Clone Information

BLAST Search Result

Clone Name	rbags17b08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RR1_SPIOL (P29344) 30S ribosomal protein S1, chloroplast precurs...	198	1e-50
2	RS1_SYNP6 (P46228) 30S ribosomal protein S1	120	4e-27
3	RS1A_SYNY3 (P73530) 30S ribosomal protein S1 homolog A	114	4e-25
4	RS1_LEULA (P50889) 40S ribosomal protein S1	74	5e-13
5	RS1_SYNP7 (O33698) 30S ribosomal protein S1	71	3e-12
6	RS1H_BACC1 (O06000) 30S ribosomal protein S1 homolog	71	3e-12
7	RS1H_BACSU (P38494) 30S ribosomal protein S1 homolog	70	8e-12
8	RS1B_SYNY3 (P74142) 30S ribosomal protein S1 homolog B	67	4e-11
9	RS1_STAAW (Q8NWM8) 30S ribosomal protein S1	67	5e-11
10	RS1_STAAS (Q6G987) 30S ribosomal protein S1	67	5e-11
11	RS1_STAAR (Q6GGT5) 30S ribosomal protein S1	67	5e-11
12	RS1_STAAN (Q7A5J0) 30S ribosomal protein S1	67	5e-11
13	RS1_STAAM (Q99U14) 30S ribosomal protein S1	67	5e-11
14	RS1_STAAC (Q5HFU7) 30S ribosomal protein S1	67	5e-11
15	RS1_STAS1 (Q49XT0) 30S ribosomal protein S1	66	1e-10
16	RS1_STAEQ (Q5HP69) 30S ribosomal protein S1	65	1e-10
17	ISPH_CLOAB (Q97I09) 4-hydroxy-3-methylbut-2-enyl diphosphate red...	65	2e-10
18	RS1_BUCAP (Q44653) 30S ribosomal protein S1	64	3e-10
19	RS1_BUCBP (Q89AJ3) 30S ribosomal protein S1	64	4e-10
20	RS1_BUCAI (P57395) 30S ribosomal protein S1	64	4e-10
21	RS1_SHIFL (P0AG70) 30S ribosomal protein S1	64	6e-10
22	RS1_ECOLI (P0AG67) 30S ribosomal protein S1	64	6e-10
23	RS1_ECOL6 (P0AG68) 30S ribosomal protein S1	64	6e-10
24	RS1_ECO57 (P0AG69) 30S ribosomal protein S1	64	6e-10
25	RS1_PROSP (P14128) 30S ribosomal protein S1 (Fragment)	64	6e-10
26	RS1_RICPR (Q9ZD28) 30S ribosomal protein S1	62	1e-09
27	RS1_STAHJ (Q4L6I1) 30S ribosomal protein S1	62	2e-09
28	RS1_RHIME (P14129) 30S ribosomal protein S1	61	3e-09
29	RS1_HAEIN (Q48082) 30S ribosomal protein S1	61	4e-09
30	RS1_MYCTU (O06147) 30S ribosomal protein S1	60	8e-09
31	RS1_RHOPA (Q6NDP1) 30S ribosomal protein S1 (RRP-S1)	58	2e-08
32	ISPH_CLOTE (Q895G2) 4-hydroxy-3-methylbut-2-enyl diphosphate red...	58	3e-08
33	RS1_MYCLE (P46836) 30S ribosomal protein S1	58	3e-08
34	RR1_PORPU (P51345) Chloroplast 30S ribosomal protein S1	57	7e-08
35	RS1_CHLMU (P38016) 30S ribosomal protein S1 (70 kDa antigen)	57	7e-08
36	RS1_CHLTR (O84100) 30S ribosomal protein S1	56	9e-08
37	RS1_CHLPN (Q9Z8M3) 30S ribosomal protein S1	56	9e-08
38	GS13_BACSU (P80870) General stress protein 13 (GSP13)	52	2e-06
39	ISPH_FUSNN (Q8RI52) 4-hydroxy-3-methylbut-2-enyl diphosphate red...	50	5e-06
40	RS1_HELPY (P56008) 30S ribosomal protein S1	49	1e-05
41	RS1_HELPJ (Q9ZKF6) 30S ribosomal protein S1	49	1e-05
42	MOG5_CAEEL (Q09530) Probable pre-mRNA-splicing factor ATP-depend...	49	1e-05
43	YHGF_NEIMB (Q51152) Hypothetical protein NMB0075	49	1e-05
44	YHGF_NEIMA (P57072) Hypothetical protein NMA0194	49	1e-05
45	PNP_HAEIN (P44584) Polyribonucleotide nucleotidyltransferase (EC...	49	2e-05
46	PNP_BUCAP (Q8K9H5) Polyribonucleotide nucleotidyltransferase (EC...	48	3e-05
47	PNP_PHOLU (P41121) Polyribonucleotide nucleotidyltransferase (EC...	47	4e-05
48	PNP_ECOLI (P05055) Polyribonucleotide nucleotidyltransferase (EC...	47	5e-05
49	PNP_BUCAI (P57454) Polyribonucleotide nucleotidyltransferase (EC...	46	9e-05
50	PNP_YEREN (O34275) Polyribonucleotide nucleotidyltransferase (EC...	46	1e-04
51	PNP_BUCBP (Q89AF8) Polyribonucleotide nucleotidyltransferase (EC...	45	3e-04
52	IF2A_PYRKO (Q5JE49) Translation initiation factor 2 alpha subuni...	40	0.005
53	RRP5_YEAST (Q05022) rRNA biogenesis protein RRP5	39	0.019
54	RPOE_SULAC (P39466) DNA-directed RNA polymerase subunit E (EC 2....	38	0.025
55	IF2A_AERPE (Q9YF02) Translation initiation factor 2 alpha subuni...	37	0.056
56	RPOE1_METJA (Q57840) DNA-directed RNA polymerase subunit E' (EC ...	35	0.28
57	IF2A_ARCFU (O29723) Translation initiation factor 2 alpha subuni...	34	0.47
58	PCCA_CAEBR (Q612F5) Propionyl-CoA carboxylase alpha chain, mitoc...	31	3.1
59	CHS1_RHIRA (Q12632) Chitin synthase 1 (EC 2.4.1.16) (Chitin-UDP ...	30	5.2
60	DCR1C_BRARE (Q5RGE5) Artemis protein (EC 3.1.-.-) (DNA cross-lin...	30	6.8
61	GLYA1_BURTA (Q2SYS4) Serine hydroxymethyltransferase 1 (EC 2.1.2...	30	8.9
62	Y830_CORDI (Q6NIE7) Hypothetical transport protein DIP0830	30	8.9

>RR1_SPIOL (P29344) 30S ribosomal protein S1, chloroplast precursor (CS1)|
          Length = 411

 Score =  198 bits (503), Expect = 1e-50
 Identities = 99/103 (96%), Positives = 102/103 (99%)
 Frame = -1

Query: 682 PYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLE 503
           PYGAFIDIGGINGLLHVSQISHDRV+DI+TVLQPGDTLKVMILSHDRERGRVSLSTKKLE
Sbjct: 273 PYGAFIDIGGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLE 332

