| Clone Name | rbags16m15 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_466018.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3627 Score = 333 bits (168), Expect = 4e-88 Identities = 348/408 (85%) Strand = Plus / Minus Query: 160 ccagggatcgcagtgaagcttccggtgtcagacatgtaatagtgattgtagttgatcctc 219 |||||||| |||| |||||||||| ||||||||||||||||||| ||||| ||||| ||| Sbjct: 3351 ccagggatggcagagaagcttccgctgtcagacatgtaatagtggttgtaattgattctc 3292 Query: 220 gtgaccaaatccgcgagatggggaaagtggcccacgttcagcttgaaagataggatcctc 279 || || | |||||| |||||||| ||||| || || || ||||||||||||||||||| | Sbjct: 3291 gtaacgagatccgccagatgggggaagtgaccaacattgagcttgaaagataggatccgc 3232 Query: 280 aagaggaacacgacgcactcgtcgaattgcttctcgatccgatccaactccatctcgcat 339 | ||| || || ||||||||||| |||||||||||||| ||||||| |||||||||||| Sbjct: 3231 aggagaaatacaacgcactcgtcaaattgcttctcgatgcgatccacttccatctcgcat 3172 Query: 340 cttgccctaacagatgccgcggtccctccggtgccgagagtttgctccacattgtggaag 399 |||||| | || | || || || || || || || ||||| || || | ||||||||| Sbjct: 3171 cttgccttgacggctggagcagttccaccagtaccaagagtctgttctatgttgtggaag 3112 Query: 400 tctaacgccaatcccagtatagtcttgactcgactggcgatcagagcccacaacttatcc 459 || | |||||||| || || ||||| ||||||||||| || || |||||||||||||| Sbjct: 3111 tcaagtgccaatccaagaatggtcttaactcgactggctatgagggcccacaacttatca 3052 Query: 460 gaggccacaaagcattgtctctgaatagaagaaagatatgcctcatgaacttccatgact 519 ||||||||||||||||||| |||||||||||| || ||||| |||||||||||||||||| Sbjct: 3051 gaggccacaaagcattgtcgctgaatagaagagaggtatgcttcatgaacttccatgact 2992 Query: 520 tcatctaatgtagtagcagatgccatgccatcacaaagctcagtccac 567 ||||| | |||||| || |||||||||||||||||||||||||||||| Sbjct: 2991 tcatccagtgtagtggcggatgccatgccatcacaaagctcagtccac 2944
>dbj|AK121782.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093P19, full insert sequence Length = 3628 Score = 333 bits (168), Expect = 4e-88 Identities = 348/408 (85%) Strand = Plus / Minus Query: 160 ccagggatcgcagtgaagcttccggtgtcagacatgtaatagtgattgtagttgatcctc 219 |||||||| |||| |||||||||| ||||||||||||||||||| ||||| ||||| ||| Sbjct: 3352 ccagggatggcagagaagcttccgctgtcagacatgtaatagtggttgtaattgattctc 3293 Query: 220 gtgaccaaatccgcgagatggggaaagtggcccacgttcagcttgaaagataggatcctc 279 || || | |||||| |||||||| ||||| || || || ||||||||||||||||||| | Sbjct: 3292 gtaacgagatccgccagatgggggaagtgaccaacattgagcttgaaagataggatccgc 3233 Query: 280 aagaggaacacgacgcactcgtcgaattgcttctcgatccgatccaactccatctcgcat 339 | ||| || || ||||||||||| |||||||||||||| ||||||| |||||||||||| Sbjct: 3232 aggagaaatacaacgcactcgtcaaattgcttctcgatgcgatccacttccatctcgcat 3173 Query: 340 cttgccctaacagatgccgcggtccctccggtgccgagagtttgctccacattgtggaag 399 |||||| | || | || || || || || || || ||||| || || | ||||||||| Sbjct: 3172 cttgccttgacggctggagcagttccaccagtaccaagagtctgttctatgttgtggaag 3113 Query: 400 tctaacgccaatcccagtatagtcttgactcgactggcgatcagagcccacaacttatcc 459 || | |||||||| || || ||||| ||||||||||| || || |||||||||||||| Sbjct: 3112 tcaagtgccaatccaagaatggtcttaactcgactggctatgagggcccacaacttatca 3053 Query: 460 gaggccacaaagcattgtctctgaatagaagaaagatatgcctcatgaacttccatgact 519 ||||||||||||||||||| |||||||||||| || ||||| |||||||||||||||||| Sbjct: 3052 gaggccacaaagcattgtcgctgaatagaagagaggtatgcttcatgaacttccatgact 2993 Query: 520 tcatctaatgtagtagcagatgccatgccatcacaaagctcagtccac 567 ||||| | |||||| || |||||||||||||||||||||||||||||| Sbjct: 2992 tcatccagtgtagtggcggatgccatgccatcacaaagctcagtccac 2945
