ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags16m23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_466814.1| Oryza sativa (japonica cultivar-group), mRNA 418 e-114
2dbj|AK061679.1| Oryza sativa (japonica cultivar-group) cDNA clon... 410 e-111
3gb|BT024039.1| Zea mays clone EL01N0429A01 mRNA sequence 305 9e-80
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 157 5e-35
5dbj|AP004053.3| Oryza sativa (japonica cultivar-group) genomic D... 157 5e-35
6dbj|AP006846.2| Oryza sativa (japonica cultivar-group) genomic D... 157 5e-35
7ref|NM_201859.1| Arabidopsis thaliana unknown protein AT2G33470 ... 54 5e-04
8ref|NM_128907.2| Arabidopsis thaliana unknown protein AT2G33470 ... 54 5e-04
9gb|AC002332.3| Arabidopsis thaliana chromosome 2 clone F4P9 map ... 54 5e-04
10gb|BT005674.1| Arabidopsis thaliana clone U50148 unknown protein... 54 5e-04
11gb|BT004207.1| Arabidopsis thaliana clone RAFL15-28-H11 (R50148)... 54 5e-04
12gb|AY085884.1| Arabidopsis thaliana clone 19302 mRNA, complete s... 54 5e-04
13ref|NM_187035.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.032
14gb|AC120404.25| Mus musculus chromosome 6, clone RP24-405O23, co... 42 2.0
15emb|AL356476.13| Human DNA sequence from clone RP11-655H13 on ch... 42 2.0
16dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
17dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
18dbj|AP004395.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
19gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.0
20emb|AL731749.3|CNS08C7Y Oryza sativa chromosome 12, . BAC OJ1312... 42 2.0
21emb|AL732644.3|CNS08C9J Oryza sativa chromosome 12, . BAC OSJNBa... 42 2.0
22ref|NM_113399.1| Arabidopsis thaliana DNA binding AT3G24870 mRNA... 40 7.9
23ref|NM_113400.3| Arabidopsis thaliana DNA binding AT3G24880 mRNA... 40 7.9
24gb|AC113302.13| Mus musculus chromosome 5, clone RP23-431M7, com... 40 7.9
25ref|XM_457317.1| Debaryomyces hansenii CBS767 hypothetical prote... 40 7.9
26gb|AC127027.13| Mus musculus chromosome 5, clone RP23-236G19, co... 40 7.9
27gb|AC118000.14| Mus musculus chromosome 3, clone RP23-33M9, comp... 40 7.9
28gb|AC132324.3| Mus musculus BAC clone RP24-270C24 from chromosom... 40 7.9
29gb|AC127281.3| Mus musculus BAC clone RP24-273C15 from chromosom... 40 7.9
30gb|AC124189.3| Mus musculus BAC clone RP23-254C8 from 5, complet... 40 7.9
31ref|XM_646239.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 40 7.9
32emb|CR730554.1|CNS0GQN3 Tetraodon nigroviridis full-length cDNA 40 7.9
33emb|CR727607.2|CNS0GOD9 Tetraodon nigroviridis full-length cDNA 40 7.9
34emb|CR703130.2|CNS0G5HI Tetraodon nigroviridis full-length cDNA 40 7.9
35emb|CR687850.2|CNS0FTP2 Tetraodon nigroviridis full-length cDNA 40 7.9
36emb|CR684165.2|CNS0FQUP Tetraodon nigroviridis full-length cDNA 40 7.9
37emb|CR661825.2|CNS0F9MV Tetraodon nigroviridis full-length cDNA 40 7.9
38emb|CR657762.1|CNS0F6I0 Tetraodon nigroviridis full-length cDNA 40 7.9
39emb|CR642978.2|CNS0EV3C Tetraodon nigroviridis full-length cDNA 40 7.9
40gb|AC163499.2| Mus musculus chromosome 5, clone RP23-250F1, comp... 40 7.9
41emb|CR536604.6| Zebrafish DNA sequence from clone DKEY-57A22 in ... 40 7.9
42emb|CR543861.1| Acinetobacter sp. ADP1 complete genome 40 7.9
43emb|CR382134.1| Debaryomyces hansenii chromosome B of strain CBS... 40 7.9
44gb|AC008916.7| Homo sapiens chromosome 5 clone CTD-2271P9, compl... 40 7.9
45gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 40 7.9
46dbj|AP004880.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
47dbj|AB028609.2| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 7.9
48gb|AC147891.2| Xenopus tropicalis clone CH216-2E23, complete seq... 40 7.9
49gb|AC101850.8| Mus musculus chromosome 5, clone RP23-269D16, com... 40 7.9
50gb|U67077.1|XLU67077 Xenopus laevis zing finger protein XFDL141 ... 40 7.9 
>ref|XM_466814.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 978

