ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags16m17 |
|---|---|
| Clone Library Name | barley_pub |
>VA0D2_ARATH (Q9LHA4) Probable vacuolar ATP synthase subunit d 2 (EC 3.6.3.14)| (V-ATPase d subunit 2) (Vacuolar proton pump d subunit 2) Length = 351 Score = 100 bits (250), Expect = 1e-21 Identities = 47/54 (87%), Positives = 52/54 (96%) Frame = -2 Query: 445 VKRLRLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSVVTIF 284 V+RL L+FEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQK+R+HDSVV +F Sbjct: 298 VRRLCLAFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKSRIHDSVVYMF 351
>VA0D1_ARATH (Q9LJI5) Probable vacuolar ATP synthase subunit d 1 (EC 3.6.3.14)| (V-ATPase d subunit 1) (Vacuolar proton pump d subunit 1) Length = 351 Score = 100 bits (250), Expect = 1e-21 Identities = 47/54 (87%), Positives = 52/54 (96%) Frame = -2 Query: 445 VKRLRLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSVVTIF 284 V+RL L+FEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQK+R+HDSVV +F Sbjct: 298 VRRLCLAFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKSRIHDSVVYMF 351
>VA0D_SCHPO (O13753) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase 39 kDa subunit) (V-ATPase subunit M39) Length = 343 Score = 65.1 bits (157), Expect = 8e-11 Identities = 25/41 (60%), Positives = 37/41 (90%) Frame = -2 Query: 433 RLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNR 311 +L+F QQFHY + +A+++LREQEIRNL WI+EC++QNQ++R Sbjct: 295 KLAFLQQFHYGIVYAFLKLREQEIRNLTWIAECISQNQRDR 335
>VA0D_DICDI (P54641) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase 41 kDa accessory protein) (DVA41) Length = 356 Score = 64.7 bits (156), Expect = 1e-10 Identities = 24/46 (52%), Positives = 39/46 (84%) Frame = -2 Query: 433 RLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSV 296 R++FE Q+ Y VF+AY++LREQEIRN++WI+EC++QN K +++ + Sbjct: 308 RMAFEDQYGYGVFYAYIKLREQEIRNIVWIAECISQNMKQKMNQYI 353
>VA0D_NEUCR (P53659) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase 41 kDa subunit) Length = 364 Score = 63.9 bits (154), Expect = 2e-10 Identities = 24/46 (52%), Positives = 40/46 (86%) Frame = -2 Query: 433 RLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSV 296 +++F +QF YA+ +A+++LREQEIRN+ WI+EC+AQNQK R+++ + Sbjct: 316 KMAFTRQFTYAIVYAWVKLREQEIRNITWIAECIAQNQKERINNYI 361
>VA0D_MANSE (Q25531) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase 40 kDa subunit) (M40) Length = 348 Score = 61.2 bits (147), Expect = 1e-09 Identities = 25/48 (52%), Positives = 39/48 (81%) Frame = -2 Query: 427 SFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSVVTIF 284 +F QQFH+ VF++Y++L+EQE RN++WISECVAQ + ++ D+ + IF Sbjct: 302 AFLQQFHFGVFYSYLKLKEQECRNIVWISECVAQKHRAKI-DNYIPIF 348
>VA0D1_DROME (Q9W4P5) Vacuolar ATP synthase subunit d 1 (EC 3.6.3.14) (V-ATPase| d subunit 1) (Vacuolar proton pump d subunit 1) (V-ATPase 39 kDa subunit 1) Length = 350 Score = 61.2 bits (147), Expect = 1e-09 Identities = 25/48 (52%), Positives = 39/48 (81%) Frame = -2 Query: 427 SFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSVVTIF 284 +F QQFH+ VF+AY++L+EQE RN++WI+ECVAQ + ++ D+ + IF Sbjct: 304 AFLQQFHFGVFYAYLKLKEQECRNIVWIAECVAQKHRAKI-DNYIPIF 350
>VA0D_PONPY (Q5R6I1) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) Length = 351 Score = 60.8 bits (146), Expect = 1e-09 Identities = 25/54 (46%), Positives = 42/54 (77%) Frame = -2 Query: 445 VKRLRLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSVVTIF 284 VK +L+F QFH+ VF+A+++L+EQE RN++WI+EC+AQ + ++ D+ + IF Sbjct: 299 VKLNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKI-DNYIPIF 351