>gb|AY106720.1| Zea mays PCO113091 mRNA sequence Length = 916 Score = 303 bits (153), Expect = 3e-79 Identities = 348/413 (84%) Strand = Plus / Minus Query: 154 cgggacccagggatcgcagtgaagcttccggtgtcagacatgtaatagtgattgtagttg 213 ||||||||||| || |||| |||||| || | ||||||||| ||||||||||||| ||| Sbjct: 708 cgggacccaggaatagcagagaagctcccactatcagacatgaaatagtgattgtaattg 649 Query: 214 atcctcgtgaccaaatccgcgagatggggaaagtggcccacgttcagcttgaaagatagg 273 ||||| || || | ||| || |||||||| || || ||||| || ||||||||||||||| Sbjct: 648 atccttgtaactagatcggcaagatgggggaaatgacccacattgagcttgaaagatagg 589 Query: 274 atcctcaagaggaacacgacgcactcgtcgaattgcttctcgatccgatccaactccatc 333 ||||||| ||| || | ||| ||||| || ||||||||||| ||||| || | |||||| Sbjct: 588 atcctcaggagaaatatgacacactcatcaaattgcttctcaatccggtcgatttccatc 529 Query: 334 tcgcatcttgccctaacagatgccgcggtccctccggtgccgagagtttgctccacattg 393 ||||||| || ||| |||| || || ||||| ||||| | ||||||||| || |||||| Sbjct: 528 tcgcatcgtgtcctcacagctgaagccgtcccaccggtactgagagtttgttctacattg 469 Query: 394 tggaagtctaacgccaatcccagtatagtcttgactcgactggcgatcagagcccacaac 453 |||||||| | |||||||| || |||||||| ||||||||||| || || ||||||| | Sbjct: 468 tggaagtccagtgccaatccaagaatagtcttaactcgactggcaatgagggcccacagc 409 Query: 454 ttatccgaggccacaaagcattgtctctgaatagaagaaagatatgcctcatgaacttcc 513 ||||| ||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| Sbjct: 408 ttatcagaggccacaaagcattgtcgttgaatagaagagagatatgcctcgtgaacttcc 349 Query: 514 atgacttcatctaatgtagtagcagatgccatgccatcacaaagctcagtcca 566 ||||||||||| | ||| ||||||| | |||||||||||||||||||||||| Sbjct: 348 atgacttcatccagtgtggtagcagccgtcatgccatcacaaagctcagtcca 296
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 163 bits (82), Expect = 8e-37 Identities = 109/118 (92%) Strand = Plus / Minus Query: 450 caacttatccgaggccacaaagcattgtctctgaatagaagaaagatatgcctcatgaac 509 ||||||||| ||||||||||||||||||| |||||||||||| || ||||| |||||||| Sbjct: 25644451 caacttatcagaggccacaaagcattgtcgctgaatagaagagaggtatgcttcatgaac 25644392 Query: 510 ttccatgacttcatctaatgtagtagcagatgccatgccatcacaaagctcagtccac 567 ||||||||||||||| | |||||| || |||||||||||||||||||||||||||||| Sbjct: 25644391 ttccatgacttcatccagtgtagtggcggatgccatgccatcacaaagctcagtccac 25644334 Score = 113 bits (57), Expect = 6e-22 Identities = 102/117 (87%) Strand = Plus / Minus Query: 160 ccagggatcgcagtgaagcttccggtgtcagacatgtaatagtgattgtagttgatcctc 219 |||||||| |||| |||||||||| ||||||||||||||||||| ||||| ||||| ||| Sbjct: 25644945 ccagggatggcagagaagcttccgctgtcagacatgtaatagtggttgtaattgattctc 25644886 Query: 220 gtgaccaaatccgcgagatggggaaagtggcccacgttcagcttgaaagataggatc 276 || || | |||||| |||||||| ||||| || || || |||||||||||||||||| Sbjct: 25644885 gtaacgagatccgccagatgggggaagtgaccaacattgagcttgaaagataggatc 25644829 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 292 acgcactcgtcgaattgcttctcgatccgatccaactccatctcgcatcttgcc 345 ||||||||||| |||||||||||||| ||||||| |||||||| ||||||||| Sbjct: 25644706 acgcactcgtcaaattgcttctcgatgcgatccacttccatctcacatcttgcc 25644653
