ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags17b14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_466605.1| Oryza sativa (japonica cultivar-group), mRNA 385 e-103
2ref|XM_506856.1| PREDICTED Oryza sativa (japonica cultivar-group... 385 e-103
3dbj|AK120769.1| Oryza sativa (japonica cultivar-group) cDNA clon... 385 e-103
4dbj|AK105762.1| Oryza sativa (japonica cultivar-group) cDNA clon... 385 e-103
5gb|AY224457.1| Oryza sativa (japonica cultivar-group) isolate 23... 381 e-102
6gb|AY562489.1| Zea mays hydroxymethylbutenyl 4-diphosphate synth... 272 1e-69
7gb|BT014629.1| Lycopersicon esculentum clone 134132R, mRNA sequence 161 4e-36
8gb|AF435086.1| Lycopersicon esculentum GcpE mRNA, complete cds 161 4e-36
9dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 145 2e-31
10dbj|AP004124.3| Oryza sativa (japonica cultivar-group) genomic D... 145 2e-31
11gb|AY184810.1| Catharanthus roseus GCPE protein mRNA, complete cds 141 3e-30
12gb|AY562488.1| Zea mays hydroxymethylbutenyl 4-diphosphate synth... 119 1e-23
13gb|AY497303.1| Nicotiana benthamiana (E)-4-hydroxy-3-methylbut-2... 101 3e-18
14ref|NM_125453.4| Arabidopsis thaliana CLB4 (CHLOROPLAST BIOGENES... 86 2e-13
15ref|NM_180902.2| Arabidopsis thaliana CLB4 (CHLOROPLAST BIOGENES... 86 2e-13
16gb|AF434673.1| Arabidopsis thaliana GcpE mRNA, complete cds; nuc... 86 2e-13
17gb|BT010473.1| Arabidopsis thaliana At5g60600 gene, complete cds 86 2e-13
18gb|AY094472.1| Arabidopsis thaliana AT5g60600/mup24_10 mRNA, com... 86 2e-13
19gb|AY081261.1| Arabidopsis thaliana GcpE protein (At5g60600) mRN... 86 2e-13
20emb|BX833711.1|CNS09Z1Y Arabidopsis thaliana Full-length cDNA Co... 76 2e-10
21dbj|AB005246.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 74 7e-10
22gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome 68 4e-08
23gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, comple... 68 4e-08
24dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome 68 4e-08
25emb|BX908798.1| Parachlamydia-related symbiont UWE25, complete g... 66 2e-07
26gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome 64 7e-07
27emb|CR848038.1| Chlamydophila abortus strain S26/3, complete genome 56 2e-04
28gb|CP000051.1| Chlamydia trachomatis A/HAR-13, complete genome 50 0.010
29emb|BX572097.1| Prochlorococcus marinus MIT9313 complete genome;... 50 0.010
30gb|AE001273.1| Chlamydia trachomatis D/UW-3/CX, complete genome 50 0.010
31gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1... 50 0.010
32gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome 48 0.039
33gb|AY860817.1| Chlamydomonas reinhardtii putative chloroplast 1-... 46 0.15
34emb|AL109618.1|HSJ775C13 Human DNA sequence from clone RP4-775C1... 44 0.61
35ref|NM_001026389.1| Caenorhabditis elegans PaTched Related famil... 44 0.61
36ref|NM_001026388.1| Caenorhabditis elegans PaTched Related famil... 44 0.61
37gb|AC006670.1| Caenorhabditis elegans cosmid K07A3, complete seq... 44 0.61
38gb|AE015925.1| Chlamydophila caviae GPIC, complete genome 44 0.61
39gb|U14530.1|OVU14530 Onchocerca volvulus Ovl3-1 mRNA, partial cds 42 2.4
40emb|AL137128.4|CNS01DWD Human chromosome 14 DNA sequence BAC R-9... 42 2.4
41emb|AL163011.3|CNS01RI8 Human chromosome 14 DNA sequence BAC C-2... 42 2.4
42gb|AC167466.6| Mus musculus chromosome 7, clone RP24-220N8, comp... 40 9.5
43gb|AC113540.12| Mus musculus chromosome 17, clone RP23-158F13, c... 40 9.5
44gb|AC123678.19| Mus musculus chromosome 3, clone RP23-276A22, co... 40 9.5
45ref|XM_925141.2| PREDICTED: Mus musculus Rab6 interacting protei... 40 9.5
46emb|CR788303.14| Zebrafish DNA sequence from clone DKEY-178E17 i... 40 9.5
47gb|AC125044.3| Mus musculus BAC clone RP23-348B10 from chromosom... 40 9.5
48gb|AC025277.10| Homo sapiens chromosome 16 clone CTD-3229J4, com... 40 9.5
49gb|AC102432.9| Mus musculus chromosome 19, clone RP24-114A21, co... 40 9.5
50gb|AC161413.5| Mus musculus chromosome 19, clone RP23-106D17, co... 40 9.5
51gb|AC117667.9| Mus musculus chromosome 6, clone RP23-367C6, comp... 40 9.5
52emb|AL450104.14| Human DNA sequence from clone RP11-93N17 on chr... 40 9.5
53emb|AL603842.9| Mouse DNA sequence from clone RP23-100P23 on chr... 40 9.5
54gb|AC109473.2| Homo sapiens chromosome 5 clone RP11-3B10, comple... 40 9.5
55dbj|AK134383.1| Mus musculus 13 days embryo male testis cDNA, RI... 40 9.5
56dbj|AK155317.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 9.5
57gb|AC074031.16| Homo sapiens 12 BAC RP11-272K23 (Roswell Park Ca... 40 9.5
58gb|AC106783.3| Homo sapiens chromosome 16 clone RP11-347K10, com... 40 9.5
59gb|AC107863.9| Mus musculus chromosome 3, clone RP23-383E14, com... 40 9.5
60gb|AC167140.1| Mus musculus BAC clone RP24-482O17 from chromosom... 40 9.5
61gb|AF116752.1|AF116752 Glycine max seed maturation protein PM23 ... 40 9.5
62gb|AF068060.1|AF068060 Cytophaga sp. 'Jeang 1995' S-layer protei... 40 9.5
63dbj|AP001982.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 9.5
64dbj|AP001977.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 9.5
65gb|AC125102.4| Mus musculus BAC clone RP24-208N22 from 6, comple... 40 9.5
66emb|AL662932.10| Mouse DNA sequence from clone RP23-15B7 on chro... 40 9.5
67gb|AC136500.1| Homo sapiens chromosome 5 clone RP11-56P2, comple... 40 9.5 
>ref|XM_466605.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2494

 Score =  385 bits (194), Expect = e-103
 Identities = 264/286 (92%), Gaps = 1/286 (0%)
 Strand = Plus / Minus