 Score =  418 bits (211), Expect = e-114
 Identities = 367/421 (87%)
 Strand = Plus / Minus

                                                                       
Query: 152 tgcattaagaagccttcatgtnatcgagtccaacactggccaggaagtcatgattctcct 211
           ||||||||||||||||||  | ||| ||||||||||||||||| || ||||||||||| |
Sbjct: 754 tgcattaagaagccttcagatcatcaagtccaacactggccagaaaatcatgattctctt 695

                                                                       
Query: 212 tgagaaagggataaaaggtggtgcanaatttctcaatgtctgctttgatgtcacccgttc 271
           ||||||| || |||||||| ||||| |||||||| || || ||||| |||||||||||||
Sbjct: 694 tgagaaaagggtaaaaggtcgtgcagaatttctcgatatcagcttttatgtcacccgttc 635

                                                                       
Query: 272 cgctaattacctncataaatttatctttgttaggagcaagcttcatagcaaccgtaaaac 331
           | ||||| |||| ||||||||| ||| | ||||||||||||||||| || || |||||||
Sbjct: 634 cactaatgacctccataaatttctctctattaggagcaagcttcattgccactgtaaaac 575

                                                                       
Query: 332 tggagctggcgagccagccatgccatttcttcagagtttttgngtatgaatcagtacatg 391
           | || ||||| ||||| ||||||||||||||||||||||| |  |||||||||||||| |
Sbjct: 574 tagaactggcaagccaaccatgccatttcttcagagttttggtatatgaatcagtacaag 515

                                                                       
Query: 392 cttgactcatagtccagtctggatggtcaagcatattacggaacagttcaacaaggaagt 451
           |||||||||||||||||||| |||| |||||||  |||||||| | ||||||||||||||
Sbjct: 514 cttgactcatagtccagtcttgatgctcaagcaggttacggaataattcaacaaggaagt 455

                                                                       
Query: 452 ccatggccctcgtgagccatagaagtacattggtgcagcttgatgaaccttttgcggnct 511
           |||| |||||||||||||| |||||| |||| ||||||||||| ||||||||||| | ||
Sbjct: 454 ccatagccctcgtgagccacagaagtccatttgtgcagcttgacgaaccttttgcagtct 395

                                                                       
Query: 512 tcttttcaacttnttcttggaccatggtgtacaagtgctcatattttgctgggtctgaag 571
           | |||| ||| | ||| || |||||| ||||||| ||||||||||||| |||||||||||
Sbjct: 394 tgttttgaacctcttcctgaaccatgctgtacaattgctcatattttgatgggtctgaag 335

            
Query: 572 a 572
           |
Sbjct: 334 a 334
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>dbj|AK061679.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-H10, full
           insert sequence
          Length = 978

 Score =  410 bits (207), Expect = e-111
 Identities = 366/421 (86%)
 Strand = Plus / Minus

                                                                       
Query: 152 tgcattaagaagccttcatgtnatcgagtccaacactggccaggaagtcatgattctcct 211
           ||||||||||||||||||  | ||| ||||||||||||||||| || ||||||||||| |
Sbjct: 754 tgcattaagaagccttcagatcatcaagtccaacactggccagaaaatcatgattctctt 695

                                                                       
Query: 212 tgagaaagggataaaaggtggtgcanaatttctcaatgtctgctttgatgtcacccgttc 271
           ||||||| || |||||||| ||||| |||||||| || || ||||| |||||||||||||
Sbjct: 694 tgagaaaagggtaaaaggtcgtgcagaatttctcgatatcagcttttatgtcacccgttc 635

                                                                       
Query: 272 cgctaattacctncataaatttatctttgttaggagcaagcttcatagcaaccgtaaaac 331
           | ||||| |||| ||||||||| ||| | ||||||||||||||||| || || |||||||
Sbjct: 634 cactaatgacctccataaatttctctctattaggagcaagcttcattgccactgtaaaac 575

                                                                       
Query: 332 tggagctggcgagccagccatgccatttcttcagagtttttgngtatgaatcagtacatg 391
           | || ||||| ||||| ||||||||||||||||||||||| |  |||||||||||||| |
Sbjct: 574 tagaactggcaagccaaccatgccatttcttcagagttttggtatatgaatcagtacaag 515

