ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags17c01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 78 1e-11
2gb|AC137930.3| Oryza sativa (japonica cultivar-group) chromosome... 78 1e-11
3gb|AC137697.2| Genomic sequence for Oryza sativa, Nipponbare str... 78 1e-11
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 78 1e-11
5dbj|AK120267.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 1e-11
6ref|NM_196917.1| Oryza sativa (japonica cultivar-group) 60S ribo... 68 1e-08
7gb|AC022457.8| Oryza sativa chromosome 10 BAC OSJNBa0006L06 geno... 68 1e-08
8dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 68 1e-08
9gb|AF093630.1|AF093630 Oryza sativa 60S ribosomal protein L21 (R... 68 1e-08
10gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 68 1e-08
11gb|BT016206.1| Zea mays clone Contig39 mRNA sequence 66 4e-08
12gb|AY105020.1| Zea mays PCO098402 mRNA sequence 66 4e-08
13gb|AY107603.1| Zea mays PCO098394 mRNA sequence 62 7e-07
14ref|NM_104579.3| Arabidopsis thaliana structural constituent of ... 58 1e-05
15ref|NM_104563.3| Arabidopsis thaliana structural constituent of ... 58 1e-05
16gb|AC079733.1| Arabidopsis thaliana chromosome 1 BAC T8L23 genom... 58 1e-05
17gb|AY091167.1| Arabidopsis thaliana putative 60S ribosomal prote... 58 1e-05
18gb|AY050840.1| Arabidopsis thaliana putative 60S ribosomal prote... 58 1e-05
19emb|BX814226.1|CNS0AC0R Arabidopsis thaliana Full-length cDNA Co... 58 1e-05
20emb|BX841874.1|CNS09Y44 Arabidopsis thaliana Full-length cDNA Co... 58 1e-05
21gb|AC079732.4|AC079732 Arabidopsis thaliana chromosome 1 BAC F12... 58 1e-05
22gb|BT004794.1| Arabidopsis thaliana At1g57860 gene, complete cds 58 1e-05
23gb|AY086851.1| Arabidopsis thaliana clone 28545 mRNA, complete s... 58 1e-05
24gb|AF457939.1| Zea mays clone cho1c.pk003.g2, mRNA sequence 48 0.010
25dbj|AP004496.1| Lotus japonicus genomic DNA, chromosome 1, clone... 44 0.15
26emb|CR376848.7| Zebrafish DNA sequence from clone CH211-197K23 i... 40 2.4
27gb|AC147387.2| Pan troglodytes BAC clone RP43-143N10 from 7, com... 38 9.5
28gb|AC008038.1|AC008038 Homo sapiens clone RP11-371A22 from 7q31,... 38 9.5
29emb|AL929134.20| Zebrafish DNA sequence from clone CH211-11I22 i... 38 9.5
30emb|BX664720.7| Zebrafish DNA sequence from clone DKEYP-4H4 in l... 38 9.5
31emb|AJ718457.1| Nicotiana tabacum cDNA-AFLP-fragment BSTC1-11-43... 38 9.5 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 43/45 (95%)
 Strand = Plus / Minus

                                                            
Query: 140     ctagtaaccaccctngagatcattgaccacatcatanggaatggg 184
               |||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 2248334 ctagtaaccacccttgagatcattgaccacatcatacggaatggg 2248290
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>gb|AC137930.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0030C11,
              complete sequence
          Length = 156647

 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 43/45 (95%)
 Strand = Plus / Minus

                                                           
Query: 140    ctagtaaccaccctngagatcattgaccacatcatanggaatggg 184
              |||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 138628 ctagtaaccacccttgagatcattgaccacatcatacggaatggg 138584
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>gb|AC137697.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0081A17, from chromosome 3, complete sequence
          Length = 134821

 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 43/45 (95%)
 Strand = Plus / Plus

                                                          
Query: 140   ctagtaaccaccctngagatcattgaccacatcatanggaatggg 184
             |||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 77722 ctagtaaccacccttgagatcattgaccacatcatacggaatggg 77766
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 43/45 (95%)
 Strand = Plus / Minus

                                                            
Query: 140     ctagtaaccaccctngagatcattgaccacatcatanggaatggg 184
               |||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 2248346 ctagtaaccacccttgagatcattgaccacatcatacggaatggg 2248302
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>dbj|AK120267.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013047I10, full
            insert sequence
          Length = 2007

 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 43/45 (95%)
 Strand = Plus / Minus

                                                         
Query: 140  ctagtaaccaccctngagatcattgaccacatcatanggaatggg 184
            |||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 1636 ctagtaaccacccttgagatcattgaccacatcatacggaatggg 1592
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>ref|NM_196917.1| Oryza sativa (japonica cultivar-group) 60S ribosomal protein L21
           (OSJNBa0006L06.3), mRNA
          Length = 783