                                                                        
Query: 410  gcctactcctcggtaggaggatccacccaacggccatggtccttgattagctgaatcaag 469
            |||||||||||   ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2398 gcctactcctcaacaggaggatccacccaacggccatggtccttgattaactgaatcaag 2339

                                                                        
Query: 470  gcttcagtggcaccctccattgcaattccccgttgcacaacagtcttcccaacataaagg 529
            || |||||||| |||||||||||||| ||||||||||| || ||||| ||||||||||||
Sbjct: 2338 gcgtcagtggccccctccattgcaatgccccgttgcacgacggtcttgccaacataaagg 2279

                                                                        
Query: 530  tcgatctttccaggagcacctccaacgtatccaaaatcggcatcagccatctctcctggc 589
            |||||||| ||||||||||||||||||||||| ||||| ||||| |||||||| ||||||
Sbjct: 2278 tcgatcttcccaggagcacctccaacgtatccgaaatcagcatcggccatctcccctggc 2219

                                                                        
Query: 590  ccattaacaatgcaacccataatagcaatagagacgccaggcagatgagaggtcttctct 649
            ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 2218 ccattgacaatgcaacccatgatagcaatagagacgcctggcagatgagaggtcttctct 2159

                                                          
Query: 650  ctaatctgagcactgatttcttggaggtcgaaagagcgttcgccca 695
            |||||||||||||||| |||||||||||| |||||| || ||||||
Sbjct: 2158 ctaatctgagcactgacttcttggaggtc-aaagagtgtccgccca 2114
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>ref|XM_506856.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1669_F01.30 mRNA
          Length = 2675

 Score =  385 bits (194), Expect = e-103
 Identities = 264/286 (92%), Gaps = 1/286 (0%)
 Strand = Plus / Minus

                                                                        
Query: 410  gcctactcctcggtaggaggatccacccaacggccatggtccttgattagctgaatcaag 469
            |||||||||||   ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2391 gcctactcctcaacaggaggatccacccaacggccatggtccttgattaactgaatcaag 2332

                                                                        
Query: 470  gcttcagtggcaccctccattgcaattccccgttgcacaacagtcttcccaacataaagg 529
            || |||||||| |||||||||||||| ||||||||||| || ||||| ||||||||||||
Sbjct: 2331 gcgtcagtggccccctccattgcaatgccccgttgcacgacggtcttgccaacataaagg 2272

                                                                        
Query: 530  tcgatctttccaggagcacctccaacgtatccaaaatcggcatcagccatctctcctggc 589
            |||||||| ||||||||||||||||||||||| ||||| ||||| |||||||| ||||||
Sbjct: 2271 tcgatcttcccaggagcacctccaacgtatccgaaatcagcatcggccatctcccctggc 2212

                                                                        
Query: 590  ccattaacaatgcaacccataatagcaatagagacgccaggcagatgagaggtcttctct 649
            ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 2211 ccattgacaatgcaacccatgatagcaatagagacgcctggcagatgagaggtcttctct 2152

                                                          
Query: 650  ctaatctgagcactgatttcttggaggtcgaaagagcgttcgccca 695
            |||||||||||||||| |||||||||||| |||||| || ||||||
Sbjct: 2151 ctaatctgagcactgacttcttggaggtc-aaagagtgtccgccca 2107
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>dbj|AK120769.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008D09, full
            insert sequence
          Length = 2675

 Score =  385 bits (194), Expect = e-103
 Identities = 264/286 (92%), Gaps = 1/286 (0%)
 Strand = Plus / Minus

                                                                        
Query: 410  gcctactcctcggtaggaggatccacccaacggccatggtccttgattagctgaatcaag 469
            |||||||||||   ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2391 gcctactcctcaacaggaggatccacccaacggccatggtccttgattaactgaatcaag 2332

                                                                        
Query: 470  gcttcagtggcaccctccattgcaattccccgttgcacaacagtcttcccaacataaagg 529
            || |||||||| |||||||||||||| ||||||||||| || ||||| ||||||||||||
Sbjct: 2331 gcgtcagtggccccctccattgcaatgccccgttgcacgacggtcttgccaacataaagg 2272

                                                                        
Query: 530  tcgatctttccaggagcacctccaacgtatccaaaatcggcatcagccatctctcctggc 589
            |||||||| ||||||||||||||||||||||| ||||| ||||| |||||||| ||||||
Sbjct: 2271 tcgatcttcccaggagcacctccaacgtatccgaaatcagcatcggccatctcccctggc 2212

                                                                        
Query: 590  ccattaacaatgcaacccataatagcaatagagacgccaggcagatgagaggtcttctct 649
            ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 2211 ccattgacaatgcaacccatgatagcaatagagacgcctggcagatgagaggtcttctct 2152

                                                          
Query: 650  ctaatctgagcactgatttcttggaggtcgaaagagcgttcgccca 695
            |||||||||||||||| |||||||||||| |||||| || ||||||
Sbjct: 2151 ctaatctgagcactgacttcttggaggtc-aaagagtgtccgccca 2107
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>dbj|AK105762.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-D08, full
            insert sequence
          Length = 2494

 Score =  385 bits (194), Expect = e-103
 Identities = 264/286 (92%), Gaps = 1/286 (0%)
 Strand = Plus / Minus

                                                                        
Query: 410  gcctactcctcggtaggaggatccacccaacggccatggtccttgattagctgaatcaag 469
            |||||||||||   ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2398 gcctactcctcaacaggaggatccacccaacggccatggtccttgattaactgaatcaag 2339

                                                                        
Query: 470  gcttcagtggcaccctccattgcaattccccgttgcacaacagtcttcccaacataaagg 529
            || |||||||| |||||||||||||| ||||||||||| || ||||| ||||||||||||
Sbjct: 2338 gcgtcagtggccccctccattgcaatgccccgttgcacgacggtcttgccaacataaagg 2279

                                                                        
Query: 530  tcgatctttccaggagcacctccaacgtatccaaaatcggcatcagccatctctcctggc 589
            |||||||| ||||||||||||||||||||||| ||||| ||||| |||||||| ||||||
Sbjct: 2278 tcgatcttcccaggagcacctccaacgtatccgaaatcagcatcggccatctcccctggc 2219

                                                                        
Query: 590  ccattaacaatgcaacccataatagcaatagagacgccaggcagatgagaggtcttctct 649
            ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 2218 ccattgacaatgcaacccatgatagcaatagagacgcctggcagatgagaggtcttctct 2159

                                                          
Query: 650  ctaatctgagcactgatttcttggaggtcgaaagagcgttcgccca 695
            |||||||||||||||| |||||||||||| |||||| || ||||||
Sbjct: 2158 ctaatctgagcactgacttcttggaggtc-aaagagtgtccgccca 2114
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>gb|AY224457.1| Oryza sativa (japonica cultivar-group) isolate 23493 isoprenoid
            biosynthesis-like protein mRNA, partial cds
          Length = 1827