                                                                       
Query: 392 cttgactcatagtccagtctggatggtcaagcatattacggaacagttcaacaaggaagt 451
           |||||||||||||||||||| |||| |||||||  |||||||| | ||||||||||||||
Sbjct: 514 cttgactcatagtccagtcttgatgctcaagcaggttacggaataattcaacaaggaagt 455

                                                                       
Query: 452 ccatggccctcgtgagccatagaagtacattggtgcagcttgatgaaccttttgcggnct 511
           |||| |||||||||||||| |||||| |||| ||||||||||| ||||||||||| | ||
Sbjct: 454 ccatagccctcgtgagccacagaagtccatttgtgcagcttgacgaaccttttgcagtct 395

                                                                       
Query: 512 tcttttcaacttnttcttggaccatggtgtacaagtgctcatattttgctgggtctgaag 571
           | |||| | | | ||| || |||||| ||||||| ||||||||||||| |||||||||||
Sbjct: 394 tgttttgagcctcttcctgaaccatgctgtacaattgctcatattttgatgggtctgaag 335

            
Query: 572 a 572
           |
Sbjct: 334 a 334
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>gb|BT024039.1| Zea mays clone EL01N0429A01 mRNA sequence
          Length = 807

 Score =  305 bits (154), Expect = 9e-80
 Identities = 352/420 (83%)
 Strand = Plus / Minus

                                                                       
Query: 160 gaagccttcatgtnatcgagtccaacactggccaggaagtcatgattctccttgagaaag 219
           ||||||||||| | ||| || ||||| || ||||| || || ||||| || |||||||| 
Sbjct: 559 gaagccttcatatcatcaagaccaacgctcgccagaaactcgtgattttctttgagaaaa 500

                                                                       
Query: 220 ggataaaaggtggtgcanaatttctcaatgtctgctttgatgtcacccgttccgctaatt 279
           ||| | ||||| ||||| ||||||||||| ||||| ||||| ||||| ||||| ||||| 
Sbjct: 499 ggagagaaggttgtgcaaaatttctcaatatctgcattgatatcaccagttccactaatg 440

                                                                       
Query: 280 acctncataaatttatctttgttaggagcaagcttcatagcaaccgtaaaactggagctg 339
           |||| ||| ||||||||| | |||||||  |||||||| || ||||||||||| || |||
Sbjct: 439 acctccatgaatttatctctattaggagagagcttcatggccaccgtaaaactagaactg 380

                                                                       
Query: 340 gcgagccagccatgccatttcttcagagtttttgngtatgaatcagtacatgcttgactc 399
           || |||||||||||  |||||||||| || || | |||||||||||| || |||||| ||
Sbjct: 379 gcaagccagccatgaaatttcttcagggtcttggtgtatgaatcagtgcaagcttgagtc 320

                                                                       
Query: 400 atagtccagtctggatggtcaagcatattacggaacagttcaacaaggaagtccatggcc 459
           || |||||||||||||| |||||||  ||||||||||  ||||||||||| |||||||||
Sbjct: 319 atggtccagtctggatgctcaagcaggttacggaacaactcaacaaggaaatccatggcc 260

                                                                       
Query: 460 ctcgtgagccatagaagtacattggtgcagcttgatgaaccttttgcggncttcttttca 519
           ||||||||||| |||||  |||| ||||||||||| |||||||| |||| ||| |||| |
Sbjct: 259 ctcgtgagccacagaagaccatttgtgcagcttgaggaacctttcgcggtcttgttttga 200

                                                                       
Query: 520 acttnttcttggaccatggtgtacaagtgctcatattttgctgggtctgaagagtacttg 579
           |||| ||| || |||||| ||||||||||  |||| |||| ||| |||||||| ||||||
Sbjct: 199 acttcttcctgaaccatgctgtacaagtgtccatactttgatggatctgaagaatacttg 140
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  157 bits (79), Expect = 5e-35
 Identities = 126/142 (88%)
 Strand = Plus / Minus

                                                                            
Query: 320      caaccgtaaaactggagctggcgagccagccatgccatttcttcagagtttttgngtatg 379
                |||| |||||||| || ||||| ||||| ||||||||||||||||||||||| |  ||||
Sbjct: 24801215 caactgtaaaactagaactggcaagccaaccatgccatttcttcagagttttggtatatg 24801156

                                                                            
Query: 380      aatcagtacatgcttgactcatagtccagtctggatggtcaagcatattacggaacagtt 439
                |||||||||| ||||||||||||||||||||| |||| |||||||  |||||||| | ||
Sbjct: 24801155 aatcagtacaagcttgactcatagtccagtcttgatgctcaagcaggttacggaataatt 24801096