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 163 bits (82), Expect = 8e-37 Identities = 109/118 (92%) Strand = Plus / Plus Query: 450 caacttatccgaggccacaaagcattgtctctgaatagaagaaagatatgcctcatgaac 509 ||||||||| ||||||||||||||||||| |||||||||||| || ||||| |||||||| Sbjct: 19111189 caacttatcagaggccacaaagcattgtcgctgaatagaagagaggtatgcttcatgaac 19111248 Query: 510 ttccatgacttcatctaatgtagtagcagatgccatgccatcacaaagctcagtccac 567 ||||||||||||||| | |||||| || |||||||||||||||||||||||||||||| Sbjct: 19111249 ttccatgacttcatccagtgtagtggcggatgccatgccatcacaaagctcagtccac 19111306 Score = 113 bits (57), Expect = 6e-22 Identities = 102/117 (87%) Strand = Plus / Plus Query: 160 ccagggatcgcagtgaagcttccggtgtcagacatgtaatagtgattgtagttgatcctc 219 |||||||| |||| |||||||||| ||||||||||||||||||| ||||| ||||| ||| Sbjct: 19110696 ccagggatggcagagaagcttccgctgtcagacatgtaatagtggttgtaattgattctc 19110755 Query: 220 gtgaccaaatccgcgagatggggaaagtggcccacgttcagcttgaaagataggatc 276 || || | |||||| |||||||| ||||| || || || |||||||||||||||||| Sbjct: 19110756 gtaacgagatccgccagatgggggaagtgaccaacattgagcttgaaagataggatc 19110812 Score = 75.8 bits (38), Expect = 1e-10 Identities = 50/54 (92%) Strand = Plus / Plus Query: 292 acgcactcgtcgaattgcttctcgatccgatccaactccatctcgcatcttgcc 345 ||||||||||| |||||||||||||| ||||||| |||||||||||||||||| Sbjct: 19110928 acgcactcgtcaaattgcttctcgatgcgatccacttccatctcgcatcttgcc 19110981
>dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0415B12 Length = 157419 Score = 163 bits (82), Expect = 8e-37 Identities = 109/118 (92%) Strand = Plus / Plus Query: 450 caacttatccgaggccacaaagcattgtctctgaatagaagaaagatatgcctcatgaac 509 ||||||||| ||||||||||||||||||| |||||||||||| || ||||| |||||||| Sbjct: 9438 caacttatcagaggccacaaagcattgtcgctgaatagaagagaggtatgcttcatgaac 9497 Query: 510 ttccatgacttcatctaatgtagtagcagatgccatgccatcacaaagctcagtccac 567 ||||||||||||||| | |||||| || |||||||||||||||||||||||||||||| Sbjct: 9498 ttccatgacttcatccagtgtagtggcggatgccatgccatcacaaagctcagtccac 9555 Score = 113 bits (57), Expect = 6e-22 Identities = 102/117 (87%) Strand = Plus / Plus Query: 160 ccagggatcgcagtgaagcttccggtgtcagacatgtaatagtgattgtagttgatcctc 219 |||||||| |||| |||||||||| ||||||||||||||||||| ||||| ||||| ||| Sbjct: 8945 ccagggatggcagagaagcttccgctgtcagacatgtaatagtggttgtaattgattctc 9004 Query: 220 gtgaccaaatccgcgagatggggaaagtggcccacgttcagcttgaaagataggatc 276 || || | |||||| |||||||| ||||| || || || |||||||||||||||||| Sbjct: 9005 gtaacgagatccgccagatgggggaagtgaccaacattgagcttgaaagataggatc 9061 Score = 75.8 bits (38), Expect = 1e-10 Identities = 50/54 (92%) Strand = Plus / Plus Query: 292 acgcactcgtcgaattgcttctcgatccgatccaactccatctcgcatcttgcc 345 ||||||||||| |||||||||||||| ||||||| |||||||||||||||||| Sbjct: 9177 acgcactcgtcaaattgcttctcgatgcgatccacttccatctcgcatcttgcc 9230
>dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0047A17 Length = 149142 Score = 163 bits (82), Expect = 8e-37 Identities = 109/118 (92%) Strand = Plus / Plus Query: 450 caacttatccgaggccacaaagcattgtctctgaatagaagaaagatatgcctcatgaac 509 ||||||||| ||||||||||||||||||| |||||||||||| || ||||| |||||||| Sbjct: 116710 caacttatcagaggccacaaagcattgtcgctgaatagaagagaggtatgcttcatgaac 116769 Query: 510 ttccatgacttcatctaatgtagtagcagatgccatgccatcacaaagctcagtccac 567 ||||||||||||||| | |||||| || |||||||||||||||||||||||||||||| Sbjct: 116770 ttccatgacttcatccagtgtagtggcggatgccatgccatcacaaagctcagtccac 116827 Score = 113 bits (57), Expect = 6e-22 Identities = 102/117 (87%) Strand = Plus / Plus Query: 160 ccagggatcgcagtgaagcttccggtgtcagacatgtaatagtgattgtagttgatcctc 219 |||||||| |||| |||||||||| ||||||||||||||||||| ||||| ||||| ||| Sbjct: 116217 ccagggatggcagagaagcttccgctgtcagacatgtaatagtggttgtaattgattctc 116276 Query: 220 gtgaccaaatccgcgagatggggaaagtggcccacgttcagcttgaaagataggatc 276 || || | |||||| |||||||| ||||| || || || |||||||||||||||||| Sbjct: 116277 gtaacgagatccgccagatgggggaagtgaccaacattgagcttgaaagataggatc 116333 Score = 75.8 bits (38), Expect = 1e-10 Identities = 50/54 (92%) Strand = Plus / Plus Query: 292 acgcactcgtcgaattgcttctcgatccgatccaactccatctcgcatcttgcc 345 ||||||||||| |||||||||||||| ||||||| |||||||||||||||||| Sbjct: 116449 acgcactcgtcaaattgcttctcgatgcgatccacttccatctcgcatcttgcc 116502
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 163 bits (82), Expect = 8e-37 Identities = 109/118 (92%) Strand = Plus / Minus Query: 450 caacttatccgaggccacaaagcattgtctctgaatagaagaaagatatgcctcatgaac 509 ||||||||| ||||||||||||||||||| |||||||||||| || ||||| |||||||| Sbjct: 25572627 caacttatcagaggccacaaagcattgtcgctgaatagaagagaggtatgcttcatgaac 25572568 Query: 510 ttccatgacttcatctaatgtagtagcagatgccatgccatcacaaagctcagtccac 567 ||||||||||||||| | |||||| || |||||||||||||||||||||||||||||| Sbjct: 25572567 ttccatgacttcatccagtgtagtggcggatgccatgccatcacaaagctcagtccac 25572510 Score = 113 bits (57), Expect = 6e-22 Identities = 102/117 (87%) Strand = Plus / Minus Query: 160 ccagggatcgcagtgaagcttccggtgtcagacatgtaatagtgattgtagttgatcctc 219 |||||||| |||| |||||||||| ||||||||||||||||||| ||||| ||||| ||| Sbjct: 25573121 ccagggatggcagagaagcttccgctgtcagacatgtaatagtggttgtaattgattctc 25573062 Query: 220 gtgaccaaatccgcgagatggggaaagtggcccacgttcagcttgaaagataggatc 276 || || | |||||| |||||||| ||||| || || || |||||||||||||||||| Sbjct: 25573061 gtaacgagatccgccagatgggggaagtgaccaacattgagcttgaaagataggatc 25573005 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 292 acgcactcgtcgaattgcttctcgatccgatccaactccatctcgcatcttgcc 345 ||||||||||| |||||||||||||| ||||||| |||||||| ||||||||| Sbjct: 25572882 acgcactcgtcaaattgcttctcgatgcgatccacttccatctcacatcttgcc 25572829
>emb|AL731881.4|CNS08C8L Oryza sativa chromosome 12, . BAC OSJNBa0002L05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 167131 Score = 163 bits (82), Expect = 8e-37 Identities = 109/118 (92%) Strand = Plus / Minus Query: 450 caacttatccgaggccacaaagcattgtctctgaatagaagaaagatatgcctcatgaac 509 ||||||||| ||||||||||||||||||| |||||||||||| || ||||| |||||||| Sbjct: 11689 caacttatcagaggccacaaagcattgtcgctgaatagaagagaggtatgcttcatgaac 11630 Query: 510 ttccatgacttcatctaatgtagtagcagatgccatgccatcacaaagctcagtccac 567 ||||||||||||||| | |||||| || |||||||||||||||||||||||||||||| Sbjct: 11629 ttccatgacttcatccagtgtagtggcggatgccatgccatcacaaagctcagtccac 11572 Score = 113 bits (57), Expect = 6e-22 Identities = 102/117 (87%) Strand = Plus / Minus Query: 160 ccagggatcgcagtgaagcttccggtgtcagacatgtaatagtgattgtagttgatcctc 219 |||||||| |||| |||||||||| ||||||||||||||||||| ||||| ||||| ||| Sbjct: 