 Score =  381 bits (192), Expect = e-102
 Identities = 253/272 (93%), Gaps = 1/272 (0%)
 Strand = Plus / Minus

                                                                        
Query: 424  aggaggatccacccaacggccatggtccttgattagctgaatcaaggcttcagtggcacc 483
            ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||
Sbjct: 1815 aggaggatccacccaacggccatggtccttgattaactgaatcaaggcgtcagtggcccc 1756

                                                                        
Query: 484  ctccattgcaattccccgttgcacaacagtcttcccaacataaaggtcgatctttccagg 543
            |||||||||||| ||||||||||| || ||||| |||||||||||||||||||| |||||
Sbjct: 1755 ctccattgcaatgccccgttgcacgacggtcttgccaacataaaggtcgatcttcccagg 1696

                                                                        
Query: 544  agcacctccaacgtatccaaaatcggcatcagccatctctcctggcccattaacaatgca 603
            |||||||||||||||||| ||||| ||||| |||||||| ||||||||||| ||||||||
Sbjct: 1695 agcacctccaacgtatccgaaatcagcatcggccatctcccctggcccattgacaatgca 1636

                                                                        
Query: 604  acccataatagcaatagagacgccaggcagatgagaggtcttctctctaatctgagcact 663
            |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1635 acccatgatagcaatagagacgcctggcagatgagaggtcttctctctaatctgagcact 1576

                                            
Query: 664  gatttcttggaggtcgaaagagcgttcgccca 695
            || |||||||||||| |||||| || ||||||
Sbjct: 1575 gacttcttggaggtc-aaagagtgtccgccca 1545
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>gb|AY562489.1| Zea mays hydroxymethylbutenyl 4-diphosphate synthase (Hds1) mRNA,
            complete cds
          Length = 2631

 Score =  272 bits (137), Expect = 1e-69
 Identities = 246/281 (87%), Gaps = 1/281 (0%)
 Strand = Plus / Minus

                                                                        
Query: 411  cctactcctcggtaggaggatccacccaacggccatggtccttgattagctgaatcaagg 470
            |||||||||||| ||||||||||||||| ||||||||||||||||| ||||| |||||||
Sbjct: 2443 cctactcctcggcaggaggatccacccatcggccatggtccttgatcagctggatcaagg 2384

                                                                        
Query: 471  cttcagtggcaccctccattgcaattccccgttgcacaacagtcttcccaacataaaggt 530
            | ||||||||||| ||||| || ||  | || |||||||| ||||| || || |||||||
Sbjct: 2383 cgtcagtggcaccttccatggcgatggcgcgctgcacaacggtcttgccgacgtaaaggt 2324

                                                                        
Query: 531  cgatctttccaggagcacctccaacgtatccaaaatcggcatcagccatctctcctggcc 590
            |||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 2323 cgatctttccgggagcgcctccaacgtacccaaaatcggcatcagccatctctcctggtc 2264

                                                                        
Query: 591  cattaacaatgcaacccataatagcaatagagacgccaggcagatgagaggtcttctctc 650
            |||| ||||| || ||||| ||||| || ||||| || ||||||||||||||||| ||||
Sbjct: 2263 cattgacaatacagcccatgatagcgatcgagacacctggcagatgagaggtcttttctc 2204

                                                     
Query: 651  taatctgagcactgatttcttggaggtcgaaagagcgttcg 691
            |||||| ||| |||||||| || ||||| |||||| |||||
Sbjct: 2203 taatctcagcgctgatttcctgaaggtc-aaagagtgttcg 2164
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>gb|BT014629.1| Lycopersicon esculentum clone 134132R, mRNA sequence
          Length = 2527

 Score =  161 bits (81), Expect = 4e-36
 Identities = 222/269 (82%)
 Strand = Plus / Minus

                                                                        
Query: 413  tactcctcggtaggaggatccacccaacggccatggtccttgattagctgaatcaaggct 472
            |||||||||||||||||||| ||||| ||| |||| || ||||||||||| ||||  || 
Sbjct: 2271 tactcctcggtaggaggatcaacccagcggtcatgatctttgattagctggatcagtgca 2212

                                                                        
Query: 473  tcagtggcaccctccattgcaattccccgttgcacaacagtcttcccaacataaaggtcg 532
            || || |||  ||||||| ||||  | |||| ||| || ||||| || || |||||||| 
Sbjct: 2211 tccgttgcatgctccatttcaatagcgcgtttcaccactgtcttgccgacgtaaaggtca 2152

                                                                        
Query: 533  atctttccaggagcacctccaacgtatccaaaatcggcatcagccatctctcctggccca 592
            ||||||||||||||||| ||||| |||||||| || |||||||||||||| || || |||
Sbjct: 2151 atctttccaggagcaccaccaacatatccaaagtcagcatcagccatctccccaggtcca 2092

                                                                        
Query: 593  ttaacaatgcaacccataatagcaatagagacgccaggcagatgagaggtcttctctcta 652
            || |||||||||||||| || ||||| || || |||||||  || || ||||||||||||
Sbjct: 2091 ttcacaatgcaacccatgatggcaattgaaacaccaggcaagtgtgacgtcttctctcta 2032

                                         
Query: 653  atctgagcactgatttcttggaggtcgaa 681
            || ||||| || || ||||| || |||||
Sbjct: 2031 atttgagcgcttatctcttgaagatcgaa 2003
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>gb|AF435086.1| Lycopersicon esculentum GcpE mRNA, complete cds
          Length = 2373

 Score =  161 bits (81), Expect = 4e-36
 Identities = 222/269 (82%)
 Strand = Plus / Minus

                                                                        
Query: 413  tactcctcggtaggaggatccacccaacggccatggtccttgattagctgaatcaaggct 472
            |||||||||||||||||||| ||||| ||| |||| || ||||||||||| ||||  || 
Sbjct: 2293 tactcctcggtaggaggatcaacccagcggtcatgatctttgattagctggatcagtgca 2234

                                                                        
Query: 473  tcagtggcaccctccattgcaattccccgttgcacaacagtcttcccaacataaaggtcg 532
            || || |||  ||||||| ||||  | |||| ||| || ||||| || || |||||||| 
Sbjct: 2233 tccgttgcatgctccatttcaatagcgcgtttcaccactgtcttgccgacgtaaaggtca 2174

                                                                        
Query: 533  atctttccaggagcacctccaacgtatccaaaatcggcatcagccatctctcctggccca 592
            ||||||||||||||||| ||||| |||||||| || |||||||||||||| || || |||
Sbjct: 2173 atctttccaggagcaccaccaacatatccaaagtcagcatcagccatctccccaggtcca 2114