                                      
Query: 440      caacaaggaagtccatggccct 461
                |||||||||||||||| |||||
Sbjct: 24801095 caacaaggaagtccatagccct 24801074



 Score =  121 bits (61), Expect = 3e-24
 Identities = 104/119 (87%)
 Strand = Plus / Minus

                                                                            
Query: 199      tcatgattctccttgagaaagggataaaaggtggtgcanaatttctcaatgtctgctttg 258
                ||||||||||| |||||||| || |||||||| ||||| |||||||| || || ||||| 
Sbjct: 24801750 tcatgattctctttgagaaaagggtaaaaggtcgtgcagaatttctcgatatcagctttt 24801691

                                                                           
Query: 259      atgtcacccgttccgctaattacctncataaatttatctttgttaggagcaagcttcat 317
                |||||||||||||| ||||| |||| ||||||||| ||| | |||||||||||||||||
Sbjct: 24801690 atgtcacccgttccactaatgacctccataaatttctctctattaggagcaagcttcat 24801632



 Score =  111 bits (56), Expect = 3e-21
 Identities = 99/114 (86%)
 Strand = Plus / Minus

                                                                            
Query: 459      cctcgtgagccatagaagtacattggtgcagcttgatgaaccttttgcggncttcttttc 518
                |||||||||||| |||||| |||| ||||||||||| ||||||||||| | ||| |||| 
Sbjct: 24800995 cctcgtgagccacagaagtccatttgtgcagcttgacgaaccttttgcagtcttgttttg 24800936

                                                                      
Query: 519      aacttnttcttggaccatggtgtacaagtgctcatattttgctgggtctgaaga 572
                ||| | ||| || |||||| ||||||| ||||||||||||| ||||||||||||
Sbjct: 24800935 aacctcttcctgaaccatgctgtacaattgctcatattttgatgggtctgaaga 24800882



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                         
Query: 152      tgcattaagaagccttcatgtnatcgagtccaacactggcc 192
                ||||||||||||||||||  | ||| |||||||||||||||
Sbjct: 24801886 tgcattaagaagccttcagatcatcaagtccaacactggcc 24801846



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 285      cataaatttatctttgttag 304
                ||||||||||||||||||||
Sbjct: 30753977 cataaatttatctttgttag 30753996
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>dbj|AP004053.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1234_B11
          Length = 128095

 Score =  157 bits (79), Expect = 5e-35
 Identities = 126/142 (88%)
 Strand = Plus / Minus

                                                                          
Query: 320    caaccgtaaaactggagctggcgagccagccatgccatttcttcagagtttttgngtatg 379
              |||| |||||||| || ||||| ||||| ||||||||||||||||||||||| |  ||||
Sbjct: 100863 caactgtaaaactagaactggcaagccaaccatgccatttcttcagagttttggtatatg 100804

                                                                          
Query: 380    aatcagtacatgcttgactcatagtccagtctggatggtcaagcatattacggaacagtt 439
              |||||||||| ||||||||||||||||||||| |||| |||||||  |||||||| | ||
Sbjct: 100803 aatcagtacaagcttgactcatagtccagtcttgatgctcaagcaggttacggaataatt 100744

                                    
Query: 440    caacaaggaagtccatggccct 461
              |||||||||||||||| |||||
Sbjct: 100743 caacaaggaagtccatagccct 100722



 Score =  121 bits (61), Expect = 3e-24
 Identities = 104/119 (87%)
 Strand = Plus / Minus

                                                                          
Query: 199    tcatgattctccttgagaaagggataaaaggtggtgcanaatttctcaatgtctgctttg 258
              ||||||||||| |||||||| || |||||||| ||||| |||||||| || || ||||| 
Sbjct: 101398 tcatgattctctttgagaaaagggtaaaaggtcgtgcagaatttctcgatatcagctttt 101339

                                                                         
Query: 259    atgtcacccgttccgctaattacctncataaatttatctttgttaggagcaagcttcat 317
              |||||||||||||| ||||| |||| ||||||||| ||| | |||||||||||||||||
Sbjct: 101338 atgtcacccgttccactaatgacctccataaatttctctctattaggagcaagcttcat 101280



 Score =  111 bits (56), Expect = 3e-21
 Identities = 99/114 (86%)
 Strand = Plus / Minus

                                                                          
Query: 459    cctcgtgagccatagaagtacattggtgcagcttgatgaaccttttgcggncttcttttc 518
              |||||||||||| |||||| |||| ||||||||||| ||||||||||| | ||| |||| 
Sbjct: 100643 cctcgtgagccacagaagtccatttgtgcagcttgacgaaccttttgcagtcttgttttg 100584