Query: 502 PTPGDMIRNPKLVFEKADEMAQIFRQRIAQAEAMARADMLRFQ 374
           PTPGDMIRNPKLVFEKA+EMAQ FRQRIAQAEAMARADMLRFQ
Sbjct: 333 PTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQ 375

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>RS1_SYNP6 (P46228) 30S ribosomal protein S1|
          Length = 306

 Score =  120 bits (301), Expect = 4e-27
 Identities = 54/90 (60%), Positives = 73/90 (81%)
 Frame = -1

Query: 682 PYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLE 503
           PYGAFIDIGG++GLLH+S+ISHD +    +V    D +KVMI+  D ERGR+SLSTK+LE
Sbjct: 208 PYGAFIDIGGVSGLLHISEISHDHIETPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLE 267

Query: 502 PTPGDMIRNPKLVFEKADEMAQIFRQRIAQ 413
           P PGDM+RNP++V+EKA+EMA  +R+++ Q
Sbjct: 268 PEPGDMVRNPEVVYEKAEEMAAQYREKLKQ 297



 Score = 42.0 bits (97), Expect = 0.002
 Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
 Frame = -1

Query: 682 PYGAFIDIGGING-LLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKL 506
           P GA IDIG      L V ++S +RV     VLQP +  +  ILS + E G+++LS +++
Sbjct: 43  PRGALIDIGAKTAAFLPVQEMSINRVESPEEVLQPSEMREFFILSDENEDGQLTLSIRRI 102

Query: 505 E 503
           E
Sbjct: 103 E 103

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>RS1A_SYNY3 (P73530) 30S ribosomal protein S1 homolog A|
          Length = 328

 Score =  114 bits (284), Expect = 4e-25
 Identities = 56/95 (58%), Positives = 74/95 (77%), Gaps = 1/95 (1%)
 Frame = -1

Query: 682 PYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLE 503
           PYGAFIDIGG++GLLH+S+ISHD +    +V    D +KVMI+  D ERGR+SLSTK+LE
Sbjct: 208 PYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDEIKVMIIDLDAERGRISLSTKQLE 267

Query: 502 PTPGDMIRNPKLVFEKADEMAQIFRQ-RIAQAEAM 401
           P PG M+++  LV E ADEMA+IFRQ R+A+A+ +
Sbjct: 268 PEPGAMLKDRDLVNEMADEMAEIFRQKRLAEAQGI 302

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>RS1_LEULA (P50889) 40S ribosomal protein S1|
          Length = 429

 Score = 73.6 bits (179), Expect = 5e-13
 Identities = 38/80 (47%), Positives = 54/80 (67%)
 Frame = -1

Query: 679 YGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEP 500
           +GAF+D+GG++GL+HVS+ISHDRV + + VL  GD + V IL+ D E+GR+SLS K  + 
Sbjct: 244 FGAFVDLGGVDGLVHVSEISHDRVKNPADVLTKGDKVDVKILALDTEKGRISLSIKATQR 303

Query: 499 TPGDMIRNPKLVFEKADEMA 440
            P D         E AD++A
Sbjct: 304 GPWD---------EAADQIA 314



 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
 Frame = -1

Query: 679 YGAFIDI-GGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLE 503
           +GAF++I  GI GL+HVSQIS+ R+ + S VL+ GD ++V +L       R+SLS K LE
Sbjct: 329 FGAFVEILPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMKALE 388

Query: 502 PTP 494
             P
Sbjct: 389 EKP 391

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>RS1_SYNP7 (O33698) 30S ribosomal protein S1|
          Length = 295

 Score = 71.2 bits (173), Expect = 3e-12
 Identities = 32/88 (36%), Positives = 57/88 (64%)
 Frame = -1

Query: 682 PYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLE 503
           P+G F+D+GG   LL ++QIS   VAD+  + + GD ++ ++++ D  +GR+SLSTK LE
Sbjct: 205 PFGVFVDLGGATALLPINQISQKFVADVGAIFKIGDPIQALVVAIDNTKGRISLSTKVLE 264

Query: 502 PTPGDMIRNPKLVFEKADEMAQIFRQRI 419
             PG+++ N   +   A + A+  R+++
Sbjct: 265 NHPGEILENVAELQASAADRAERARKQL 292

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>RS1H_BACC1 (O06000) 30S ribosomal protein S1 homolog|
          Length = 382

 Score = 70.9 bits (172), Expect = 3e-12
 Identities = 32/66 (48%), Positives = 48/66 (72%)
 Frame = -1

Query: 679 YGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEP 500
           +GAF+++GG++GL+H+SQISH+RV   S VL+ G  +KV +LS D +  R+SLS K  +P
Sbjct: 202 FGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 499 TPGDMI 482
            P + I
Sbjct: 262 GPWENI 267



 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
 Frame = -1

Query: 679 YGAFIDI-GGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKK 509
           +GAF++I  G+ GL+HVSQI++  V + + VL+ G  +KV +L       R+SLS K+
Sbjct: 287 FGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKE 344

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>RS1H_BACSU (P38494) 30S ribosomal protein S1 homolog|
          Length = 382

 Score = 69.7 bits (169), Expect = 8e-12
 Identities = 33/66 (50%), Positives = 46/66 (69%)
 Frame = -1

Query: 679 YGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEP 500
           +GAF+DIGGI+GL+H+SQ+SH  V   S V++ G  +KV +LS DR+  R+SLS K   P
Sbjct: 201 FGAFVDIGGIDGLVHISQLSHSHVEKPSDVVEEGQEVKVKVLSVDRDNERISLSIKDTLP 260

Query: 499 TPGDMI 482
            P + I
Sbjct: 261 GPWNQI 266



 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 27/63 (42%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
 Frame = -1

Query: 679 YGAFIDI-GGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLE 503
           +GAF++I  G+ GL+H+SQIS+  +     VL+ G T+KV +L  +    R+SLS ++LE
Sbjct: 286 FGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNENEERISLSMRELE 345

Query: 502 PTP 494
            TP
Sbjct: 346 ETP 348

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>RS1B_SYNY3 (P74142) 30S ribosomal protein S1 homolog B|
          Length = 305

 Score = 67.4 bits (163), Expect = 4e-11
 Identities = 34/80 (42%), Positives = 49/80 (61%)
 Frame = -1

Query: 682 PYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLE 503
           PYG F++I G+ GLLHVSQ+S  RV  ++T+   G  + V +   D  + R+SLST+ LE
Sbjct: 206 PYGVFVEIEGVTGLLHVSQVSGTRVDSLNTLFAFGQAISVYVQEIDEYKNRISLSTRILE 265

Query: 502 PTPGDMIRNPKLVFEKADEM 443
             PG+++       EK DEM
Sbjct: 266 TYPGELV-------EKFDEM 278

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>RS1_STAAW (Q8NWM8) 30S ribosomal protein S1|
          Length = 391

 Score = 67.0 bits (162), Expect = 5e-11
 Identities = 33/67 (49%), Positives = 46/67 (68%)
 Frame = -1