                                                                        
Query: 593  ttaacaatgcaacccataatagcaatagagacgccaggcagatgagaggtcttctctcta 652
            || |||||||||||||| || ||||| || || |||||||  || || ||||||||||||
Sbjct: 2113 ttcacaatgcaacccatgatggcaattgaaacaccaggcaagtgtgacgtcttctctcta 2054

                                         
Query: 653  atctgagcactgatttcttggaggtcgaa 681
            || ||||| || || ||||| || |||||
Sbjct: 2053 atttgagcgcttatctcttgaagatcgaa 2025
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  145 bits (73), Expect = 2e-31
 Identities = 94/101 (93%)
 Strand = Plus / Plus

                                                                            
Query: 518      ccaacataaaggtcgatctttccaggagcacctccaacgtatccaaaatcggcatcagcc 577
                |||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||
Sbjct: 23673319 ccaacataaaggtcgatcttcccaggagcacctccaacgtatccgaaatcagcatcggcc 23673378

                                                         
Query: 578      atctctcctggcccattaacaatgcaacccataatagcaat 618
                ||||| ||||||||||| |||||||||||||| ||||||||
Sbjct: 23673379 atctcccctggcccattgacaatgcaacccatgatagcaat 23673419



 Score =  139 bits (70), Expect = 1e-29
 Identities = 91/98 (92%)
 Strand = Plus / Plus

                                                                            
Query: 410      gcctactcctcggtaggaggatccacccaacggccatggtccttgattagctgaatcaag 469
                |||||||||||   ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 23672982 gcctactcctcaacaggaggatccacccaacggccatggtccttgattaactgaatcaag 23673041

                                                      
Query: 470      gcttcagtggcaccctccattgcaattccccgttgcac 507
                || |||||||| |||||||||||||| |||||||||||
Sbjct: 23673042 gcgtcagtggccccctccattgcaatgccccgttgcac 23673079



 Score =  105 bits (53), Expect = 2e-19
 Identities = 72/77 (93%), Gaps = 1/77 (1%)
 Strand = Plus / Plus

                                                                            
Query: 619      agagacgccaggcagatgagaggtcttctctctaatctgagcactgatttcttggaggtc 678
                ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 23673510 agagacgcctggcagatgagaggtcttctctctaatctgagcactgacttcttggaggtc 23673569

                                 
Query: 679      gaaagagcgttcgccca 695
                 |||||| || ||||||
Sbjct: 23673570 -aaagagtgtccgccca 23673585
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>dbj|AP004124.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1669_F01
          Length = 140019

 Score =  145 bits (73), Expect = 2e-31
 Identities = 94/101 (93%)
 Strand = Plus / Plus

                                                                          
Query: 518    ccaacataaaggtcgatctttccaggagcacctccaacgtatccaaaatcggcatcagcc 577
              |||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||
Sbjct: 114419 ccaacataaaggtcgatcttcccaggagcacctccaacgtatccgaaatcagcatcggcc 114478

                                                       
Query: 578    atctctcctggcccattaacaatgcaacccataatagcaat 618
              ||||| ||||||||||| |||||||||||||| ||||||||
Sbjct: 114479 atctcccctggcccattgacaatgcaacccatgatagcaat 114519



 Score =  139 bits (70), Expect = 1e-29
 Identities = 91/98 (92%)
 Strand = Plus / Plus

                                                                          
Query: 410    gcctactcctcggtaggaggatccacccaacggccatggtccttgattagctgaatcaag 469
              |||||||||||   ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 114082 gcctactcctcaacaggaggatccacccaacggccatggtccttgattaactgaatcaag 114141

                                                    
Query: 470    gcttcagtggcaccctccattgcaattccccgttgcac 507
              || |||||||| |||||||||||||| |||||||||||
Sbjct: 114142 gcgtcagtggccccctccattgcaatgccccgttgcac 114179



 Score =  105 bits (53), Expect = 2e-19
 Identities = 72/77 (93%), Gaps = 1/77 (1%)
 Strand = Plus / Plus

                                                                          
Query: 619    agagacgccaggcagatgagaggtcttctctctaatctgagcactgatttcttggaggtc 678
              ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 114610 agagacgcctggcagatgagaggtcttctctctaatctgagcactgacttcttggaggtc 114669

                               
Query: 679    gaaagagcgttcgccca 695
               |||||| || ||||||
Sbjct: 114670 -aaagagtgtccgccca 114685
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>gb|AY184810.1| Catharanthus roseus GCPE protein mRNA, complete cds
          Length = 2223

 Score =  141 bits (71), Expect = 3e-30
 Identities = 209/255 (81%)
 Strand = Plus / Minus

                                                                        
Query: 424  aggaggatccacccaacggccatggtccttgattagctgaatcaaggcttcagtggcacc 483
            ||||||||| ||||| || ||||| || || |||||||||||||  || || || |||  
Sbjct: 2211 aggaggatcaacccagcgcccatgatctttaattagctgaatcagtgcatctgttgcatg 2152

                                                                        
Query: 484  ctccattgcaattccccgttgcacaacagtcttcccaacataaaggtcgatctttccagg 543
            ||||||  ||||||| |||| ||| || ||||| ||||| ||||| || |||||||||||
Sbjct: 2151 ctccatatcaattcctcgtttcaccaccgtctttccaacgtaaagatcaatctttccagg 2092

                                                                        
Query: 544  agcacctccaacgtatccaaaatcggcatcagccatctctcctggcccattaacaatgca 603
            |||||| ||||| || |||||||| ||||||||||| ||||| || ||||| ||||||||
Sbjct: 2091 agcaccaccaacataaccaaaatctgcatcagccatttctcccggtccattcacaatgca 2032

                                                                        
Query: 604  acccataatagcaatagagacgccaggcagatgagaggtcttctctctaatctgagcact 663
             ||||| || || || || || ||||||| ||| || ||||| |||||||| || |||||
Sbjct: 2031 tcccatgattgcgatcgaaacaccaggcaaatgtgatgtcttttctctaatttgtgcact 1972

                           
Query: 664  gatttcttggaggtc 678
             |||||||| |||||
Sbjct: 1971 tatttcttgaaggtc 1957
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>gb|AY562488.1| Zea mays hydroxymethylbutenyl 4-diphosphate synthase (Hds1) gene,
            complete cds
          Length = 6353

 Score =  119 bits (60), Expect = 1e-23
 Identities = 84/92 (91%)
 Strand = Plus / Minus

                                                                        
Query: 524  taaaggtcgatctttccaggagcacctccaacgtatccaaaatcggcatcagccatctct 583
            ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 5770 taaaggtcgatctttccgggagcgcctccaacgtacccaaaatcggcatcagccatctct 5711

                                            
Query: 584  cctggcccattaacaatgcaacccataatagc 615
            ||||| ||||| ||||| || ||||| |||||
Sbjct: 5710 cctggtccattgacaatacagcccatgatagc 5679