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                               
Query: 139 cctagtaaccaccctngagatcattgaccacatcatanggaatgggagtgac 190
           ||||||||||||||| |||||||||||||||||| || || ||||| |||||
Sbjct: 573 cctagtaaccacccttgagatcattgaccacatcgtacgggatgggggtgac 522
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>gb|AC022457.8| Oryza sativa chromosome 10 BAC OSJNBa0006L06 genomic sequence, complete
             sequence
          Length = 162339

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                 
Query: 139   cctagtaaccaccctngagatcattgaccacatcatanggaatgggagtgac 190
             ||||||||||||||| |||||||||||||||||| || || ||||| |||||
Sbjct: 14081 cctagtaaccacccttgagatcattgaccacatcgtacgggatgggggtgac 14132
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                    
Query: 139      cctagtaaccaccctngagatcattgaccacatcatanggaatgggagtgac 190
                ||||||||||||||| |||||||||||||||||| || || ||||| |||||
Sbjct: 16669564 cctagtaaccacccttgagatcattgaccacatcgtacgggatgggggtgac 16669615
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>gb|AF093630.1|AF093630 Oryza sativa 60S ribosomal protein L21 (RPL21) mRNA, complete cds
          Length = 753

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                               
Query: 139 cctagtaaccaccctngagatcattgaccacatcatanggaatgggagtgac 190
           ||||||||||||||| |||||||||||||||||| || || ||||| |||||
Sbjct: 512 cctagtaaccacccttgagatcattgaccacatcgtacgggatgggggtgac 461
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                    
Query: 139      cctagtaaccaccctngagatcattgaccacatcatanggaatgggagtgac 190
                ||||||||||||||| |||||||||||||||||| || || ||||| |||||
Sbjct: 16678604 cctagtaaccacccttgagatcattgaccacatcgtacgggatgggggtgac 16678655
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>gb|BT016206.1| Zea mays clone Contig39 mRNA sequence
          Length = 748

 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                              
Query: 140 ctagtaaccaccctngagatcattgaccacatcatanggaatgggagtgac 190
           ||||||||| |||| |||||| |||||||||||||| ||||| ||||||||
Sbjct: 558 ctagtaaccgcccttgagatcgttgaccacatcataaggaataggagtgac 508
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>gb|AY105020.1| Zea mays PCO098402 mRNA sequence
          Length = 784

 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                              
Query: 140 ctagtaaccaccctngagatcattgaccacatcatanggaatgggagtgac 190
           ||||||||| |||| |||||| |||||||||||||| ||||| ||||||||
Sbjct: 594 ctagtaaccgcccttgagatcgttgaccacatcataaggaataggagtgac 544
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>gb|AY107603.1| Zea mays PCO098394 mRNA sequence
          Length = 965

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                
Query: 140 ctagtaaccaccctngagatcattgaccacatcatanggaatgggagtgacgg 192
           ||||||||| |||| ||||||||| ||||||||||| ||||| ||||| ||||
Sbjct: 612 ctagtaaccccccttgagatcatttaccacatcatagggaataggagtaacgg 560
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>ref|NM_104579.3| Arabidopsis thaliana structural constituent of ribosome AT1G57860
           mRNA, complete cds
          Length = 669

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                          
Query: 144 taaccaccctngagatcattgaccacatcatanggaatgggagtgac 190
           |||||||||| |||||| ||||| ||||| || ||||||||||||||
Sbjct: 529 taaccacccttgagatcgttgacaacatcgtaaggaatgggagtgac 483
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>ref|NM_104563.3| Arabidopsis thaliana structural constituent of ribosome AT1G57660
           mRNA, complete cds
          Length = 715

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                          
Query: 144 taaccaccctngagatcattgaccacatcatanggaatgggagtgac 190
           |||||||||| |||||| ||||| ||||| || ||||||||||||||
Sbjct: 538 taaccacccttgagatcgttgacaacatcgtaaggaatgggagtgac 492
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>gb|AC079733.1| Arabidopsis thaliana chromosome 1 BAC T8L23 genomic sequence, complete
             sequence
          Length = 90448

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                            
Query: 144   taaccaccctngagatcattgaccacatcatanggaatgggagtgac 190
             |||||||||| |||||| ||||| ||||| || ||||||||||||||
Sbjct: 47003 taaccacccttgagatcgttgacaacatcgtaaggaatgggagtgac 46957
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>gb|AY091167.1| Arabidopsis thaliana putative 60S ribosomal protein L21 (At1g57660)
           mRNA, complete cds
          Length = 526

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                          
Query: 144 taaccaccctngagatcattgaccacatcatanggaatgggagtgac 190
           |||||||||| |||||| ||||| ||||| || ||||||||||||||
Sbjct: 491 taaccacccttgagatcgttgacaacatcgtaaggaatgggagtgac 445
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>gb|AY050840.1| Arabidopsis thaliana putative 60S ribosomal protein L21 (At1g57660)
           mRNA, complete cds
          Length = 681

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                          
Query: 144 taaccaccctngagatcattgaccacatcatanggaatgggagtgac 190
           |||||||||| |||||| ||||| ||||| || ||||||||||||||
Sbjct: 538 taaccacccttgagatcgttgacaacatcgtaaggaatgggagtgac 492
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>emb|BX814226.1|CNS0AC0R Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB62ZA08 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 674