                                                                    
Query: 519    aacttnttcttggaccatggtgtacaagtgctcatattttgctgggtctgaaga 572
              ||| | ||| || |||||| ||||||| ||||||||||||| ||||||||||||
Sbjct: 100583 aacctcttcctgaaccatgctgtacaattgctcatattttgatgggtctgaaga 100530



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                       
Query: 152    tgcattaagaagccttcatgtnatcgagtccaacactggcc 192
              ||||||||||||||||||  | ||| |||||||||||||||
Sbjct: 101534 tgcattaagaagccttcagatcatcaagtccaacactggcc 101494
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>dbj|AP006846.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
            fosmid clone:OSJNOa283G08
          Length = 38265

 Score =  157 bits (79), Expect = 5e-35
 Identities = 126/142 (88%)
 Strand = Plus / Minus

                                                                        
Query: 320  caaccgtaaaactggagctggcgagccagccatgccatttcttcagagtttttgngtatg 379
            |||| |||||||| || ||||| ||||| ||||||||||||||||||||||| |  ||||
Sbjct: 4579 caactgtaaaactagaactggcaagccaaccatgccatttcttcagagttttggtatatg 4520

                                                                        
Query: 380  aatcagtacatgcttgactcatagtccagtctggatggtcaagcatattacggaacagtt 439
            |||||||||| ||||||||||||||||||||| |||| |||||||  |||||||| | ||
Sbjct: 4519 aatcagtacaagcttgactcatagtccagtcttgatgctcaagcaggttacggaataatt 4460

                                  
Query: 440  caacaaggaagtccatggccct 461
            |||||||||||||||| |||||
Sbjct: 4459 caacaaggaagtccatagccct 4438



 Score =  121 bits (61), Expect = 3e-24
 Identities = 104/119 (87%)
 Strand = Plus / Minus

                                                                        
Query: 199  tcatgattctccttgagaaagggataaaaggtggtgcanaatttctcaatgtctgctttg 258
            ||||||||||| |||||||| || |||||||| ||||| |||||||| || || ||||| 
Sbjct: 5114 tcatgattctctttgagaaaagggtaaaaggtcgtgcagaatttctcgatatcagctttt 5055

                                                                       
Query: 259  atgtcacccgttccgctaattacctncataaatttatctttgttaggagcaagcttcat 317
            |||||||||||||| ||||| |||| ||||||||| ||| | |||||||||||||||||
Sbjct: 5054 atgtcacccgttccactaatgacctccataaatttctctctattaggagcaagcttcat 4996



 Score =  111 bits (56), Expect = 3e-21
 Identities = 99/114 (86%)
 Strand = Plus / Minus

                                                                        
Query: 459  cctcgtgagccatagaagtacattggtgcagcttgatgaaccttttgcggncttcttttc 518
            |||||||||||| |||||| |||| ||||||||||| ||||||||||| | ||| |||| 
Sbjct: 4359 cctcgtgagccacagaagtccatttgtgcagcttgacgaaccttttgcagtcttgttttg 4300

                                                                  
Query: 519  aacttnttcttggaccatggtgtacaagtgctcatattttgctgggtctgaaga 572
            ||| | ||| || |||||| ||||||| ||||||||||||| ||||||||||||
Sbjct: 4299 aacctcttcctgaaccatgctgtacaattgctcatattttgatgggtctgaaga 4246



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 152  tgcattaagaagccttcatgtnatcgagtccaacactggcc 192
            ||||||||||||||||||  | ||| |||||||||||||||
Sbjct: 5250 tgcattaagaagccttcagatcatcaagtccaacactggcc 5210
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>ref|NM_201859.1| Arabidopsis thaliana unknown protein AT2G33470 transcript variant
           AT2G33470.2 mRNA, complete cds
          Length = 865

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                       
Query: 334 gagctggcgagccagccatgccatttcttcagagtttttgngtatgaatcagtacatgct 393
           |||||||||||||| || ||||||||||| || ||||||  |||||| |||| ||| |||
Sbjct: 504 gagctggcgagccatccgtgccatttcttgagtgttttttggtatgagtcagcacaagct 445

             
Query: 394 tg 395
           ||
Sbjct: 444 tg 443
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>ref|NM_128907.2| Arabidopsis thaliana unknown protein AT2G33470 transcript variant
           AT2G33470.1 mRNA, complete cds
          Length = 981