Query: 679 YGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEP 500
           +GAFIDIGG++GL+HVS++SH+ V     V+  G  +KV I S DR+  R+SLS K   P
Sbjct: 207 FGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLP 266

Query: 499 TPGDMIR 479
           TP + I+
Sbjct: 267 TPFENIK 273



 Score = 54.7 bits (130), Expect = 3e-07
 Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
 Frame = -1

Query: 679 YGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLE 503
           +GAF++I  G+ GL+H+S+I+H  +     VL+PG  + V IL  D E  RVSLS K   
Sbjct: 292 FGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351

Query: 502 P 500
           P
Sbjct: 352 P 352



 Score = 30.4 bits (67), Expect = 5.2
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = -1

Query: 667 IDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMI----LSHDRERGRVSLSTKKLE 503
           I+ G  NG++ +SQ+S   +   S V++ GD ++  +       + E G   LS ++LE
Sbjct: 35  INGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAYVTKVEFDEENETGAYILSRRQLE 93

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>RS1_STAAS (Q6G987) 30S ribosomal protein S1|
          Length = 391

 Score = 67.0 bits (162), Expect = 5e-11
 Identities = 33/67 (49%), Positives = 46/67 (68%)
 Frame = -1

Query: 679 YGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEP 500
           +GAFIDIGG++GL+HVS++SH+ V     V+  G  +KV I S DR+  R+SLS K   P
Sbjct: 207 FGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLP 266

Query: 499 TPGDMIR 479
           TP + I+
Sbjct: 267 TPFENIK 273



 Score = 54.7 bits (130), Expect = 3e-07
 Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
 Frame = -1

Query: 679 YGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLE 503
           +GAF++I  G+ GL+H+S+I+H  +     VL+PG  + V IL  D E  RVSLS K   
Sbjct: 292 FGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351

Query: 502 P 500
           P
Sbjct: 352 P 352



 Score = 30.4 bits (67), Expect = 5.2
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = -1

Query: 667 IDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMI----LSHDRERGRVSLSTKKLE 503
           I+ G  NG++ +SQ+S   +   S V++ GD ++  +       + E G   LS ++LE
Sbjct: 35  INGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAYVTKVEFDEENETGAYILSRRQLE 93

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>RS1_STAAR (Q6GGT5) 30S ribosomal protein S1|
          Length = 391

 Score = 67.0 bits (162), Expect = 5e-11
 Identities = 33/67 (49%), Positives = 46/67 (68%)
 Frame = -1

Query: 679 YGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEP 500
           +GAFIDIGG++GL+HVS++SH+ V     V+  G  +KV I S DR+  R+SLS K   P
Sbjct: 207 FGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLP 266

Query: 499 TPGDMIR 479
           TP + I+
Sbjct: 267 TPFENIK 273



 Score = 54.7 bits (130), Expect = 3e-07
 Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
 Frame = -1

Query: 679 YGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLE 503
           +GAF++I  G+ GL+H+S+I+H  +     VL+PG  + V IL  D E  RVSLS K   
Sbjct: 292 FGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351

Query: 502 P 500
           P
Sbjct: 352 P 352



 Score = 30.4 bits (67), Expect = 5.2
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = -1

Query: 667 IDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMI----LSHDRERGRVSLSTKKLE 503
           I+ G  NG++ +SQ+S   +   S V++ GD ++  +       + E G   LS ++LE
Sbjct: 35  INGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAYVTKVEFDEENETGAYILSRRQLE 93

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>RS1_STAAN (Q7A5J0) 30S ribosomal protein S1|
          Length = 391

 Score = 67.0 bits (162), Expect = 5e-11
 Identities = 33/67 (49%), Positives = 46/67 (68%)
 Frame = -1

Query: 679 YGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEP 500
           +GAFIDIGG++GL+HVS++SH+ V     V+  G  +KV I S DR+  R+SLS K   P
Sbjct: 207 FGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLP 266

Query: 499 TPGDMIR 479
           TP + I+
Sbjct: 267 TPFENIK 273



 Score = 54.7 bits (130), Expect = 3e-07
 Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
 Frame = -1

Query: 679 YGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLE 503
           +GAF++I  G+ GL+H+S+I+H  +     VL+PG  + V IL  D E  RVSLS K   
Sbjct: 292 FGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351

Query: 502 P 500
           P
Sbjct: 352 P 352



 Score = 30.4 bits (67), Expect = 5.2
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = -1

Query: 667 IDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMI----LSHDRERGRVSLSTKKLE 503
           I+ G  NG++ +SQ+S   +   S V++ GD ++  +       + E G   LS ++LE
Sbjct: 35  INGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAYVTKVEFDEENETGAYILSRRQLE 93

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>RS1_STAAM (Q99U14) 30S ribosomal protein S1|
          Length = 391

 Score = 67.0 bits (162), Expect = 5e-11
 Identities = 33/67 (49%), Positives = 46/67 (68%)
 Frame = -1

Query: 679 YGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEP 500
           +GAFIDIGG++GL+HVS++SH+ V     V+  G  +KV I S DR+  R+SLS K   P
Sbjct: 207 FGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLP 266

Query: 499 TPGDMIR 479
           TP + I+
Sbjct: 267 TPFENIK 273



 Score = 54.7 bits (130), Expect = 3e-07
 Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
 Frame = -1

Query: 679 YGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLE 503
           +GAF++I  G+ GL+H+S+I+H  +     VL+PG  + V IL  D E  RVSLS K   
Sbjct: 292 FGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351

Query: 502 P 500
           P
Sbjct: 352 P 352



 Score = 30.4 bits (67), Expect = 5.2
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = -1

Query: 667 IDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMI----LSHDRERGRVSLSTKKLE 503
           I+ G  NG++ +SQ+S   +   S V++ GD ++  +       + E G   LS ++LE
Sbjct: 35  INGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAYVTKVEFDEENETGAYILSRRQLE 93

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>RS1_STAAC (Q5HFU7) 30S ribosomal protein S1|
          Length = 391

 Score = 67.0 bits (162), Expect = 5e-11
 Identities = 33/67 (49%), Positives = 46/67 (68%)
 Frame = -1

Query: 679 YGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEP 500
           +GAFIDIGG++GL+HVS++SH+ V     V+  G  +KV I S DR+  R+SLS K   P
Sbjct: 207 FGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLP 266

Query: 499 TPGDMIR 479
           TP + I+
Sbjct: 267 TPFENIK 273



 Score = 54.7 bits (130), Expect = 3e-07
 Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
 Frame = -1

Query: 679 YGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLE 503
           +GAF++I  G+ GL+H+S+I+H  +     VL+PG  + V IL  D E  RVSLS K   
Sbjct: 292 FGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351

Query: 502 P 500
           P
Sbjct: 352 P 352



 Score = 30.4 bits (67), Expect = 5.2
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = -1

Query: 667 IDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMI----LSHDRERGRVSLSTKKLE 503
           I+ G  NG++ +SQ+S   +   S V++ GD ++  +       + E G   LS ++LE
Sbjct: 35  INGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAYVTKVEFDEENETGAYILSRRQLE 93

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>RS1_STAS1 (Q49XT0) 30S ribosomal protein S1|
          Length = 393