 Score =  109 bits (55), Expect = 1e-20
 Identities = 73/79 (92%)
 Strand = Plus / Minus

                                                                        
Query: 411  cctactcctcggtaggaggatccacccaacggccatggtccttgattagctgaatcaagg 470
            |||||||||||| ||||||||||||||| ||||||||||||||||| ||||| |||||||
Sbjct: 6192 cctactcctcggcaggaggatccacccatcggccatggtccttgatcagctggatcaagg 6133

                               
Query: 471  cttcagtggcaccctccat 489
            | ||||||||||| |||||
Sbjct: 6132 cgtcagtggcaccttccat 6114



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 63/72 (87%), Gaps = 1/72 (1%)
 Strand = Plus / Minus

                                                                        
Query: 620  gagacgccaggcagatgagaggtcttctctctaatctgagcactgatttcttggaggtcg 679
            ||||| || ||||||||||||||||| |||||||||| ||| |||||||| || ||||| 
Sbjct: 5534 gagacacctggcagatgagaggtcttttctctaatctcagcgctgatttcctgaaggtc- 5476

                        
Query: 680  aaagagcgttcg 691
            |||||| |||||
Sbjct: 5475 aaagagtgttcg 5464
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>gb|AY497303.1| Nicotiana benthamiana (E)-4-hydroxy-3-methylbut-2-enyl diphosphate
           synthase mRNA, partial cds
          Length = 804

 Score =  101 bits (51), Expect = 3e-18
 Identities = 126/151 (83%)
 Strand = Plus / Minus

                                                                       
Query: 522 cataaaggtcgatctttccaggagcacctccaacgtatccaaaatcggcatcagccatct 581
           |||||||||| ||||| ||||||||||| ||||| |||||||| || |||||||||||||
Sbjct: 793 cataaaggtcaatcttcccaggagcaccaccaacatatccaaagtcagcatcagccatct 734

                                                                       
Query: 582 ctcctggcccattaacaatgcaacccataatagcaatagagacgccaggcagatgagagg 641
           | || || ||||| |||||||||||||| || ||||| || || || ||||  || || |
Sbjct: 733 ccccaggtccattcacaatgcaacccatgatggcaattgaaacaccgggcaagtgtgacg 674

                                          
Query: 642 tcttctctctaatctgagcactgatttcttg 672
           ||||||| || || |||||||| || |||||
Sbjct: 673 tcttctcccttatttgagcacttatctcttg 643
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>ref|NM_125453.4| Arabidopsis thaliana CLB4 (CHLOROPLAST BIOGENESIS 4);
            4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
            AT5G60600 (CLB4) transcript variant AT5G60600.2 mRNA,
            complete cds
          Length = 2598

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 139/171 (81%)
 Strand = Plus / Minus

                                                                        
Query: 512  gtcttcccaacataaaggtcgatctttccaggagcacctccaacgtatccaaaatcggca 571
            ||||| || |||||||||||||| ||||| |||| ||| || || ||||| ||||| |||
Sbjct: 2318 gtctttccgacataaaggtcgatttttccgggagaaccacctacatatccgaaatcagca 2259

                                                                        
Query: 572  tcagccatctctcctggcccattaacaatgcaacccataatagcaatagagacgccaggc 631
            || ||||| |||||||| ||||| |||||||| ||||| || || || || |||||||| 
Sbjct: 2258 tctgccatttctcctggtccattcacaatgcatcccatgattgcgatcgaaacgccaggt 2199

                                                               
Query: 632  agatgagaggtcttctctctaatctgagcactgatttcttggaggtcgaaa 682
            | ||| || ||||| ||||  ||||  || ||||||||||| | |||||||
Sbjct: 2198 aaatgggaagtcttttctcggatctcggcgctgatttcttgcaagtcgaaa 2148
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>ref|NM_180902.2| Arabidopsis thaliana CLB4 (CHLOROPLAST BIOGENESIS 4);
            4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
            AT5G60600 (CLB4) transcript variant AT5G60600.1 mRNA,
            complete cds
          Length = 2601

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 139/171 (81%)
 Strand = Plus / Minus

                                                                        
Query: 512  gtcttcccaacataaaggtcgatctttccaggagcacctccaacgtatccaaaatcggca 571
            ||||| || |||||||||||||| ||||| |||| ||| || || ||||| ||||| |||
Sbjct: 2321 gtctttccgacataaaggtcgatttttccgggagaaccacctacatatccgaaatcagca 2262

                                                                        
Query: 572  tcagccatctctcctggcccattaacaatgcaacccataatagcaatagagacgccaggc 631
            || ||||| |||||||| ||||| |||||||| ||||| || || || || |||||||| 
Sbjct: 2261 tctgccatttctcctggtccattcacaatgcatcccatgattgcgatcgaaacgccaggt 2202

                                                               
Query: 632  agatgagaggtcttctctctaatctgagcactgatttcttggaggtcgaaa 682
            | ||| || ||||| ||||  ||||  || ||||||||||| | |||||||
Sbjct: 2201 aaatgggaagtcttttctcggatctcggcgctgatttcttgcaagtcgaaa 2151
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>gb|AF434673.1| Arabidopsis thaliana GcpE mRNA, complete cds; nuclear gene for
            chloroplast product
          Length = 2520

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 139/171 (81%)
 Strand = Plus / Minus

                                                                        
Query: 512  gtcttcccaacataaaggtcgatctttccaggagcacctccaacgtatccaaaatcggca 571
            ||||| || |||||||||||||| ||||| |||| ||| || || ||||| ||||| |||
Sbjct: 2273 gtctttccgacataaaggtcgatttttccgggagaaccacctacatatccgaaatcagca 2214

                                                                        
Query: 572  tcagccatctctcctggcccattaacaatgcaacccataatagcaatagagacgccaggc 631
            || ||||| |||||||| ||||| |||||||| ||||| || || || || |||||||| 
Sbjct: 2213 tctgccatttctcctggtccattcacaatgcatcccatgattgcgatcgaaacgccaggt 2154

                                                               
Query: 632  agatgagaggtcttctctctaatctgagcactgatttcttggaggtcgaaa 682
            | ||| || ||||| ||||  ||||  || ||||||||||| | |||||||
Sbjct: 2153 aaatgggaagtcttttctcggatctcggcgctgatttcttgcaagtcgaaa 2103
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>gb|BT010473.1| Arabidopsis thaliana At5g60600 gene, complete cds
          Length = 2226

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 139/171 (81%)
 Strand = Plus / Minus

                                                                        
Query: 512  gtcttcccaacataaaggtcgatctttccaggagcacctccaacgtatccaaaatcggca 571
            ||||| || |||||||||||||| ||||| |||| ||| || || ||||| ||||| |||
Sbjct: 2123 gtctttccgacataaaggtcgatttttccgggagaaccacctacatatccgaaatcagca 2064