12183 ccagggatggcagagaagcttccgctgtcagacatgtaatagtggttgtaattgattctc 12124 Query: 220 gtgaccaaatccgcgagatggggaaagtggcccacgttcagcttgaaagataggatc 276 || || | |||||| |||||||| ||||| || || || |||||||||||||||||| Sbjct: 12123 gtaacgagatccgccagatgggggaagtgaccaacattgagcttgaaagataggatc 12067 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 292 acgcactcgtcgaattgcttctcgatccgatccaactccatctcgcatcttgcc 345 ||||||||||| |||||||||||||| ||||||| |||||||| ||||||||| Sbjct: 11944 acgcactcgtcaaattgcttctcgatgcgatccacttccatctcacatcttgcc 11891
>emb|AL732537.4|CNS08C9C Oryza sativa chromosome 12, . BAC OSJNBa0036L12 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 127003 Score = 163 bits (82), Expect = 8e-37 Identities = 109/118 (92%) Strand = Plus / Plus Query: 450 caacttatccgaggccacaaagcattgtctctgaatagaagaaagatatgcctcatgaac 509 ||||||||| ||||||||||||||||||| |||||||||||| || ||||| |||||||| Sbjct: 29267 caacttatcagaggccacaaagcattgtcgctgaatagaagagaggtatgcttcatgaac 29326 Query: 510 ttccatgacttcatctaatgtagtagcagatgccatgccatcacaaagctcagtccac 567 ||||||||||||||| | |||||| || |||||||||||||||||||||||||||||| Sbjct: 29327 ttccatgacttcatccagtgtagtggcggatgccatgccatcacaaagctcagtccac 29384 Score = 113 bits (57), Expect = 6e-22 Identities = 102/117 (87%) Strand = Plus / Plus Query: 160 ccagggatcgcagtgaagcttccggtgtcagacatgtaatagtgattgtagttgatcctc 219 |||||||| |||| |||||||||| ||||||||||||||||||| ||||| ||||| ||| Sbjct: 28773 ccagggatggcagagaagcttccgctgtcagacatgtaatagtggttgtaattgattctc 28832 Query: 220 gtgaccaaatccgcgagatggggaaagtggcccacgttcagcttgaaagataggatc 276 || || | |||||| |||||||| ||||| || || || |||||||||||||||||| Sbjct: 28833 gtaacgagatccgccagatgggggaagtgaccaacattgagcttgaaagataggatc 28889 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 292 acgcactcgtcgaattgcttctcgatccgatccaactccatctcgcatcttgcc 345 ||||||||||| |||||||||||||| ||||||| |||||||| ||||||||| Sbjct: 29012 acgcactcgtcaaattgcttctcgatgcgatccacttccatctcacatcttgcc 29065
>ref|NM_101907.2| Arabidopsis thaliana transferase, transferring glycosyl groups / tubulin binding AT1G20570 mRNA, complete cds Length = 2931 Score = 46.1 bits (23), Expect = 0.13 Identities = 65/79 (82%) Strand = Plus / Minus Query: 176 agcttccggtgtcagacatgtaatagtgattgtagttgatcctcgtgaccaaatccgcga 235 ||||||| |||||||||||||| | | |||||| ||||| || || |||||||| || | Sbjct: 2908 agcttccagtgtcagacatgtagtgataattgtaattgattctggtcaccaaatcagcca 2849 Query: 236 gatggggaaagtggcccac 254 |||| || ||||| ||||| Sbjct: 2848 gatgagggaagtgtcccac 2830
>gb|AC069251.5|AC069251 Genomic sequence for Arabidopsis thaliana BAC F2D10 from chromosome I, complete sequence Length = 143879 Score = 46.1 bits (23), Expect = 0.13 Identities = 65/79 (82%) Strand = Plus / Plus Query: 176 agcttccggtgtcagacatgtaatagtgattgtagttgatcctcgtgaccaaatccgcga 235 ||||||| |||||||||||||| | | |||||| ||||| || || |||||||| || | Sbjct: 12499 agcttccagtgtcagacatgtagtgataattgtaattgattctggtcaccaaatcagcca 12558 Query: 236 gatggggaaagtggcccac 254 |||| || ||||| ||||| Sbjct: 12559 gatgagggaagtgtcccac 12577