 Score = 65.9 bits (159), Expect = 1e-10
 Identities = 30/67 (44%), Positives = 47/67 (70%)
 Frame = -1

Query: 679 YGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEP 500
           +GAF+DIGG++GL+HVS++SH+ V     V+  G+T+ V I S D++  R+SLS K   P
Sbjct: 207 FGAFVDIGGVDGLVHVSELSHEHVKSPEDVVSIGETVNVKIKSVDKDSERISLSIKDTLP 266

Query: 499 TPGDMIR 479
           +P + I+
Sbjct: 267 SPFESIK 273



 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
 Frame = -1

Query: 679 YGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLE 503
           +GAF++I  G+ GL+H+S+ISH  +   S  L+PG  + V +L  D E  R+SLS K   
Sbjct: 292 FGAFVEIKPGVQGLVHISEISHSHIGSPSEALEPGQVVSVKVLGVDVENERISLSIKATL 351

Query: 502 P 500
           P
Sbjct: 352 P 352

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>RS1_STAEQ (Q5HP69) 30S ribosomal protein S1|
          Length = 392

 Score = 65.5 bits (158), Expect = 1e-10
 Identities = 30/67 (44%), Positives = 47/67 (70%)
 Frame = -1

Query: 679 YGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEP 500
           +GAFIDIGG++GL+HVS++SH+ V     V+  G+ +KV + S +++  R+SLS K   P
Sbjct: 207 FGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSVGEAVKVKVKSVEKDSERISLSIKDTLP 266

Query: 499 TPGDMIR 479
           TP + I+
Sbjct: 267 TPFENIK 273



 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
 Frame = -1

Query: 679 YGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLE 503
           +GAF++I   + GL+H+S+I H  +   + VL+PG  + V IL  D +  R+SLS K   
Sbjct: 292 FGAFVEIAPSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGIDEDNERISLSIKATL 351

Query: 502 P 500
           P
Sbjct: 352 P 352



 Score = 29.6 bits (65), Expect = 8.9
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
 Frame = -1

Query: 667 IDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMI----LSHDRERGRVSLSTKKLE 503
           I+ G  NG++ +SQ+S   + + S V++ GD ++  +       + + G   LS ++LE
Sbjct: 35  INGGKFNGIIPISQLSTHHIENPSEVVKVGDEVEAYVTKIEFDEENDTGAYILSKRQLE 93

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>ISPH_CLOAB (Q97I09) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC|
           1.17.1.2)
          Length = 642

 Score = 65.1 bits (157), Expect = 2e-10
 Identities = 32/62 (51%), Positives = 45/62 (72%)
 Frame = -1

Query: 679 YGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEP 500
           +GAF++I G++GLLHVS+IS  RV   + VL+ GD +KV +LS D+E  ++SLS KKL  
Sbjct: 497 FGAFVEIEGVDGLLHVSEISWGRVEKPADVLKIGDKIKVYVLSVDKENKKLSLSVKKLTE 556

Query: 499 TP 494
            P
Sbjct: 557 NP 558



 Score = 49.3 bits (116), Expect = 1e-05
 Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
 Frame = -1

Query: 679 YGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLE 503
           +GAF+ +  G++GL+H+S+ISH R+A  S  L  G+ +K  IL    E  ++ LS +++E
Sbjct: 582 FGAFVKLEPGVDGLVHISEISHKRIAKPSDALNVGEEIKAKILEVSSEEKKIGLSIREVE 641

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>RS1_BUCAP (Q44653) 30S ribosomal protein S1|
          Length = 559

 Score = 64.3 bits (155), Expect = 3e-10
 Identities = 31/68 (45%), Positives = 44/68 (64%)
 Frame = -1

Query: 679 YGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEP 500
           YGAF+D+GG++GLLH++ ++  RV   S ++  GD + V IL  D+ER RVSL  K+L  
Sbjct: 205 YGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKILKFDKERTRVSLGLKQLGE 264

Query: 499 TPGDMIRN 476
            P   I N
Sbjct: 265 DPWIAISN 272



 Score = 43.1 bits (100), Expect = 8e-04
 Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
 Frame = -1

Query: 679 YGAFIDI-GGINGLLHVSQISHDRVADISTV--LQPGDTLKVMILSHDRERGRVSLSTKK 509
           +G FI + GGI+GL+H+S IS  +++    V   + GD +  ++L  D ER R+SL  K+
Sbjct: 377 FGIFIGLKGGIDGLVHLSDISW-KISGEEAVKNYKKGDEISAVVLQVDAERERISLGIKQ 435

Query: 508 LEPTP 494
           LE  P
Sbjct: 436 LEEDP 440

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>RS1_BUCBP (Q89AJ3) 30S ribosomal protein S1|
          Length = 566

 Score = 63.9 bits (154), Expect = 4e-10
 Identities = 29/62 (46%), Positives = 43/62 (69%)
 Frame = -1

Query: 679 YGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEP 500
           YGAF+D+GG++GLLH++ ++  RV   S ++  GD +K+ IL  DRE+ RVSL  K+L  
Sbjct: 205 YGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNIGDEVKIKILKFDREKIRVSLGLKQLSD 264

Query: 499 TP 494
            P
Sbjct: 265 DP 266



 Score = 43.9 bits (102), Expect = 5e-04
 Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
 Frame = -1

Query: 679 YGAFIDIG-GINGLLHVSQISH-DRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKL 506
           YG F++I  G+ GL+HVS++   ++    S ++Q    +KVMIL  D ER R+SL  K+ 
Sbjct: 290 YGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKMVQVNSVVKVMILDIDEERRRISLGLKQC 349

Query: 505 EPTP 494
           +  P
Sbjct: 350 KNNP 353

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>RS1_BUCAI (P57395) 30S ribosomal protein S1|
          Length = 558

 Score = 63.9 bits (154), Expect = 4e-10
 Identities = 29/62 (46%), Positives = 42/62 (67%)
 Frame = -1

Query: 679 YGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEP 500
           YGAF+D+GG++GLLH++ ++  RV   S ++  GD + + IL  DRER RVSL  K+L  
Sbjct: 205 YGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEINIKILKFDRERTRVSLGLKQLGE 264

Query: 499 TP 494
            P
Sbjct: 265 DP 266



 Score = 42.7 bits (99), Expect = 0.001
 Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
 Frame = -1

Query: 679 YGAFIDI-GGINGLLHVSQISHDRVADISTV-LQPGDTLKVMILSHDRERGRVSLSTKKL 506
           +G FI + GGI+GL+H+S IS     + + V  +  D +  ++L  D ER R+SL  K+L
Sbjct: 377 FGIFIGLNGGIDGLVHLSDISWTIPGEEAVVKYKKNDEISAVVLQVDAERERISLGIKQL 436

Query: 505 EPTP 494
           E  P
Sbjct: 437 EEDP 440



 Score = 42.7 bits (99), Expect = 0.001
 Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
 Frame = -1

Query: 679 YGAFIDIG-GINGLLHVSQISH-DRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKL 506
           YG F++I  G+ GL+HVS++   ++    S V+   D ++VM+L  D ER R+SL  K+ 
Sbjct: 290 YGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVTVNDVVEVMVLDIDEERRRISLGLKQC 349