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                       
Query: 334 gagctggcgagccagccatgccatttcttcagagtttttgngtatgaatcagtacatgct 393
           |||||||||||||| || ||||||||||| || ||||||  |||||| |||| ||| |||
Sbjct: 620 gagctggcgagccatccgtgccatttcttgagtgttttttggtatgagtcagcacaagct 561

             
Query: 394 tg 395
           ||
Sbjct: 560 tg 559
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>gb|AC002332.3| Arabidopsis thaliana chromosome 2 clone F4P9 map ve015, complete
             sequence
          Length = 152593

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                         
Query: 334   gagctggcgagccagccatgccatttcttcagagtttttgngtatgaatcagtacatgct 393
             |||||||||||||| || ||||||||||| || ||||||  |||||| |||| ||| |||
Sbjct: 80824 gagctggcgagccatccgtgccatttcttgagtgttttttggtatgagtcagcacaagct 80883

               
Query: 394   tg 395
             ||
Sbjct: 80884 tg 80885
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>gb|BT005674.1| Arabidopsis thaliana clone U50148 unknown protein (At2g33470) mRNA,
           complete cds
          Length = 640

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                       
Query: 334 gagctggcgagccagccatgccatttcttcagagtttttgngtatgaatcagtacatgct 393
           |||||||||||||| || ||||||||||| || ||||||  |||||| |||| ||| |||
Sbjct: 431 gagctggcgagccatccgtgccatttcttgagtgttttttggtatgagtcagcacaagct 372

             
Query: 394 tg 395
           ||
Sbjct: 371 tg 370
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>gb|BT004207.1| Arabidopsis thaliana clone RAFL15-28-H11 (R50148) unknown protein
           (At2g33470) mRNA, complete cds
          Length = 893

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                       
Query: 334 gagctggcgagccagccatgccatttcttcagagtttttgngtatgaatcagtacatgct 393
           |||||||||||||| || ||||||||||| || ||||||  |||||| |||| ||| |||
Sbjct: 524 gagctggcgagccatccgtgccatttcttgagtgttttttggtatgagtcagcacaagct 465

             
Query: 394 tg 395
           ||
Sbjct: 464 tg 463
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>gb|AY085884.1| Arabidopsis thaliana clone 19302 mRNA, complete sequence
          Length = 945

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                       
Query: 334 gagctggcgagccagccatgccatttcttcagagtttttgngtatgaatcagtacatgct 393
           |||||||||||||| || ||||||||||| || ||||||  |||||| |||| ||| |||
Sbjct: 618 gagctggcgagccatccgtgccatttcttgagtgttttttggtatgagtcagcacaagct 559

             
Query: 394 tg 395
           ||
Sbjct: 558 tg 557
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>ref|NM_187035.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 609

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                       
Query: 304 ggagcaagcttcatagcaaccgtaaaactggagctggcgagccagccatgccatttcttc 363
           ||||||||||| || ||||||| ||| || || || || ||||| || ||||||||||| 
Sbjct: 461 ggagcaagctttatggcaaccgaaaagcttgaactcgccagccatccgtgccatttcttg 402

                   
Query: 364 agagtttt 371
           ||||||||
Sbjct: 401 agagtttt 394



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 426 attacggaacagttcaacaaggaagtccatggc 458
           |||| |||||||| |||| ||||||||||||||
Sbjct: 339 attatggaacagtgcaaccaggaagtccatggc 307
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>gb|AC120404.25| Mus musculus chromosome 6, clone RP24-405O23, complete sequence
          Length = 202146

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 534   catggtgtacaagtgctcata 554
             |||||||||||||||||||||
Sbjct: 98483 catggtgtacaagtgctcata 98463
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>emb|AL356476.13| Human DNA sequence from clone RP11-655H13 on chromosome 10 Contains a
              mitogen-activated protein kinase-activated protein kinase 5
              (MAPKAPK5) pseudogene and a novel gene, complete sequence
          Length = 184510

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 387    acatgcttgactcatagtcca 407
              |||||||||||||||||||||
Sbjct: 154862 acatgcttgactcatagtcca 154882
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 96       ataaaatttgagaaaatagcaagac 120
                |||||||||||||||| ||||||||
Sbjct: 14220331 ataaaatttgagaaaaaagcaagac 14220355
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 426      attacggaacagttcaacaaggaagtccatggc 458
                |||| |||||||| |||| ||||||||||||||
Sbjct: 15168600 attatggaacagtgcaaccaggaagtccatggc 15168568
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>dbj|AP004395.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0030H06
          Length = 147890