>VA0D_MOUSE (P51863) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase AC39 subunit) (V-ATPase 40 kDa accessory protein) (P39) (Physophilin) Length = 351 Score = 60.8 bits (146), Expect = 1e-09 Identities = 25/54 (46%), Positives = 42/54 (77%) Frame = -2 Query: 445 VKRLRLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSVVTIF 284 VK +L+F QFH+ VF+A+++L+EQE RN++WI+EC+AQ + ++ D+ + IF Sbjct: 299 VKLNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKI-DNYIPIF 351
>VA0D_HUMAN (P61421) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase AC39 subunit) (V-ATPase 40 kDa accessory protein) (P39) (32 kDa accessory protein) Length = 351 Score = 60.8 bits (146), Expect = 1e-09 Identities = 25/54 (46%), Positives = 42/54 (77%) Frame = -2 Query: 445 VKRLRLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSVVTIF 284 VK +L+F QFH+ VF+A+++L+EQE RN++WI+EC+AQ + ++ D+ + IF Sbjct: 299 VKLNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKI-DNYIPIF 351
>VA0D_BOVIN (P61420) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase AC39 subunit) (V-ATPase 40 kDa accessory protein) (P39) (32 kDa accessory protein) Length = 351 Score = 60.8 bits (146), Expect = 1e-09 Identities = 25/54 (46%), Positives = 42/54 (77%) Frame = -2 Query: 445 VKRLRLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSVVTIF 284 VK +L+F QFH+ VF+A+++L+EQE RN++WI+EC+AQ + ++ D+ + IF Sbjct: 299 VKLNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKI-DNYIPIF 351
>VA0D2_DROME (Q9VCQ3) Probable vacuolar ATP synthase subunit d 2 (EC 3.6.3.14)| (V-ATPase d subunit 2) (Vacuolar proton pump d subunit 2) (V-ATPase 39 kDa subunit 2) Length = 350 Score = 56.2 bits (134), Expect = 4e-08 Identities = 18/41 (43%), Positives = 36/41 (87%) Frame = -2 Query: 427 SFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVH 305 +F QQ+H+ +F+++++L++ E+RN++WISEC+AQ Q +R++ Sbjct: 302 TFLQQYHFGIFYSFIKLKQLEVRNIVWISECIAQRQTDRIN 342
>VA0D_YEAST (P32366) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase 39 kDa subunit) (V-ATPase subunit M39) Length = 345 Score = 54.7 bits (130), Expect = 1e-07 Identities = 21/46 (45%), Positives = 36/46 (78%) Frame = -2 Query: 433 RLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSV 296 R +F QQF + +A+M+ +EQE+RN+ WI+EC+AQNQ+ R+++ + Sbjct: 297 RDAFTQQFAISTVWAWMKSKEQEVRNITWIAECIAQNQRERINNYI 342
>Y3550_ARATH (Q9MA63) Protein At3g05500| Length = 246 Score = 29.6 bits (65), Expect = 3.5 Identities = 18/72 (25%), Positives = 35/72 (48%) Frame = +2 Query: 200 ELIKSAIDCAIIKAGLLYSHMHSNRGRLKDRHDAVMDPVLLVLGNAFGDPHQVPYLLLS* 379 + +++A A+++ L+Y+ G LK ++V V V+G + H VP +L Sbjct: 26 QFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESVEGAVKTVVGPVYEKYHDVPVEVLKY 85 Query: 380 PHVRKENSIVEL 415 + + S+ EL Sbjct: 86 MDQKVDMSVTEL 97
>YDEP_ECOL6 (Q8FHF8) Protein ydeP| Length = 759 Score = 28.5 bits (62), Expect = 7.9 Identities = 16/67 (23%), Positives = 31/67 (46%) Frame = +1 Query: 31 PTNCTNSATHYGNKHHLFSLPYNCAFYFATKTNNDTLLQF*LFSRIENRNKGNNKS*AYK 210 P + + G + +S P FY + +T+N+ + LF+R + NN + Sbjct: 124 PLSWQQAFDEIGARLQSYSDPNQVEFYTSGRTSNEAAFLYQLFAR---EYRSNN----FP 176 Query: 211 ECNRLCH 231 +C+ +CH Sbjct: 177 DCSNMCH 183 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,479,476 Number of Sequences: 219361 Number of extensions: 1301147 Number of successful extensions: 3282 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3221 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3279 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
