ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags16m15 |
|---|---|
| Clone Library Name | barley_pub |
>GCP5_HUMAN (Q96RT8) Gamma-tubulin complex component 5 (GCP-5)| Length = 1024 Score = 45.4 bits (106), Expect = 1e-04 Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 1/105 (0%) Frame = -3 Query: 536 ATTLDEVMEVHEAYLSSIQRQCFVASDKLWALIASRVKTILGLALDFHNVEQT-LGTGGT 360 A LD+++++H YLS+I +C + + + + +L LAL F + Q LGT Sbjct: 920 AKDLDQLIKIHYRYLSTIHDRCLLREKV--SFVKEAIMKVLNLALMFADGWQAGLGTW-- 975 Query: 359 AASVRARCEMELDRIEKQFDECVVFLLRILSFKLNVGHFPHLADL 225 R E ++++E F C +FL+ IL+ + G FPHL L Sbjct: 976 ------RME-SIEKMESDFKNCHMFLVTILNKAVCRGSFPHLESL 1013
>GCP5_MACFA (Q95K09) Gamma-tubulin complex component 5 (GCP-5) (Fragment)| Length = 725 Score = 45.4 bits (106), Expect = 1e-04 Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 1/105 (0%) Frame = -3 Query: 536 ATTLDEVMEVHEAYLSSIQRQCFVASDKLWALIASRVKTILGLALDFHNVEQT-LGTGGT 360 A LD+++++H YLS+I +C + + + + +L LAL F + Q LGT Sbjct: 621 AKDLDQLIKIHYRYLSTIHDRCLLREKV--SFVKEAIMKVLNLALMFADGWQAGLGTW-- 676 Query: 359 AASVRARCEMELDRIEKQFDECVVFLLRILSFKLNVGHFPHLADL 225 R E ++++E F C +FL+ IL+ + G FPHL L Sbjct: 677 ------RME-SIEKMESDFKNCHMFLVTILNKAVCRGSFPHLESL 714
>GCP6_HUMAN (Q96RT7) Gamma-tubulin complex component 6 (GCP-6)| Length = 1819 Score = 44.7 bits (104), Expect = 2e-04 Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 2/126 (1%) Frame = -3 Query: 566 WTELCDGMASATTLDEVMEVHEAYLSSIQRQCFVASDKLWALIASRVKTILGLALDFHN- 390 W E +A+ L+E+ H YL + + A + + + +I L L F + Sbjct: 1693 WCEFRARLATVGDLEEIQRAHAEYLHKAVFRGLLTEKA--APVMNVIHSIFSLVLKFRSQ 1750 Query: 389 -VEQTLGTGGTAASVRARCEMELDRIEKQFDECVVFLLRILSFKLNVGHFPHLADLVTRI 213 + Q G G + + F FL ++++ +N G+ PHL D + RI Sbjct: 1751 LISQAWGPPGGPRGAEHPNFALMQQSYNTFKYYSHFLFKVVTKLVNRGYQPHLEDFLLRI 1810 Query: 212 NYNHYY 195 N+N+YY Sbjct: 1811 NFNNYY 1816
>GCP3_DROME (Q9XYP8) Gamma-tubulin complex component 3 homolog (Gamma ring| complex protein 91) (dGrip91) (d91p) Length = 917 Score = 41.2 bits (95), Expect = 0.002 Identities = 18/36 (50%), Positives = 24/36 (66%) Frame = -3 Query: 566 WTELCDGMASATTLDEVMEVHEAYLSSIQRQCFVAS 459 W EL M ATTLDE++E HE +L +I CFV++ Sbjct: 726 WVELQKKMQKATTLDEILEAHEKFLQTILVGCFVSN 761
>SPC97_DICDI (Q95ZG3) Spindle pole body component 97 (Spc97) (DdSpc97)| Length = 1177 Score = 37.0 bits (84), Expect = 0.039 Identities = 23/124 (18%), Positives = 52/124 (41%) Frame = -3 Query: 566 WTELCDGMASATTLDEVMEVHEAYLSSIQRQCFVASDKLWALIASRVKTILGLALDFHNV 387 W ++ + + ++ T+D+V+ +H +L + +C + KL ++ + L + F N Sbjct: 854 WNKMKNSIKTSKTVDDVIRIHNDFLETCLTECMLTDTKLVNILMK----FMSLCITFANF 909 Query: 386 EQTLGTGGTAASVRARCEMELDRIEKQFDECVVFLLRILSFKLNVGHFPHLADLVTRINY 207 + + + + E +F + L+ L H+ L+ R++Y Sbjct: 910 TNEMMQDEKNIDTE-QIKKTISSSENKFHAILKVLMDTLKSFSKTESNRHMIHLIHRLDY 968 Query: 206 NHYY 195 N YY Sbjct: 969 NGYY 972
