ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags16m23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GLTP_HUMAN (Q9NZD2) Glycolipid transfer protein (GLTP) 54 3e-07
2GLTP_MOUSE (Q9JL62) Glycolipid transfer protein (GLTP) 53 6e-07
3GLTP_PIG (P68266) Glycolipid transfer protein (GLTP) 52 9e-07
4GLTP_BOVIN (P68265) Glycolipid transfer protein (GLTP) 52 9e-07

>GLTP_HUMAN (Q9NZD2) Glycolipid transfer protein (GLTP)|
          Length = 208

 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 7/108 (6%)
 Frame = -2

Query: 575 YSSDPAKYEHLYTMVQEXVEKKXAKGSS-SCTNVLLWLTRAMDFLVELFRNMLD------ 417
           Y ++PAK+  L  +++   E   A+      T  L+WL R + F+    +++ D      
Sbjct: 59  YDTNPAKFRTLQNILEVEKEMYGAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDEN 118

Query: 416 HPDWTMSQACTDSYXKTLKKWHGWLASSSFTVAMKLAPNKDKFMXVIS 273
           HP+     A T +Y   LKK+HGW+    F  A+  AP K  F+  +S
Sbjct: 119 HPNLIRVNA-TKAYEMALKKYHGWIVQKIFQAALYAAPYKSDFLKALS 165



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>GLTP_MOUSE (Q9JL62) Glycolipid transfer protein (GLTP)|
          Length = 208

 Score = 53.1 bits (126), Expect = 6e-07
 Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 7/108 (6%)
 Frame = -2

Query: 575 YSSDPAKYEHLYTMVQEXVEKKXAKGSS-SCTNVLLWLTRAMDFLVELFRNMLD------ 417
           Y +DPAK++ L  +++       A+      T  LLWL R + F+    +++ D      
Sbjct: 59  YDTDPAKFKTLQNILEVEKGMYGAEWPKVGATLALLWLKRGLRFIQVFLQSICDGERDEN 118

Query: 416 HPDWTMSQACTDSYXKTLKKWHGWLASSSFTVAMKLAPNKDKFMXVIS 273
           HP+     A   +Y   LKK+HGWL    F  A+  AP K  F+  +S
Sbjct: 119 HPNLIRVNA-NKAYEMALKKYHGWLVQKIFKAALYAAPYKSDFLKALS 165



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>GLTP_PIG (P68266) Glycolipid transfer protein (GLTP)|
          Length = 208

 Score = 52.4 bits (124), Expect = 9e-07
 Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 7/108 (6%)
 Frame = -2

Query: 575 YSSDPAKYEHLYTMVQEXVEKKXAKGSS-SCTNVLLWLTRAMDFLVELFRNMLD------ 417
           Y ++P K+  L  +++   E   A+      T  L+WL R + F+    +++ D      
Sbjct: 59  YDTNPTKFRTLQNILEVEKEMYGAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDEN 118

Query: 416 HPDWTMSQACTDSYXKTLKKWHGWLASSSFTVAMKLAPNKDKFMXVIS 273
           HP+     A T +Y   LKK+HGW+    F  A+  AP K  F+  +S
Sbjct: 119 HPNLIRVNA-TKAYEMALKKYHGWIVQKIFQAALYAAPYKSDFLKALS 165



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>GLTP_BOVIN (P68265) Glycolipid transfer protein (GLTP)|
          Length = 208

 Score = 52.4 bits (124), Expect = 9e-07
 Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 7/108 (6%)
 Frame = -2

Query: 575 YSSDPAKYEHLYTMVQEXVEKKXAKGSS-SCTNVLLWLTRAMDFLVELFRNMLD------ 417
           Y ++P K+  L  +++   E   A+      T  L+WL R + F+    +++ D      
Sbjct: 59  YDTNPTKFRTLQNILEVEKEMYGAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDEN 118

Query: 416 HPDWTMSQACTDSYXKTLKKWHGWLASSSFTVAMKLAPNKDKFMXVIS 273
           HP+     A T +Y   LKK+HGW+    F  A+  AP K  F+  +S
Sbjct: 119 HPNLIRVNA-TKAYEMALKKYHGWIVQKIFQAALYAAPYKSDFLKALS 165


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,981,606
Number of Sequences: 219361
Number of extensions: 1337785
Number of successful extensions: 2814
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2814
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4929664480
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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