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 426   attacggaacagttcaacaaggaagtccatggc 458
             |||| |||||||| |||| ||||||||||||||
Sbjct: 35349 attatggaacagtgcaaccaggaagtccatggc 35317
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 96       ataaaatttgagaaaatagcaagac 120
                |||||||||||||||| ||||||||
Sbjct: 14174611 ataaaatttgagaaaaaagcaagac 14174635
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>emb|AL731749.3|CNS08C7Y Oryza sativa chromosome 12, . BAC OJ1312_H10 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 141067

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 96    ataaaatttgagaaaatagcaagac 120
             |||||||||||||||| ||||||||
Sbjct: 15949 ataaaatttgagaaaaaagcaagac 15973
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>emb|AL732644.3|CNS08C9J Oryza sativa chromosome 12, . BAC OSJNBa0016A01 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 150703

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 96     ataaaatttgagaaaatagcaagac 120
              |||||||||||||||| ||||||||
Sbjct: 146872 ataaaatttgagaaaaaagcaagac 146896
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>ref|NM_113399.1| Arabidopsis thaliana DNA binding AT3G24870 mRNA, complete cds
          Length = 5526

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 344  gccagccatgccatttcttc 363
            ||||||||||||||||||||
Sbjct: 1745 gccagccatgccatttcttc 1726
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>ref|NM_113400.3| Arabidopsis thaliana DNA binding AT3G24880 mRNA, complete cds
          Length = 6089

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 344  gccagccatgccatttcttc 363
            ||||||||||||||||||||
Sbjct: 1760 gccagccatgccatttcttc 1741
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>gb|AC113302.13| Mus musculus chromosome 5, clone RP23-431M7, complete sequence
          Length = 201427

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 394   tgactcatagtccagtctggatgg 417
             |||||||||||||||| |||||||
Sbjct: 51044 tgactcatagtccagtgtggatgg 51021
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>ref|XM_457317.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0B08305g)
           partial mRNA
          Length = 849

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 511 ttcttttcaacttnttcttggac 533
           ||||||||||||| |||||||||
Sbjct: 166 ttcttttcaacttgttcttggac 144
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>gb|AC127027.13| Mus musculus chromosome 5, clone RP23-236G19, complete sequence
          Length = 195654

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 468    ccatagaagtacattggtgc 487
              ||||||||||||||||||||
Sbjct: 120607 ccatagaagtacattggtgc 120588
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>gb|AC118000.14| Mus musculus chromosome 3, clone RP23-33M9, complete sequence
          Length = 167218

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 98    aaaatttgagaaaatagcaagact 121
             ||||||||||||| ||||||||||
Sbjct: 91456 aaaatttgagaaattagcaagact 91433
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>gb|AC132324.3| Mus musculus BAC clone RP24-270C24 from chromosome 13, complete sequence
          Length = 169258

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 95     aataaaatttgagaaaatag 114
              ||||||||||||||||||||
Sbjct: 150855 aataaaatttgagaaaatag 150836
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>gb|AC127281.3| Mus musculus BAC clone RP24-273C15 from chromosome 13, complete
             sequence
          Length = 154576

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    aataaaatttgagaaaatag 114
             ||||||||||||||||||||
Sbjct: 47453 aataaaatttgagaaaatag 47434
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>gb|AC124189.3| Mus musculus BAC clone RP23-254C8 from 5, complete sequence
          Length = 150507

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 394   tgactcatagtccagtctggatgg 417
             |||||||||||||||| |||||||
Sbjct: 15040 tgactcatagtccagtgtggatgg 15063
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>ref|XM_646239.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (170.t00017)
           partial mRNA
          Length = 696

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 288 aaatttatctttgttaggag 307
           ||||||||||||||||||||
Sbjct: 378 aaatttatctttgttaggag 397
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>emb|CR730554.1|CNS0GQN3 Tetraodon nigroviridis full-length cDNA
          Length = 1318

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 390 tgcttgactcatagtccagt 409
           ||||||||||||||||||||
Sbjct: 595 tgcttgactcatagtccagt 614
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>emb|CR727607.2|CNS0GOD9 Tetraodon nigroviridis full-length cDNA
          Length = 1331

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 390 tgcttgactcatagtccagt 409
           ||||||||||||||||||||
Sbjct: 605 tgcttgactcatagtccagt 624
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>emb|CR703130.2|CNS0G5HI Tetraodon nigroviridis full-length cDNA
          Length = 1008

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 390 tgcttgactcatagtccagt 409
           ||||||||||||||||||||
Sbjct: 527 tgcttgactcatagtccagt 546
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>emb|CR687850.2|CNS0FTP2 Tetraodon nigroviridis full-length cDNA
          Length = 1120