                                                                        
Query: 572  tcagccatctctcctggcccattaacaatgcaacccataatagcaatagagacgccaggc 631
            || ||||| |||||||| ||||| |||||||| ||||| || || || || |||||||| 
Sbjct: 2063 tctgccatttctcctggtccattcacaatgcatcccatgattgcgatcgaaacgccaggt 2004

                                                               
Query: 632  agatgagaggtcttctctctaatctgagcactgatttcttggaggtcgaaa 682
            | ||| || ||||| ||||  ||||  || ||||||||||| | |||||||
Sbjct: 2003 aaatgggaagtcttttctcggatctcggcgctgatttcttgcaagtcgaaa 1953
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>gb|AY094472.1| Arabidopsis thaliana AT5g60600/mup24_10 mRNA, complete cds
          Length = 2413

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 139/171 (81%)
 Strand = Plus / Minus

                                                                        
Query: 512  gtcttcccaacataaaggtcgatctttccaggagcacctccaacgtatccaaaatcggca 571
            ||||| || |||||||||||||| ||||| |||| ||| || || ||||| ||||| |||
Sbjct: 2172 gtctttccgacataaaggtcgatttttccgggagaaccacctacatatccgaaatcagca 2113

                                                                        
Query: 572  tcagccatctctcctggcccattaacaatgcaacccataatagcaatagagacgccaggc 631
            || ||||| |||||||| ||||| |||||||| ||||| || || || || |||||||| 
Sbjct: 2112 tctgccatttctcctggtccattcacaatgcatcccatgattgcgatcgaaacgccaggt 2053

                                                               
Query: 632  agatgagaggtcttctctctaatctgagcactgatttcttggaggtcgaaa 682
            | ||| || ||||| ||||  ||||  || ||||||||||| | |||||||
Sbjct: 2052 aaatgggaagtcttttctcggatctcggcgctgatttcttgcaagtcgaaa 2002
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>gb|AY081261.1| Arabidopsis thaliana GcpE protein (At5g60600) mRNA, complete cds
          Length = 2533

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 139/171 (81%)
 Strand = Plus / Minus

                                                                        
Query: 512  gtcttcccaacataaaggtcgatctttccaggagcacctccaacgtatccaaaatcggca 571
            ||||| || |||||||||||||| ||||| |||| ||| || || ||||| ||||| |||
Sbjct: 2279 gtctttccgacataaaggtcgatttttccgggagaaccacctacatatccgaaatcagca 2220

                                                                        
Query: 572  tcagccatctctcctggcccattaacaatgcaacccataatagcaatagagacgccaggc 631
            || ||||| |||||||| ||||| |||||||| ||||| || || || || |||||||| 
Sbjct: 2219 tctgccatttctcctggtccattcacaatgcatcccatgattgcgatcgaaacgccaggt 2160

                                                               
Query: 632  agatgagaggtcttctctctaatctgagcactgatttcttggaggtcgaaa 682
            | ||| || ||||| ||||  ||||  || ||||||||||| | |||||||
Sbjct: 2159 aaatgggaagtcttttctcggatctcggcgctgatttcttgcaagtcgaaa 2109
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>emb|BX833711.1|CNS09Z1Y Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL72ZB10 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 496

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 83/98 (84%)
 Strand = Plus / Minus

                                                                       
Query: 512 gtcttcccaacataaaggtcgatctttccaggagcacctccaacgtatccaaaatcggca 571
           ||||| || |||||||||||||| ||||| |||| ||| || || ||||| ||||| |||
Sbjct: 259 gtctttccgacataaaggtcgatttttccgggagaaccacctacatatccgaaatcagca 200

                                                 
Query: 572 tcagccatctctcctggcccattaacaatgcaacccat 609
           || ||||| |||||||| ||||| |||||||| |||||
Sbjct: 199 tctgccatttctcctggtccattcacaatgcatcccat 162
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>dbj|AB005246.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUP24
          Length = 77999

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 76/89 (85%)
 Strand = Plus / Minus

                                                                        
Query: 521  acataaaggtcgatctttccaggagcacctccaacgtatccaaaatcggcatcagccatc 580
            |||||||||||||| ||||| |||| ||| || || ||||| ||||| ||||| ||||| 
Sbjct: 6266 acataaaggtcgatttttccgggagaaccacctacatatccgaaatcagcatctgccatt 6207

                                         
Query: 581  tctcctggcccattaacaatgcaacccat 609
            |||||||| ||||| |||||||| |||||
Sbjct: 6206 tctcctggtccattcacaatgcatcccat 6178
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>gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome
          Length = 2572079

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                          
Query: 551    ccaacgtatccaaaatcggcatcagccatctctcctggcccattaacaatgcaacccata 610
              ||||| || |||||||||||||||||||| || ||||| || || |||||||||||||||
Sbjct: 398301 ccaacataaccaaaatcggcatcagccatttcacctggaccgttgacaatgcaacccata 398242

                
Query: 611    at 612
              ||
Sbjct: 398241 at 398240
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>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence
          Length = 6365727

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 46/50 (92%)
 Strand = Plus / Plus

                                                                
Query: 569    gcatcagccatctctcctggcccattaacaatgcaacccataatagcaat 618
              |||||||||||||| ||||| ||||| |||||||||||||||| ||||||
Sbjct: 552065 gcatcagccatctcgcctgggccattgacaatgcaacccataacagcaat 552114
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>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome
          Length = 6413771

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 46/50 (92%)
 Strand = Plus / Plus

                                                                 
Query: 569     gcatcagccatctctcctggcccattaacaatgcaacccataatagcaat 618
               |||||||||||||||||||| ||||| |||||||||||||| | ||||||
Sbjct: 3001471 gcatcagccatctctcctgggccattgacaatgcaacccatgacagcaat 3001520
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>emb|BX908798.1| Parachlamydia-related symbiont UWE25, complete genome
          Length = 2414465

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 60/69 (86%)
 Strand = Plus / Minus

                                                                          
Query: 550    tccaacgtatccaaaatcggcatcagccatctctcctggcccattaacaatgcaacccat 609
              ||||||||| |||||||| ||||| ||||| || || ||||| ||||||||||| |||||
Sbjct: 913805 tccaacgtacccaaaatctgcatcggccatttcccccggcccgttaacaatgcatcccat 913746

                       
Query: 610    aatagcaat 618
              ||| |||||
Sbjct: 913745 aatcgcaat 913737
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>gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome
          Length = 1842899

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                      
Query: 564    aatcggcatcagccatctctcctggcccattaacaatgcaacccataatagcaata 619
              |||| ||||| ||||||||||| || |||||||||||||||||||| | |||||||
Sbjct: 114527 aatcagcatctgccatctctccaggaccattaacaatgcaacccattacagcaata 114472
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>emb|CR848038.1| Chlamydophila abortus strain S26/3, complete genome
          Length = 1144377