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                          
Query: 144 taaccaccctngagatcattgaccacatcatanggaatgggagtgac 190
           |||||||||| |||||| ||||| ||||| || ||||||||||||||
Sbjct: 497 taaccacccttgagatcgttgacaacatcgtaaggaatgggagtgac 451
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>emb|BX841874.1|CNS09Y44 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH60ZG03 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 658

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                          
Query: 144 taaccaccctngagatcattgaccacatcatanggaatgggagtgac 190
           |||||||||| |||||| ||||| ||||| || ||||||||||||||
Sbjct: 533 taaccacccttgagatcgttgacaacatcgtaaggaatgggagtgac 487
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>gb|AC079732.4|AC079732 Arabidopsis thaliana chromosome 1 BAC F12K22 genomic sequence,
            complete sequence
          Length = 43985

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                           
Query: 144  taaccaccctngagatcattgaccacatcatanggaatgggagtgac 190
            |||||||||| |||||| ||||| ||||| || ||||||||||||||
Sbjct: 6323 taaccacccttgagatcgttgacaacatcgtaaggaatgggagtgac 6277
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>gb|BT004794.1| Arabidopsis thaliana At1g57860 gene, complete cds
          Length = 495

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                          
Query: 144 taaccaccctngagatcattgaccacatcatanggaatgggagtgac 190
           |||||||||| |||||| ||||| ||||| || ||||||||||||||
Sbjct: 491 taaccacccttgagatcgttgacaacatcgtaaggaatgggagtgac 445
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>gb|AY086851.1| Arabidopsis thaliana clone 28545 mRNA, complete sequence
          Length = 627

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                          
Query: 144 taaccaccctngagatcattgaccacatcatanggaatgggagtgac 190
           |||||||||| |||||| ||||| ||||| || ||||||||||||||
Sbjct: 535 taaccacccttgagatcgttgacaacatcgtaaggaatgggagtgac 489
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>gb|AF457939.1| Zea mays clone cho1c.pk003.g2, mRNA sequence
          Length = 526

 Score = 48.1 bits (24), Expect = 0.010
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 150 ccctngagatcattgaccacatcatanggaatgg 183
           |||| ||||||||||||||||||||| || ||||
Sbjct: 525 cccttgagatcattgaccacatcatatgggatgg 492
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>dbj|AP004496.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT11C13, TM0029a,
             complete sequence
          Length = 53909

 Score = 44.1 bits (22), Expect = 0.15
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                 
Query: 139   cctagtaaccaccctngagatcattgaccacatcatanggaatgggagtgac 190
             ||||||| || || | ||| ||||| ||||||||||| ||||| ||||||||
Sbjct: 15872 cctagtagccccctttgaggtcattaaccacatcatatggaataggagtgac 15821
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>emb|CR376848.7| Zebrafish DNA sequence from clone CH211-197K23 in linkage group 24,
              complete sequence
          Length = 218909

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 134    aacaccctagtaaccaccct 153
              ||||||||||||||||||||
Sbjct: 182905 aacaccctagtaaccaccct 182924
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>gb|AC147387.2| Pan troglodytes BAC clone RP43-143N10 from 7, complete sequence
          Length = 173662

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 72     ggagcaaatcctactcata 90
              |||||||||||||||||||
Sbjct: 145027 ggagcaaatcctactcata 145045
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>gb|AC008038.1|AC008038 Homo sapiens clone RP11-371A22 from 7q31, complete sequence
          Length = 202945

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 72     ggagcaaatcctactcata 90
              |||||||||||||||||||
Sbjct: 104870 ggagcaaatcctactcata 104888
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>emb|AL929134.20| Zebrafish DNA sequence from clone CH211-11I22 in linkage group 25,
             complete sequence
          Length = 162177

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 133   aaacaccctagtaaccacc 151
             |||||||||||||||||||
Sbjct: 19287 aaacaccctagtaaccacc 19305
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>emb|BX664720.7| Zebrafish DNA sequence from clone DKEYP-4H4 in linkage group 22,
             complete sequence
          Length = 121320

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 133   aaacaccctagtaaccacc 151
             |||||||||||||||||||
Sbjct: 83029 aaacaccctagtaaccacc 83047
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>emb|AJ718457.1| Nicotiana tabacum cDNA-AFLP-fragment BSTC1-11-430, cultivar Bright
           Yellow 2
          Length = 384

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 24/26 (92%)
 Strand = Plus / Minus

                                     
Query: 162 ttgaccacatcatanggaatgggagt 187
           |||||||||||||| || ||||||||
Sbjct: 197 ttgaccacatcatatggtatgggagt 172


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 386,180
Number of Sequences: 3902068
Number of extensions: 386180
Number of successful extensions: 23658
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23589
Number of HSP's gapped (non-prelim): 69
length of query: 192
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 170
effective length of database: 17,147,199,772
effective search space: 2915023961240
effective search space used: 2915023961240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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