Query: 505 EPTP 494
           +  P
Sbjct: 350 KINP 353

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>RS1_SHIFL (P0AG70) 30S ribosomal protein S1|
          Length = 557

 Score = 63.5 bits (153), Expect = 6e-10
 Identities = 29/62 (46%), Positives = 42/62 (67%)
 Frame = -1

Query: 679 YGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEP 500
           YGAF+D+GG++GLLH++ ++  RV   S ++  GD + V +L  DRER RVSL  K+L  
Sbjct: 205 YGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGE 264

Query: 499 TP 494
            P
Sbjct: 265 DP 266



 Score = 46.2 bits (108), Expect = 9e-05
 Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
 Frame = -1

Query: 679 YGAFIDIG-GINGLLHVSQISH-DRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKL 506
           YG F++I  G+ GL+HVS++   ++    S V+  GD ++VM+L  D ER R+SL  K+ 
Sbjct: 290 YGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQC 349

Query: 505 EPTP 494
           +  P
Sbjct: 350 KANP 353



 Score = 42.0 bits (97), Expect = 0.002
 Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
 Frame = -1

Query: 679 YGAFIDI-GGINGLLHVSQISHDRVADIST-VLQPGDTLKVMILSHDRERGRVSLSTKKL 506
           +G FI + GGI+GL+H+S IS +   + +    + GD +  ++L  D ER R+SL  K+L
Sbjct: 377 FGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQL 436

Query: 505 EPTP 494
              P
Sbjct: 437 AEDP 440



 Score = 38.9 bits (89), Expect = 0.015
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = -1

Query: 676 GAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTK 512
           GA +++  G+ G L  S+ S DRV D + VL  GD ++      DR+   +SLS +
Sbjct: 465 GATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVR 520

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>RS1_ECOLI (P0AG67) 30S ribosomal protein S1|
          Length = 557

 Score = 63.5 bits (153), Expect = 6e-10
 Identities = 29/62 (46%), Positives = 42/62 (67%)
 Frame = -1

Query: 679 YGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEP 500
           YGAF+D+GG++GLLH++ ++  RV   S ++  GD + V +L  DRER RVSL  K+L  
Sbjct: 205 YGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGE 264

Query: 499 TP 494
            P
Sbjct: 265 DP 266



 Score = 46.2 bits (108), Expect = 9e-05
 Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
 Frame = -1

Query: 679 YGAFIDIG-GINGLLHVSQISH-DRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKL 506
           YG F++I  G+ GL+HVS++   ++    S V+  GD ++VM+L  D ER R+SL  K+ 
Sbjct: 290 YGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQC 349

Query: 505 EPTP 494
           +  P
Sbjct: 350 KANP 353



 Score = 42.0 bits (97), Expect = 0.002
 Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
 Frame = -1

Query: 679 YGAFIDI-GGINGLLHVSQISHDRVADIST-VLQPGDTLKVMILSHDRERGRVSLSTKKL 506
           +G FI + GGI+GL+H+S IS +   + +    + GD +  ++L  D ER R+SL  K+L
Sbjct: 377 FGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQL 436

Query: 505 EPTP 494
              P
Sbjct: 437 AEDP 440



 Score = 38.9 bits (89), Expect = 0.015
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = -1

Query: 676 GAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTK 512
           GA +++  G+ G L  S+ S DRV D + VL  GD ++      DR+   +SLS +
Sbjct: 465 GATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVR 520

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>RS1_ECOL6 (P0AG68) 30S ribosomal protein S1|
          Length = 557

 Score = 63.5 bits (153), Expect = 6e-10
 Identities = 29/62 (46%), Positives = 42/62 (67%)
 Frame = -1

Query: 679 YGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEP 500
           YGAF+D+GG++GLLH++ ++  RV   S ++  GD + V +L  DRER RVSL  K+L  
Sbjct: 205 YGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGE 264

Query: 499 TP 494
            P
Sbjct: 265 DP 266



 Score = 46.2 bits (108), Expect = 9e-05
 Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
 Frame = -1

Query: 679 YGAFIDIG-GINGLLHVSQISH-DRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKL 506
           YG F++I  G+ GL+HVS++   ++    S V+  GD ++VM+L  D ER R+SL  K+ 
Sbjct: 290 YGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQC 349

Query: 505 EPTP 494
           +  P
Sbjct: 350 KANP 353



 Score = 42.0 bits (97), Expect = 0.002
 Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
 Frame = -1

Query: 679 YGAFIDI-GGINGLLHVSQISHDRVADIST-VLQPGDTLKVMILSHDRERGRVSLSTKKL 506
           +G FI + GGI+GL+H+S IS +   + +    + GD +  ++L  D ER R+SL  K+L
Sbjct: 377 FGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQL 436

Query: 505 EPTP 494
              P
Sbjct: 437 AEDP 440



 Score = 38.9 bits (89), Expect = 0.015
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = -1

Query: 676 GAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTK 512
           GA +++  G+ G L  S+ S DRV D + VL  GD ++      DR+   +SLS +
Sbjct: 465 GATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVR 520

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>RS1_ECO57 (P0AG69) 30S ribosomal protein S1|
          Length = 557

 Score = 63.5 bits (153), Expect = 6e-10
 Identities = 29/62 (46%), Positives = 42/62 (67%)
 Frame = -1

Query: 679 YGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEP 500
           YGAF+D+GG++GLLH++ ++  RV   S ++  GD + V +L  DRER RVSL  K+L  
Sbjct: 205 YGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGE 264

Query: 499 TP 494
            P
Sbjct: 265 DP 266



 Score = 46.2 bits (108), Expect = 9e-05
 Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
 Frame = -1

Query: 679 YGAFIDIG-GINGLLHVSQISH-DRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKL 506
           YG F++I  G+ GL+HVS++   ++    S V+  GD ++VM+L  D ER R+SL  K+ 
Sbjct: 290 YGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQC 349

Query: 505 EPTP 494
           +  P
Sbjct: 350 KANP 353



 Score = 42.0 bits (97), Expect = 0.002
 Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
 Frame = -1

Query: 679 YGAFIDI-GGINGLLHVSQISHDRVADIST-VLQPGDTLKVMILSHDRERGRVSLSTKKL 506
           +G FI + GGI+GL+H+S IS +   + +    + GD +  ++L  D ER R+SL  K+L
Sbjct: 377 FGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQL 436

Query: 505 EPTP 494
              P
Sbjct: 437 AEDP 440



 Score = 38.9 bits (89), Expect = 0.015
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = -1

Query: 676 GAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTK 512
           GA +++  G+ G L  S+ S DRV D + VL  GD ++      DR+   +SLS +
Sbjct: 465 GATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVR 520

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>RS1_PROSP (P14128) 30S ribosomal protein S1 (Fragment)|
          Length = 378

 Score = 63.5 bits (153), Expect = 6e-10
 Identities = 29/62 (46%), Positives = 42/62 (67%)
 Frame = -1

Query: 679 YGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEP 500
           YGAF+D+GG++GLLH++ ++  RV   S ++  GD + V +L  DRER RVSL  K+L  
Sbjct: 100 YGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGE 159