>ALP6_SCHPO (Q9USQ2) Spindle pole body component alp6 (Altered polarity protein| 6) Length = 832 Score = 35.4 bits (80), Expect = 0.11 Identities = 38/141 (26%), Positives = 58/141 (41%), Gaps = 15/141 (10%) Frame = -3 Query: 566 WTELCDGMASAT-TLDEVMEVHEAYLSSIQRQCFVASDKL--WALIASRVKTILGLALDF 396 W EL M TLD +E HE Y++SI + + K ++ IL + L+F Sbjct: 680 WQELQLAMEKPNATLDTYIEAHEKYVTSITHKGLLGGGKSRNEDSFLHQLHDILKVILNF 739 Query: 395 HNVEQTLGTGGTAASVRARCEMEL--DRIEKQ----------FDECVVFLLRILSFKLNV 252 H+ + L + S R R + + D + Q F E L+ L L Sbjct: 740 HDAIELLYNFSCSLSNRIRINVPISTDALAAQYTPIKNELSNFTEEFQVRLQKLLHGLAS 799 Query: 251 GHFPHLADLVTRINYNHYYMS 189 P + L R+NYN +Y+S Sbjct: 800 HKDPEMRFLSVRLNYNEFYVS 820
>GCP3_MOUSE (P58854) Gamma-tubulin complex component 3 (GCP-3)| Length = 905 Score = 35.0 bits (79), Expect = 0.15 Identities = 14/64 (21%), Positives = 35/64 (54%) Frame = -3 Query: 566 WTELCDGMASATTLDEVMEVHEAYLSSIQRQCFVASDKLWALIASRVKTILGLALDFHNV 387 W EL + + A LD ++ HEA+L++I +C + S+ ++ ++++ + ++ N Sbjct: 729 WDELWNRVQQAQDLDHIIAAHEAFLNTITSRCLLDSNS--RVLLNQLRAVFDQIIELQNA 786 Query: 386 EQTL 375 + + Sbjct: 787 QDVM 790
>GCP4_MOUSE (Q9D4F8) Gamma-tubulin complex component 4 (GCP-4)| Length = 667 Score = 33.5 bits (75), Expect = 0.43 Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 1/131 (0%) Frame = -3 Query: 566 WTELCDGMASATTLDEVMEVHEAYLSSIQRQCFVASDKLWALIASRVKTILGLALDFHN- 390 +++L + S + + H+ +LS++ Q F+ ++ + IL L F + Sbjct: 541 FSQLLHQINSTRDFESIRLAHDHFLSNLLAQSFILLKPVFHCL----NEILDLCHSFCSL 596 Query: 389 VEQTLGTGGTAASVRARCEMELDRIEKQFDECVVFLLRILSFKLNVGHFPHLADLVTRIN 210 V Q LG + R +L + K F L +ILS N LA L+ R++ Sbjct: 597 VSQNLGP------LDERGAAQLSILVKGFSRQSSLLFKILSSVRNHQINSDLAQLLLRLD 650 Query: 209 YNHYYMSDTGS 177 YN YY G+ Sbjct: 651 YNKYYTQAGGT 661
>GCP4_HUMAN (Q9UGJ1) Gamma-tubulin complex component 4 (GCP-4) (hGCP4) (h76p)| (Hgrip76) Length = 667 Score = 33.5 bits (75), Expect = 0.43 Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 1/131 (0%) Frame = -3 Query: 566 WTELCDGMASATTLDEVMEVHEAYLSSIQRQCFVASDKLWALIASRVKTILGLALDFHN- 390 +++L + S + + H+ +LS++ Q F+ ++ + IL L F + Sbjct: 541 FSQLLHQINSTRDFESIRLAHDHFLSNLLAQSFILLKPVFHCL----NEILDLCHSFCSL 596 Query: 389 VEQTLGTGGTAASVRARCEMELDRIEKQFDECVVFLLRILSFKLNVGHFPHLADLVTRIN 210 V Q LG + R +L + K F L +ILS N LA L+ R++ Sbjct: 597 VSQNLGP------LDERGAAQLSILVKGFSRQSSLLFKILSSVRNHQINSDLAQLLLRLD 650 Query: 209 YNHYYMSDTGS 177 YN YY G+ Sbjct: 651 YNKYYTQAGGT 661