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                                  
Query: 560    ccaaaatcggcatcagccatctctcctggcccattaacaatgcaacccataa 611
              |||||||| ||||| ||||| |||||||| ||||||||||| || |||||||
Sbjct: 469300 ccaaaatcagcatctgccatttctcctggaccattaacaatacatcccataa 469351
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>gb|CP000051.1| Chlamydia trachomatis A/HAR-13, complete genome
          Length = 1044459

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                      
Query: 554   acgtatccaaaatcggcatcagccatctctcctggcccatt 594
             ||||| ||||||||||| |||||||| |||||||| |||||
Sbjct: 66323 acgtagccaaaatcggcgtcagccatttctcctgggccatt 66363
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>emb|BX572097.1| Prochlorococcus marinus MIT9313 complete genome; segment 3/7
          Length = 349823

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                       
Query: 569    gcatcagccatctctcctggcccattaacaatgcaacccat 609
              ||||| |||||||| ||||| ||||| ||||||||||||||
Sbjct: 153305 gcatctgccatctcacctggaccattcacaatgcaacccat 153345
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>gb|AE001273.1| Chlamydia trachomatis D/UW-3/CX, complete genome
          Length = 1042519

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                      
Query: 554   acgtatccaaaatcggcatcagccatctctcctggcccatt 594
             ||||| ||||||||||| |||||||| |||||||| |||||
Sbjct: 65598 acgtagccaaaatcggcgtcagccatttctcctgggccatt 65638
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>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome
          Length = 1751080

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                   
Query: 557    tatccaaaatcggcatcagccatctctcctggcccattaacaatgcaacccat 609
              |||||| |||| ||||| |||||||| || || ||||||||||| ||||||||
Sbjct: 932539 tatccataatctgcatctgccatctcaccagggccattaacaatacaacccat 932591
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>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                          
Query: 566    tcggcatcagccatctctcctggcccattaacaatgcaacccat 609
              ||||| || ||||||||||| |||||||| |||||||| |||||
Sbjct: 134983 tcggcgtcggccatctctcccggcccattgacaatgcagcccat 134940
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>gb|AY860817.1| Chlamydomonas reinhardtii putative chloroplast
            1-hydroxy-2-methyl-2-(E)-butenyl-4-diphosphate synthase
            precursor (HDS) mRNA, complete cds; nuclear gene for
            chloroplast product
          Length = 2868

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 68/83 (81%)
 Strand = Plus / Minus

                                                                        
Query: 527  aggtcgatctttccaggagcacctccaacgtatccaaaatcggcatcagccatctctcct 586
            ||||||||||| || || || || || ||||| || || ||||| ||||||||||| |||
Sbjct: 1934 aggtcgatcttgccgggggcgccgcccacgtacccgaagtcggcgtcagccatctcgcct 1875

                                   
Query: 587  ggcccattaacaatgcaacccat 609
            ||||| || || ||||| |||||
Sbjct: 1874 ggcccgttgacgatgcagcccat 1852
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>emb|AL109618.1|HSJ775C13 Human DNA sequence from clone RP4-775C13 on chromosome 20p12.1-13
             Contains an NS1-associated protein 1 (NSAP1) pseudogene,
             complete sequence
          Length = 103819

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 157   ttaaaccaccatggttttctgc 178
             ||||||||||||||||||||||
Sbjct: 83824 ttaaaccaccatggttttctgc 83803
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>ref|NM_001026389.1| Caenorhabditis elegans PaTched Related family member (ptr-12)
            (ptr-12) mRNA, complete cds
          Length = 2242

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 321  atatgtgctgggatgtccactg 342
            ||||||||||||||||||||||
Sbjct: 1947 atatgtgctgggatgtccactg 1926
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>ref|NM_001026388.1| Caenorhabditis elegans PaTched Related family member (ptr-12)
            (ptr-12) mRNA, complete cds
          Length = 3032

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 321  atatgtgctgggatgtccactg 342
            ||||||||||||||||||||||
Sbjct: 2582 atatgtgctgggatgtccactg 2561
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>gb|AC006670.1| Caenorhabditis elegans cosmid K07A3, complete sequence
          Length = 36454

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 321   atatgtgctgggatgtccactg 342
             ||||||||||||||||||||||
Sbjct: 12796 atatgtgctgggatgtccactg 12817
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>gb|AE015925.1| Chlamydophila caviae GPIC, complete genome
          Length = 1173390

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                    
Query: 558    atccaaaatcggcatcagccatctctcctggcccattaacaatgcaacccataa 611
              |||| ||||| | ||||||||| ||||| || ||||||||||| || |||||||
Sbjct: 475756 atccgaaatcagaatcagccatttctccagggccattaacaatacatcccataa 475809
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>gb|U14530.1|OVU14530 Onchocerca volvulus Ovl3-1 mRNA, partial cds
          Length = 1477

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 444  catggtccttgattagctgaatcaa 468
            |||||| ||||||||||||||||||
Sbjct: 1235 catggtacttgattagctgaatcaa 1211
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>emb|AL137128.4|CNS01DWD Human chromosome 14 DNA sequence BAC R-951P22 of library RPCI-11
           from chromosome 14 of Homo sapiens (Human), complete
           sequence
          Length = 228652

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 140 tctaattctagatacagttaa 160
           |||||||||||||||||||||
Sbjct: 866 tctaattctagatacagttaa 846
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>emb|AL163011.3|CNS01RI8 Human chromosome 14 DNA sequence BAC C-2324M15 of library CalTech-D
             from chromosome 14 of Homo sapiens (Human), complete
             sequence
          Length = 100791

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 140   tctaattctagatacagttaa 160
             |||||||||||||||||||||
Sbjct: 20203 tctaattctagatacagttaa 20223
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>gb|AC167466.6| Mus musculus chromosome 7, clone RP24-220N8, complete sequence
          Length = 163721

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 160   aaccaccatggttttctgca 179
             ||||||||||||||||||||
Sbjct: 88305 aaccaccatggttttctgca 88286
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>gb|AC113540.12| Mus musculus chromosome 17, clone RP23-158F13, complete sequence
          Length = 219781

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 574   agccatctctcctggcccat 593
             ||||||||||||||||||||
Sbjct: 46963 agccatctctcctggcccat 46944
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>gb|AC123678.19| Mus musculus chromosome 3, clone RP23-276A22, complete sequence
          Length = 198615

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 294   tctattttatttcccaactg 313
             ||||||||||||||||||||
Sbjct: 83113 tctattttatttcccaactg 83094
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>ref|XM_925141.2| PREDICTED: Mus musculus Rab6 interacting protein 2, transcript
            variant 5 (Rab6ip2), mRNA
          Length = 2678