>gb|AC027665.4|AC027665 Genomic sequence for Arabidopsis thaliana BAC F5M15 from chromosome I, complete sequence Length = 99231 Score = 46.1 bits (23), Expect = 0.13 Identities = 65/79 (82%) Strand = Plus / Minus Query: 176 agcttccggtgtcagacatgtaatagtgattgtagttgatcctcgtgaccaaatccgcga 235 ||||||| |||||||||||||| | | |||||| ||||| || || |||||||| || | Sbjct: 42616 agcttccagtgtcagacatgtagtgataattgtaattgattctggtcaccaaatcagcca 42557 Query: 236 gatggggaaagtggcccac 254 |||| || ||||| ||||| Sbjct: 42556 gatgagggaagtgtcccac 42538
>gb|AC013264.4| Homo sapiens BAC clone RP11-184N4 from 2, complete sequence Length = 149445 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 101 ccacaaatggagctgaaaagca 122 |||||||||||||||||||||| Sbjct: 53521 ccacaaatggagctgaaaagca 53500
>gb|AC011291.8| Homo sapiens BAC clone RP11-67G7 from 2, complete sequence Length = 150214 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 378 agtttgctccacattgtggaagtct 402 |||||||||||| |||||||||||| Sbjct: 56861 agtttgctccactttgtggaagtct 56837
>gb|AC154172.4| Mus musculus BAC clone RP23-429K7 from chromosome 18, complete sequence Length = 209529 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 515 tgacttcatctaatgtagtag 535 ||||||||||||||||||||| Sbjct: 29390 tgacttcatctaatgtagtag 29410
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 210 gttgatcctcgtgaccaaatccgc 233 |||||||||||||| ||||||||| Sbjct: 2090024 gttgatcctcgtgatcaaatccgc 2090047
>gb|BT009330.1| Triticum aestivum clone wlm24.pk0026.a3:fis, full insert mRNA sequence Length = 1958 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 524 ctaatgtagtagcagatgcc 543 |||||||||||||||||||| Sbjct: 1282 ctaatgtagtagcagatgcc 1263
>emb|AL114785.1|CNS01BWP Botrytis cinerea strain T4 cDNA library Length = 840 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 ggatcctcaagaggaacacg 291 |||||||||||||||||||| Sbjct: 223 ggatcctcaagaggaacacg 204
>emb|AL114137.1|CNS01BEP Botrytis cinerea strain T4 cDNA library Length = 660 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 ggatcctcaagaggaacacg 291 |||||||||||||||||||| Sbjct: 203 ggatcctcaagaggaacacg 184
>gb|AC092680.2| Homo sapiens BAC clone RP11-694B12 from 2, complete sequence Length = 200028 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 464 ccacaaagcattgtctctga 483 |||||||||||||||||||| Sbjct: 187344 ccacaaagcattgtctctga 187363
>dbj|AP008246.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1642C07 Length = 206004 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 524 ctaatgtagtagcagatgcc 543 |||||||||||||||||||| Sbjct: 58887 ctaatgtagtagcagatgcc 58868
>dbj|AP001357.5| Homo sapiens genomic DNA, chromosome 18 clone:RP11-807E13, complete sequence Length = 182382 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 tcaaggctgctgccgagcac 154 |||||||||||||||||||| Sbjct: 52440 tcaaggctgctgccgagcac 52421 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,780,937 Number of Sequences: 3902068 Number of extensions: 3780937 Number of successful extensions: 59169 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59063 Number of HSP's gapped (non-prelim): 106 length of query: 568 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 545 effective length of database: 17,143,297,704 effective search space: 9343097248680 effective search space used: 9343097248680 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)