Query: 499 TP 494
            P
Sbjct: 160 DP 161



 Score = 46.2 bits (108), Expect = 9e-05
 Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
 Frame = -1

Query: 679 YGAFIDIG-GINGLLHVSQISH-DRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKL 506
           YG F++I  G+ GL+HVS++   ++    S V+  GD ++VM+L  D ER R+SL  K+ 
Sbjct: 185 YGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQC 244

Query: 505 EPTP 494
           +  P
Sbjct: 245 KSNP 248



 Score = 42.0 bits (97), Expect = 0.002
 Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
 Frame = -1

Query: 679 YGAFIDI-GGINGLLHVSQISHDRVADIST-VLQPGDTLKVMILSHDRERGRVSLSTKKL 506
           +G FI + GGI+GL+H+S IS +   + +    + GD +  ++L  D ER R+SL  K+L
Sbjct: 272 FGIFIGLEGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQL 331

Query: 505 EPTP 494
              P
Sbjct: 332 AEDP 335

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>RS1_RICPR (Q9ZD28) 30S ribosomal protein S1|
          Length = 568

 Score = 62.4 bits (150), Expect = 1e-09
 Identities = 30/67 (44%), Positives = 44/67 (65%)
 Frame = -1

Query: 679 YGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEP 500
           YGAFID+G ++GLLH++ IS  RV   S VL+    +KVM++  D +  R+SL  K+L+ 
Sbjct: 218 YGAFIDLGSVDGLLHLTDISWGRVNHPSEVLEFNQKVKVMVIKFDEKTKRISLGIKQLDS 277

Query: 499 TPGDMIR 479
            P D I+
Sbjct: 278 NPWDAIK 284



 Score = 36.2 bits (82), Expect = 0.095
 Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
 Frame = -1

Query: 679 YGAFIDIGG-INGLLHVSQIS-HDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKL 506
           +G F+ +G  ++G++H   IS  D   D+    + GD ++  +L+ + E+ +VSL  K+L
Sbjct: 390 FGIFVVLGNNMDGMIHEGDISWEDNGTDLLKSYKKGDEIECKVLAINFEKEQVSLGIKQL 449

Query: 505 EPTP 494
            P P
Sbjct: 450 LPNP 453

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>RS1_STAHJ (Q4L6I1) 30S ribosomal protein S1|
          Length = 392

 Score = 62.0 bits (149), Expect = 2e-09
 Identities = 28/67 (41%), Positives = 45/67 (67%)
 Frame = -1

Query: 679 YGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEP 500
           +GAF+DIGG++GL+HVS++SH+ V     V+  G  + V + S +++  R+SLS K   P
Sbjct: 207 FGAFVDIGGVDGLVHVSELSHEHVDSPEDVVSVGQEVDVKVKSVEKDAERISLSIKDTLP 266

Query: 499 TPGDMIR 479
           TP + I+
Sbjct: 267 TPFESIK 273



 Score = 53.1 bits (126), Expect = 7e-07
 Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
 Frame = -1

Query: 679 YGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLE 503
           +GAF++I  G+ GL+H+S+I+H+ +      L+PG  + V IL  D E  R+SLS K   
Sbjct: 292 FGAFVEIAPGVQGLVHISEIAHEHIGTPGEKLEPGQQVNVKILGIDEENERISLSIKATL 351

Query: 502 P 500
           P
Sbjct: 352 P 352



 Score = 30.0 bits (66), Expect = 6.8
 Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
 Frame = -1

Query: 667 IDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMI----LSHDRERGRVSLSTKKLE 503
           I+ G  NG++ +SQ+S   + + S V++ GD ++  +    +  + + G   LS ++LE
Sbjct: 35  INGGKFNGIIPISQLSTHHIENPSEVVKQGDEIEAYVTKIEVDEENDSGVYILSKRQLE 93

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>RS1_RHIME (P14129) 30S ribosomal protein S1|
          Length = 568

 Score = 61.2 bits (147), Expect = 3e-09
 Identities = 31/66 (46%), Positives = 44/66 (66%)
 Frame = -1

Query: 679 YGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEP 500
           YGAF+D+GGI+GLLHV+ ++  RV   S +L  G  +KV I+  ++E  R+SL  K+LE 
Sbjct: 211 YGAFVDLGGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQIIRINQETHRISLGMKQLES 270

Query: 499 TPGDMI 482
            P D I
Sbjct: 271 DPWDGI 276



 Score = 35.4 bits (80), Expect = 0.16
 Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = -1

Query: 679 YGAFIDIG-GINGLLHVSQISHDRV-ADISTVLQPGDTLKVMILSHDRERGRVSLSTKKL 506
           YGAF+++  GI GL+H+S++S  +       +L     + V++L  D  + R+SL  K+ 
Sbjct: 296 YGAFVELEPGIEGLIHISEMSWTKKNVHPGKILSTSQEVDVVVLEVDPTKRRISLGLKQT 355

Query: 505 EPTP 494
              P
Sbjct: 356 LENP 359



 Score = 35.0 bits (79), Expect = 0.21
 Identities = 17/60 (28%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
 Frame = -1

Query: 679 YGAFIDIGG-INGLLHVSQISHDRVAD-ISTVLQPGDTLKVMILSHDRERGRVSLSTKKL 506
           +G FI + G ++G++H+S +  +R  + +      GD ++ ++L  D ++ R+SL  K+L
Sbjct: 383 FGLFIGLDGDVDGMVHLSDLDWNRPGEQVIEEFNKGDVVRAVVLDVDVDKERISLGIKQL 442

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>RS1_HAEIN (Q48082) 30S ribosomal protein S1|
          Length = 549

 Score = 60.8 bits (146), Expect = 4e-09
 Identities = 27/62 (43%), Positives = 42/62 (67%)
 Frame = -1

Query: 679 YGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEP 500
           YGAF+D+GG++GLLH++ ++  RV   S ++  GD + V +L  D++R RVSL  K+L  
Sbjct: 205 YGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQ 264

Query: 499 TP 494
            P
Sbjct: 265 DP 266



 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
 Frame = -1

Query: 679 YGAFIDI-GGINGLLHVSQISH-DRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKL 506
           YG F++I  G+ GL+HVS++   ++    S V+  GDT++VM+L  D ER R+SL  K+ 
Sbjct: 290 YGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQC 349

Query: 505 EPTP 494
           +  P
Sbjct: 350 KANP 353



 Score = 39.7 bits (91), Expect = 0.009
 Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
 Frame = -1

Query: 679 YGAFIDI-GGINGLLHVSQISHDRVADISTVLQ--PGDTLKVMILSHDRERGRVSLSTKK 509
           +G FI + GGI+GL+H+S IS   ++    V Q   GD +  ++L+ D  + R+SL  K+
Sbjct: 377 FGIFIGLEGGIDGLVHLSDISWS-ISGEEAVRQYKKGDEVSAVVLAVDAVKERISLGIKQ 435

Query: 508 LEPTP 494
           LE  P
Sbjct: 436 LEEDP 440

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>RS1_MYCTU (O06147) 30S ribosomal protein S1|
          Length = 481