>GCP3_HUMAN (Q96CW5) Gamma-tubulin complex component 3 (GCP-3) (Spindle pole| body protein Spc98 homolog) (hSpc98) (hGCP3) (h104p) Length = 907 Score = 33.5 bits (75), Expect = 0.43 Identities = 14/64 (21%), Positives = 32/64 (50%) Frame = -3 Query: 566 WTELCDGMASATTLDEVMEVHEAYLSSIQRQCFVASDKLWALIASRVKTILGLALDFHNV 387 W EL + + A LD ++ HE +L +I +C + SD + ++++ + ++ N Sbjct: 731 WDELWNKVQQAQDLDHIIAAHEVFLDTIISRCLLDSDS--RALLNQLRAVFDQIIELQNA 788 Query: 386 EQTL 375 + + Sbjct: 789 QDAI 792
>UREE_STRT2 (Q5M606) Urease accessory protein ureE| Length = 150 Score = 31.2 bits (69), Expect = 2.1 Identities = 19/49 (38%), Positives = 27/49 (55%) Frame = +3 Query: 177 ASGVRHVIVIVVDPRDQIREMGKVAHVQLER*DPQEEHDALVELLLDPI 323 A GV +IV+ P+D + EMG AH+ P E DA + L +DP+ Sbjct: 70 AIGVESQDLIVISPKD-MDEMGITAHILGNTHKPIEVKDAKIYLEVDPV 117
>UREE_STRT1 (Q5M1G5) Urease accessory protein ureE| Length = 150 Score = 31.2 bits (69), Expect = 2.1 Identities = 19/49 (38%), Positives = 27/49 (55%) Frame = +3 Query: 177 ASGVRHVIVIVVDPRDQIREMGKVAHVQLER*DPQEEHDALVELLLDPI 323 A GV +IV+ P+D + EMG AH+ P E DA + L +DP+ Sbjct: 70 AIGVESQDLIVISPKD-MDEMGITAHILGNTHKPIEVKDAKIYLEVDPV 117
>UREE_STRSL (Q55055) Urease accessory protein ureE| Length = 150 Score = 31.2 bits (69), Expect = 2.1 Identities = 19/49 (38%), Positives = 27/49 (55%) Frame = +3 Query: 177 ASGVRHVIVIVVDPRDQIREMGKVAHVQLER*DPQEEHDALVELLLDPI 323 A GV +IV+ P+D + EMG AH+ P E DA + L +DP+ Sbjct: 70 AIGVESQDLIVISPKD-MDEMGITAHILGNTHKPIEVKDAKIYLEVDPV 117
>PHLB2_HUMAN (Q86SQ0) Pleckstrin homology-like domain family B member 2 (Protein| LL5-beta) Length = 1253 Score = 31.2 bits (69), Expect = 2.1 Identities = 21/85 (24%), Positives = 43/85 (50%) Frame = -3 Query: 545 MASATTLDEVMEVHEAYLSSIQRQCFVASDKLWALIASRVKTILGLALDFHNVEQTLGTG 366 ++S + D++M+ H QR+ + ++ L R++TIL L ++ + L TG Sbjct: 416 ISSISGRDDLMDYHRR-----QREERLREQEMERLERQRLETILSLCAEYTKPDSRLSTG 470 Query: 365 GTAASVRARCEMELDRIEKQFDECV 291 T V+ + EL++++ +E V Sbjct: 471 TTVEDVQ-KINKELEKLQLSDEESV 494
>VGLH_EHV1B (Q6DLH1) Glycoprotein H precursor| Length = 848 Score = 30.8 bits (68), Expect = 2.8 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 2/73 (2%) Frame = +1 Query: 259 SLKDRILKRNTTHSSNCFSIRSNSISHLALTDAAVP--PVPRVCSTLWKSNANPSIVLTR 432 ++KDRI +T F++ + + SH+ LTD P P + S N N ++ T Sbjct: 488 AIKDRITWNSTMREVLFFAVGAAAGSHVILTDEPEPGAPAHKDASLFLSLNRNILLLCTA 547 Query: 433 LAIRAHNLSEATK 471 + +H +S K Sbjct: 548 MCTASHAVSAGLK 560
>VGLH_EHV1 (P68330) Glycoprotein H precursor| Length = 848 Score = 30.8 bits (68), Expect = 2.8 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 2/73 (2%) Frame = +1 Query: 259 SLKDRILKRNTTHSSNCFSIRSNSISHLALTDAAVP--PVPRVCSTLWKSNANPSIVLTR 432 ++KDRI +T F++ + + SH+ LTD P P + S N N ++ T Sbjct: 488 AIKDRITWNSTMREVLFFAVGAAAGSHVILTDEPEPGAPAHKDASLFLSLNRNILLLCTA 547 Query: 433 LAIRAHNLSEATK 471 + +H +S K Sbjct: 548 MCTASHAVSAGLK 560