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 390 tgcttgactcatagtccagt 409
           ||||||||||||||||||||
Sbjct: 654 tgcttgactcatagtccagt 673
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>emb|CR684165.2|CNS0FQUP Tetraodon nigroviridis full-length cDNA
          Length = 953

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 390 tgcttgactcatagtccagt 409
           ||||||||||||||||||||
Sbjct: 225 tgcttgactcatagtccagt 244
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>emb|CR661825.2|CNS0F9MV Tetraodon nigroviridis full-length cDNA
          Length = 1041

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 390 tgcttgactcatagtccagt 409
           ||||||||||||||||||||
Sbjct: 314 tgcttgactcatagtccagt 333
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>emb|CR657762.1|CNS0F6I0 Tetraodon nigroviridis full-length cDNA
          Length = 1311

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 390 tgcttgactcatagtccagt 409
           ||||||||||||||||||||
Sbjct: 581 tgcttgactcatagtccagt 600
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>emb|CR642978.2|CNS0EV3C Tetraodon nigroviridis full-length cDNA
          Length = 1080

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 390 tgcttgactcatagtccagt 409
           ||||||||||||||||||||
Sbjct: 370 tgcttgactcatagtccagt 389
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>gb|AC163499.2| Mus musculus chromosome 5, clone RP23-250F1, complete sequence
          Length = 155609

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 96   ataaaatttgagaaaatagcaaga 119
            ||||||||||||||||||| ||||
Sbjct: 3767 ataaaatttgagaaaataggaaga 3744
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>emb|CR536604.6| Zebrafish DNA sequence from clone DKEY-57A22 in linkage group 9, complete
              sequence
          Length = 217381

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 413    gatggtcaagcatattacggaaca 436
              |||||||||||||||||| |||||
Sbjct: 157030 gatggtcaagcatattacagaaca 157053
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>emb|CR543861.1| Acinetobacter sp. ADP1 complete genome
          Length = 3598621

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 489     gcttgatgaaccttttgcgg 508
               ||||||||||||||||||||
Sbjct: 1483789 gcttgatgaaccttttgcgg 1483808
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>emb|CR382134.1| Debaryomyces hansenii chromosome B of strain CBS767 of Debaryomyces
              hansenii
          Length = 1349926

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 511    ttcttttcaacttnttcttggac 533
              ||||||||||||| |||||||||
Sbjct: 668991 ttcttttcaacttgttcttggac 668969
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>gb|AC008916.7| Homo sapiens chromosome 5 clone CTD-2271P9, complete sequence
          Length = 133862

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    aataaaatttgagaaaatag 114
             ||||||||||||||||||||
Sbjct: 32245 aataaaatttgagaaaatag 32226
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>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 482     tggtgcagcttgatgaacct 501
               ||||||||||||||||||||
Sbjct: 3543799 tggtgcagcttgatgaacct 3543780
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>dbj|AP004880.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0487D09
          Length = 161531

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 285   cataaatttatctttgttag 304
             ||||||||||||||||||||
Sbjct: 94124 cataaatttatctttgttag 94143
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>dbj|AB028609.2| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K7P8
          Length = 78529

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 344   gccagccatgccatttcttc 363
             ||||||||||||||||||||
Sbjct: 65045 gccagccatgccatttcttc 65064



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 344   gccagccatgccatttcttc 363
             ||||||||||||||||||||
Sbjct: 53786 gccagccatgccatttcttc 53805
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>gb|AC147891.2| Xenopus tropicalis clone CH216-2E23, complete sequence
          Length = 209003

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 290    atttatctttgttaggagca 309
              ||||||||||||||||||||
Sbjct: 166370 atttatctttgttaggagca 166389
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>gb|AC101850.8| Mus musculus chromosome 5, clone RP23-269D16, complete sequence
          Length = 184289

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 96    ataaaatttgagaaaatagcaaga 119
             ||||||||||||||||||| ||||
Sbjct: 95823 ataaaatttgagaaaataggaaga 95800
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>gb|U67077.1|XLU67077 Xenopus laevis zing finger protein XFDL141 gene, complete cds
          Length = 5163

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 178  agtccaacactggccaggaa 197
            ||||||||||||||||||||
Sbjct: 4847 agtccaacactggccaggaa 4828


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,560,280
Number of Sequences: 3902068
Number of extensions: 4560280
Number of successful extensions: 84056
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83803
Number of HSP's gapped (non-prelim): 253
length of query: 579
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 556
effective length of database: 17,143,297,704
effective search space: 9531673523424
effective search space used: 9531673523424
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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