 Score = 59.7 bits (143), Expect = 8e-09
 Identities = 28/62 (45%), Positives = 42/62 (67%)
 Frame = -1

Query: 679 YGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEP 500
           +GAF+D+GG++GL+HVS++S   +   S V+Q GD + V +L  D +R RVSLS K  + 
Sbjct: 222 FGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQE 281

Query: 499 TP 494
            P
Sbjct: 282 DP 283



 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
 Frame = -1

Query: 682 PYGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKK 509
           P+GAF+ +  GI GL+H+S+++   V     V+  GD   V ++  D ER R+SLS K+
Sbjct: 306 PFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQ 364

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>RS1_RHOPA (Q6NDP1) 30S ribosomal protein S1 (RRP-S1)|
          Length = 565

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 30/62 (48%), Positives = 41/62 (66%)
 Frame = -1

Query: 679 YGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEP 500
           YGAF+D+GGI+GLLHV+ I+  RV   + VL  G T+KV I+  + E  R+SL  K+L  
Sbjct: 214 YGAFVDLGGIDGLLHVTDIAWRRVNHPTEVLTIGQTVKVKIIKINHETHRISLGMKQLLD 273

Query: 499 TP 494
            P
Sbjct: 274 DP 275



 Score = 35.4 bits (80), Expect = 0.16
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
 Frame = -1

Query: 679 YGAFIDIG-GINGLLHVSQISHDRV-ADISTVLQPGDTLKVMILSHDRERGRVSLSTKKL 506
           YGAF+++  GI GL+HVS++S  +       ++     ++V +L  D  + R+SL  K+ 
Sbjct: 299 YGAFVELEPGIEGLIHVSEMSWTKKNMHPGKIVSTSQEVEVQVLEVDSVKRRISLGLKQ- 357

Query: 505 EPTPGDMIRNPKLVF 461
                  +RNP  VF
Sbjct: 358 ------TMRNPWEVF 366

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>ISPH_CLOTE (Q895G2) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC|
           1.17.1.2)
          Length = 635

 Score = 57.8 bits (138), Expect = 3e-08
 Identities = 28/62 (45%), Positives = 43/62 (69%)
 Frame = -1

Query: 679 YGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEP 500
           +GAF++I G++GLLHVS+IS  RV   S +L+ GD +KV I   D+++ +++LS K L  
Sbjct: 489 FGAFVNINGVDGLLHVSEISWGRVEKPSDMLKVGDKIKVYIKDIDKDKKKLALSIKDLTK 548

Query: 499 TP 494
            P
Sbjct: 549 DP 550



 Score = 49.7 bits (117), Expect = 8e-06
 Identities = 23/59 (38%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
 Frame = -1

Query: 679 YGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKL 506
           +GAF+++  G++GL+H+SQISH RV  +   L  G+ +K  I+  D E+ ++ LS K++
Sbjct: 574 FGAFVELEPGVDGLIHISQISHKRVDRVEDELSIGEQVKAKIVEVDGEKRKIGLSIKEV 632

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>RS1_MYCLE (P46836) 30S ribosomal protein S1|
          Length = 481

 Score = 57.8 bits (138), Expect = 3e-08
 Identities = 27/62 (43%), Positives = 42/62 (67%)
 Frame = -1

Query: 679 YGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEP 500
           +GAF+D+GG++GL+HVS++S   +   S V+Q G+ + V +L  D +R RVSLS K  + 
Sbjct: 222 FGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQVGNEVTVEVLDVDMDRERVSLSLKATQE 281

Query: 499 TP 494
            P
Sbjct: 282 DP 283



 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
 Frame = -1

Query: 682 PYGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKK 509
           P+GAF+ +  GI GL+H+S+++   V     V+  GD   V ++  D ER R+SLS K+
Sbjct: 306 PFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQ 364

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>RR1_PORPU (P51345) Chloroplast 30S ribosomal protein S1|
          Length = 263

 Score = 56.6 bits (135), Expect = 7e-08
 Identities = 26/60 (43%), Positives = 42/60 (70%)
 Frame = -1

Query: 682 PYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLE 503
           PYG FI  G + GL+H+S+I+  +V  I +  + GDT+K +I+  D+++GR+SLS K L+
Sbjct: 204 PYGLFIKAGNLKGLVHISEINVKQVERIPSQFKIGDTIKAVIIHVDKKQGRLSLSMKHLK 263

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>RS1_CHLMU (P38016) 30S ribosomal protein S1 (70 kDa antigen)|
          Length = 570

 Score = 56.6 bits (135), Expect = 7e-08
 Identities = 30/69 (43%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
 Frame = -1

Query: 682 PYGAFIDIG-GINGLLHVSQISH-DRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKK 509
           PYGAFI+I  GI GL+HVS++S    + D + V+  GD ++V++LS  ++ G++SL  K+
Sbjct: 317 PYGAFIEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQ 376

Query: 508 LEPTPGDMI 482
            E  P D I
Sbjct: 377 TEHNPWDNI 385



 Score = 56.2 bits (134), Expect = 9e-08
 Identities = 26/66 (39%), Positives = 45/66 (68%)
 Frame = -1

Query: 679 YGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEP 500
           +G F+D+ GI+GLLH++ ++  R+   S +++    L+V+ILS D+E+GRV+L  K+ E 
Sbjct: 233 FGVFLDLDGIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVALGLKQKEH 292

Query: 499 TPGDMI 482
            P + I
Sbjct: 293 NPWEDI 298



 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 27/68 (39%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
 Frame = -1

Query: 679 YGAFIDIG-GINGLLHVSQISH-DRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKL 506
           YGAF+++  GI GL+H+S +S   +V+  S + + G+T++ +ILS D+E  +++L  K+L
Sbjct: 405 YGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQL 464

Query: 505 EPTPGDMI 482
            P P D I
Sbjct: 465 TPNPWDEI 472



 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
 Frame = -1

Query: 679 YGAFIDI-GGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKK 509
           +GAF+++  GI GL+HVS++S    A I  +L  GD +   ++  D +  +VSLS K+
Sbjct: 492 FGAFVELQNGIEGLIHVSKLSDKPFAKIEDILSIGDKVSAKVIKLDPDHKKVSLSIKE 549

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>RS1_CHLTR (O84100) 30S ribosomal protein S1|
          Length = 569

 Score = 56.2 bits (134), Expect = 9e-08
 Identities = 26/66 (39%), Positives = 45/66 (68%)
 Frame = -1

Query: 679 YGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEP 500
           +G F+D+ GI+GLLH++ ++  R+   S +++    L+V+ILS D+E+GRV+L  K+ E 
Sbjct: 233 FGVFLDLDGIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVALGLKQKEH 292

Query: 499 TPGDMI 482
            P + I
Sbjct: 293 NPWEDI 298



 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
 Frame = -1

Query: 682 PYGAFIDIG-GINGLLHVSQISH-DRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKK 509
           PYGAFI+I  GI GL+HVS++S    + D + V+  GD ++V++LS  ++ G++SL  K+
Sbjct: 317 PYGAFIEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQ 376

