

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 181   ttcaaaaaccagagagcagcccca 204
             |||| |||||||||||||||||||
Sbjct: 10043 ttcagaaaccagagagcagcccca 10020



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>dbj|AP005362.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1574E2, complete
              sequence
          Length = 219049

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 56     caaaaggaaaattacaaggt 75
              ||||||||||||||||||||
Sbjct: 180193 caaaaggaaaattacaaggt 180212


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,478,309
Number of Sequences: 3902068
Number of extensions: 5478309
Number of successful extensions: 107423
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107328
Number of HSP's gapped (non-prelim): 89
length of query: 605
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 582
effective length of database: 17,143,297,704
effective search space: 9977399263728
effective search space used: 9977399263728
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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