ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags17c01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RL21_ARATH (Q43291) 60S ribosomal protein L21 36 0.024

>RL21_ARATH (Q43291) 60S ribosomal protein L21|
          Length = 164

 Score = 36.2 bits (82), Expect = 0.024
 Identities = 15/16 (93%), Positives = 15/16 (93%)
 Frame = -3

Query: 190 VTPIPYDVVNDLXGGY 143
           VTPIPYDVVNDL GGY
Sbjct: 149 VTPIPYDVVNDLKGGY 164


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,926,024
Number of Sequences: 219361
Number of extensions: 176521
Number of successful extensions: 205
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 80,573,946
effective HSP length: 39
effective length of database: 72,018,867
effective search space used: 1728452808
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top