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 48   aactctgtttctactttctt 67
            ||||||||||||||||||||
Sbjct: 2415 aactctgtttctactttctt 2434
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>emb|CR788303.14| Zebrafish DNA sequence from clone DKEY-178E17 in linkage group 8,
              complete sequence
          Length = 175313

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                  
Query: 295    ctattttatttcccaactgatatacaatatgtgctg 330
              ||||||||||| ||||| | |||||| |||||||||
Sbjct: 108574 ctattttattttccaacagttatacattatgtgctg 108539
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>gb|AC125044.3| Mus musculus BAC clone RP23-348B10 from chromosome 17, complete
             sequence
          Length = 222615

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 574   agccatctctcctggcccat 593
             ||||||||||||||||||||
Sbjct: 51303 agccatctctcctggcccat 51322
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>gb|AC025277.10| Homo sapiens chromosome 16 clone CTD-3229J4, complete sequence
          Length = 189032

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 285    gacattatttctattttatt 304
              ||||||||||||||||||||
Sbjct: 120723 gacattatttctattttatt 120742
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>gb|AC102432.9| Mus musculus chromosome 19, clone RP24-114A21, complete sequence
          Length = 199240

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 160   aaccaccatggttttctgca 179
             ||||||||||||||||||||
Sbjct: 25326 aaccaccatggttttctgca 25345
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>gb|AC161413.5| Mus musculus chromosome 19, clone RP23-106D17, complete sequence
          Length = 215356

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 160    aaccaccatggttttctgca 179
              ||||||||||||||||||||
Sbjct: 105742 aaccaccatggttttctgca 105723
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>gb|AC117667.9| Mus musculus chromosome 6, clone RP23-367C6, complete sequence
          Length = 134538

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 48     aactctgtttctactttctt 67
              ||||||||||||||||||||
Sbjct: 126752 aactctgtttctactttctt 126771
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>emb|AL450104.14| Human DNA sequence from clone RP11-93N17 on chromosome 1 Contains the
             5' end of a novel gene (KIAA1078) and the 3' end of
             ribosomal protein L34 pseudogene 1 (RPL34P1) and a CpG
             island, complete sequence
          Length = 154879

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 287   cattatttctattttatttcccaa 310
             ||||||| ||||||||||||||||
Sbjct: 43723 cattattgctattttatttcccaa 43746
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>emb|AL603842.9| Mouse DNA sequence from clone RP23-100P23 on chromosome 11 Contains the
              5' end of a novel gene, three novel genes, the Slc6a4 gene
              for solute carrier family 6 (neurotransmitter transporter,
              serotonin) member 4, the Blmh gene for bleomycin hydrolase
              and three CpG islands, complete sequence
          Length = 229289

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 574    agccatctctcctggcccat 593
              ||||||||||||||||||||
Sbjct: 213352 agccatctctcctggcccat 213333
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>gb|AC109473.2| Homo sapiens chromosome 5 clone RP11-3B10, complete sequence
          Length = 170363

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 87     tgggttgggatgtcctttgt 106
              ||||||||||||||||||||
Sbjct: 115031 tgggttgggatgtcctttgt 115012
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>dbj|AK134383.1| Mus musculus 13 days embryo male testis cDNA, RIKEN full-length
            enriched library, clone:6030452A18 product:Rab6
            interacting protein 2, full insert sequence
          Length = 2477

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 48   aactctgtttctactttctt 67
            ||||||||||||||||||||
Sbjct: 2214 aactctgtttctactttctt 2233
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>dbj|AK155317.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630218O03
            product:unclassifiable, full insert sequence
          Length = 1914

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 574  agccatctctcctggcccat 593
            ||||||||||||||||||||
Sbjct: 1622 agccatctctcctggcccat 1603
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>gb|AC074031.16| Homo sapiens 12 BAC RP11-272K23 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 163912

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 286   acattatttctattttattt 305
             ||||||||||||||||||||
Sbjct: 39771 acattatttctattttattt 39752
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>gb|AC106783.3| Homo sapiens chromosome 16 clone RP11-347K10, complete sequence
          Length = 179585

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 285   gacattatttctattttatt 304
             ||||||||||||||||||||
Sbjct: 10190 gacattatttctattttatt 10209
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>gb|AC107863.9| Mus musculus chromosome 3, clone RP23-383E14, complete sequence
          Length = 194268

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 294  tctattttatttcccaactg 313
            ||||||||||||||||||||
Sbjct: 7377 tctattttatttcccaactg 7358
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>gb|AC167140.1| Mus musculus BAC clone RP24-482O17 from chromosome 14, complete
             sequence
          Length = 143541

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 286   acattatttctattttattt 305
             ||||||||||||||||||||
Sbjct: 80609 acattatttctattttattt 80590
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>gb|AF116752.1|AF116752 Glycine max seed maturation protein PM23 (PM23) mRNA, partial cds
          Length = 1633

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 656 tgagcactgatttcttggag 675
           ||||||||||||||||||||
Sbjct: 271 tgagcactgatttcttggag 252
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>gb|AF068060.1|AF068060 Cytophaga sp. 'Jeang 1995' S-layer protein precursor, gene, complete
            cds
          Length = 4889

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 149  agatacagttaaaccaccat 168
            ||||||||||||||||||||
Sbjct: 1798 agatacagttaaaccaccat 1779
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>dbj|AP001982.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-344F5, complete
            sequence
          Length = 137996

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 176  tgcatgccatttacaaatgt 195
            ||||||||||||||||||||
Sbjct: 6593 tgcatgccatttacaaatgt 6612
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>dbj|AP001977.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-248G21, complete
              sequences
          Length = 156957

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 176    tgcatgccatttacaaatgt 195
              ||||||||||||||||||||
Sbjct: 155647 tgcatgccatttacaaatgt 155666
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>gb|AC125102.4| Mus musculus BAC clone RP24-208N22 from 6, complete sequence
          Length = 163235

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 48     aactctgtttctactttctt 67
              ||||||||||||||||||||
Sbjct: 120802 aactctgtttctactttctt 120783
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>emb|AL662932.10| Mouse DNA sequence from clone RP23-15B7 on chromosome X, complete
              sequence
          Length = 218740

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 289    ttatttctattttatttccc 308
              ||||||||||||||||||||
Sbjct: 203278 ttatttctattttatttccc 203259
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>gb|AC136500.1| Homo sapiens chromosome 5 clone RP11-56P2, complete sequence
          Length = 183967

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 87     tgggttgggatgtcctttgt 106
              ||||||||||||||||||||
Sbjct: 105202 tgggttgggatgtcctttgt 105183


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,146,696
Number of Sequences: 3902068
Number of extensions: 6146696
Number of successful extensions: 129065
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 128747
Number of HSP's gapped (non-prelim): 315
length of query: 695
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 672
effective length of database: 17,143,297,704
effective search space: 11520296057088
effective search space used: 11520296057088
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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