>UREE_STRVE (Q3S3T7) Urease accessory protein ureE| Length = 150 Score = 30.4 bits (67), Expect = 3.6 Identities = 18/47 (38%), Positives = 26/47 (55%) Frame = +3 Query: 183 GVRHVIVIVVDPRDQIREMGKVAHVQLER*DPQEEHDALVELLLDPI 323 GV +IV+ P+D + EMG AH+ P E DA + L +DP+ Sbjct: 72 GVESQDLIVISPKD-MDEMGITAHILGNTHKPIEVKDAKIYLEVDPV 117
>ANGL4_MOUSE (Q9Z1P8) Angiopoietin-related protein 4 precursor| (Angiopoietin-like 4) (Hepatic fibrinogen/angiopoietin-related protein) (HFARP) (Fasting-induced adipose factor) (Secreted protein Bk89) (425O18-1) Length = 410 Score = 30.0 bits (66), Expect = 4.8 Identities = 15/49 (30%), Positives = 24/49 (48%) Frame = +3 Query: 234 EMGKVAHVQLER*DPQEEHDALVELLLDPIQLHLASCPNRCRGPSGAES 380 EM +AH L+ EH L ++ +A+C N C+GP G ++ Sbjct: 40 EMNLLAHGLLQLGHGLREHVERTRGQLGALERRMAACGNACQGPKGKDA 88
>FTHS_METEX (Q83WS0) Formate--tetrahydrofolate ligase (EC 6.3.4.3)| (Formyltetrahydrofolate synthetase) (FHS) (FTHFS) Length = 556 Score = 30.0 bits (66), Expect = 4.8 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = +3 Query: 273 DPQEEHDALVELLLDPIQLHLASCPNRCRGPSGAESLLHIV 395 D EH L EL D +Q+ +C + G +GAE+L V Sbjct: 383 DTDAEHARLKELCRDRLQVEAITCKHWAEGGAGAEALAQAV 423
>ANGL4_RAT (Q6TMA8) Angiopoietin-related protein 4 precursor| (Angiopoietin-like 4) (Hepatic fibrinogen/angiopoietin-related protein) (HFARP) Length = 405 Score = 30.0 bits (66), Expect = 4.8 Identities = 15/48 (31%), Positives = 23/48 (47%) Frame = +3 Query: 234 EMGKVAHVQLER*DPQEEHDALVELLLDPIQLHLASCPNRCRGPSGAE 377 EM +AH L+ EH L ++ +A+C N C+GP G + Sbjct: 40 EMNLLAHGLLQLGHGLREHVERTRGQLGALERRMAACGNACQGPKGTD 87
>SVF1_EMENI (Q5BH63) Survival factor 1| Length = 546 Score = 29.6 bits (65), Expect = 6.2 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = +2 Query: 68 SAWPRQVYIHSPQMELKSTYNPI 136 S WPR V I SPQ+EL + +P+ Sbjct: 413 SPWPRYVTISSPQLELLTKLSPV 435
>ALP4_SCHPO (Q9Y705) Spindle pole body component alp4 (Altered polarity protein| 4) Length = 784 Score = 29.6 bits (65), Expect = 6.2 Identities = 24/120 (20%), Positives = 47/120 (39%) Frame = -3 Query: 566 WTELCDGMASATTLDEVMEVHEAYLSSIQRQCFVASDKLWALIASRVKTILGLALDFHNV 387 W + + +A T+D +M+ H +L + ++C + + +L + + + T A Sbjct: 661 WGKFMGELENARTVDNLMQEHIDFLDTCLKECMLTNSRLLKVQSKLLNTCAMFA------ 714 Query: 386 EQTLGTGGTAASVRARCEMELDRIEKQFDECVVFLLRILSFKLNVGHFPHLADLVTRINY 207 + S R L+ E+ FDE + + + + HL LV NY Sbjct: 715 --------SYTSTFTRSLYLLENSEESFDEGRMDKMEEILRRYEDSFSRHLKSLVNACNY 766 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,841,372 Number of Sequences: 219361 Number of extensions: 1745800 Number of successful extensions: 4796 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 4670 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4794 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4700377760 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