Query: 508 LEPTPGDMI 482
            +  P D I
Sbjct: 377 TKHNPWDNI 385



 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 27/68 (39%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
 Frame = -1

Query: 679 YGAFIDIG-GINGLLHVSQISH-DRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKL 506
           YGAF+++  GI GL+H+S +S   +V+  S + + G+T++ +ILS D+E  +++L  K+L
Sbjct: 405 YGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQL 464

Query: 505 EPTPGDMI 482
            P P D I
Sbjct: 465 TPNPWDEI 472



 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
 Frame = -1

Query: 679 YGAFIDI-GGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLE 503
           +GAF+++  GI GL+HVS++S    A I  VL  GD +   ++  D +  +VSLS K+  
Sbjct: 492 FGAFVELQNGIEGLIHVSELSEKPFAKIEDVLSIGDKVSAKVIKLDPDHKKVSLSIKEFL 551

Query: 502 PTPGD 488
              GD
Sbjct: 552 VHGGD 556

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>RS1_CHLPN (Q9Z8M3) 30S ribosomal protein S1|
          Length = 580

 Score = 56.2 bits (134), Expect = 9e-08
 Identities = 26/66 (39%), Positives = 45/66 (68%)
 Frame = -1

Query: 679 YGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEP 500
           +G F+D+ GI+GLLH++ ++  R+   S +++    L+V+ILS D+E+GRV+L  K+ E 
Sbjct: 233 FGVFLDLDGIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVALGLKQKEH 292

Query: 499 TPGDMI 482
            P + I
Sbjct: 293 NPWEDI 298



 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
 Frame = -1

Query: 682 PYGAFIDIG-GINGLLHVSQISH-DRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKK 509
           PYGAFI+I  GI GL+H+S++S    + D S V+  GD ++ ++LS  ++ G++SL  K+
Sbjct: 317 PYGAFIEIEEGIEGLIHISEMSWVKNIVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQ 376

Query: 508 LEPTPGDMI 482
            E  P D I
Sbjct: 377 TERNPWDNI 385



 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 24/68 (35%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
 Frame = -1

Query: 679 YGAFIDIG-GINGLLHVSQISH-DRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKL 506
           YGAF+++  GI GL+H+S +S   +V+  S + + G++++ +ILS D+E  +++L  K+L
Sbjct: 405 YGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNSVEAVILSVDKESKKITLGVKQL 464

Query: 505 EPTPGDMI 482
              P + I
Sbjct: 465 SSNPWNEI 472



 Score = 43.5 bits (101), Expect = 6e-04
 Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
 Frame = -1

Query: 679 YGAFIDI-GGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKK 509
           +GAF+++  GI GL+HVS++S    A I  ++  G+ +   ++  D +  +VSLS K+
Sbjct: 492 FGAFVELQNGIEGLIHVSELSDKPFAKIEDIISIGENVSAKVIKLDPDHKKVSLSVKE 549

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>GS13_BACSU (P80870) General stress protein 13 (GSP13)|
          Length = 129

 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
 Frame = -1

Query: 679 YGAFIDIGG-INGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLE 503
           YGAF+ +     GL+H+S+++H  V DI+  L  GD ++V +L+ D E+G++SLS +  +
Sbjct: 20  YGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGKISLSIRATQ 79

Query: 502 PTPGDMIRNPK 470
             P      P+
Sbjct: 80  AAPEKKESKPR 90

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>ISPH_FUSNN (Q8RI52) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC|
           1.17.1.2)
          Length = 827

 Score = 50.4 bits (119), Expect = 5e-06
 Identities = 27/82 (32%), Positives = 45/82 (54%)
 Frame = -1

Query: 679 YGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEP 500
           +G  +DI  + G +H+S++S  R+  +S   + GD +K +++S D  +  V LS KKLE 
Sbjct: 490 FGLAVDINTLKGFIHISEVSWKRLDKLSDNYKVGDKIKAVVVSLDEAKRNVKLSIKKLEE 549

Query: 499 TPGDMIRNPKLVFEKADEMAQI 434
            P   + N    F+  DE+  I
Sbjct: 550 DPWATVANE---FKVDDEIEGI 568



 Score = 35.8 bits (81), Expect = 0.12
 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
 Frame = -1

Query: 679 YGAFID-IGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLE 503
           +G FI+ I GI+G +     S + + +I      GD +K  ++  ++E  ++ LS KK+E
Sbjct: 746 FGLFIELIKGIDGFIPTQFASKEFIKNIRDKFSEGDVVKAQVVEVNKETQKIKLSIKKIE 805

Query: 502 PTPGDMIRNPKLVFEKADEMAQIFRQRIAQAE 407
                      +  EK +E  QI +   + +E
Sbjct: 806 -----------IEEEKREEREQIEKYSTSSSE 826

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>RS1_HELPY (P56008) 30S ribosomal protein S1|
          Length = 556

 Score = 49.3 bits (116), Expect = 1e-05
 Identities = 24/69 (34%), Positives = 40/69 (57%)
 Frame = -1

Query: 682 PYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLE 503
           P+G F++  GI GL+H S+ISH    +     + GD + V  +++D E+ R+SLS K   
Sbjct: 216 PFGIFVEAKGIEGLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDAEKRRLSLSIKATI 275

Query: 502 PTPGDMIRN 476
             P + I++
Sbjct: 276 EDPWEEIQD 284



 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 22/62 (35%), Positives = 37/62 (59%)
 Frame = -1

Query: 679 YGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEP 500
           +GAF+++GG++GLLH      D+        + GD +KV IL  +++  ++SLS K L  
Sbjct: 389 FGAFLNLGGVDGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKINKKDKKISLSAKHLVT 448

Query: 499 TP 494
           +P
Sbjct: 449 SP 450

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>RS1_HELPJ (Q9ZKF6) 30S ribosomal protein S1|
          Length = 552

 Score = 49.3 bits (116), Expect = 1e-05
 Identities = 24/69 (34%), Positives = 40/69 (57%)
 Frame = -1

Query: 682 PYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLE 503
           P+G F+   GI+GL+H S+ISH    +     + GD + V  +++D E+ R+SLS K   
Sbjct: 212 PFGIFVKFKGIDGLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDEEKRRLSLSIKATI 271

Query: 502 PTPGDMIRN 476
             P + I++
Sbjct: 272 EDPWEEIQD 280



 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 22/62 (35%), Positives = 37/62 (59%)
 Frame = -1

Query: 679 YGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEP 500
           +GAF+++GG++GLLH      D+        + GD +KV IL  +++  ++SLS K L  
Sbjct: 385 FGAFLNLGGVDGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKINKKDKKISLSAKHLVT 444

Query: 499 TP 494
           +P
Sbjct: 445 SP 446

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>MOG5_CAEEL (Q09530) Probable pre-mRNA-splicing factor ATP-dependent RNA|
           helicase mog-5 (EC 3.6.1.-) (Sex determination protein
           mog-5) (Masculinization of germ line protein 5)
          Length = 1200

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 27/74 (36%), Positives = 48/74 (64%), Gaps = 4/74 (5%)
 Frame = -1

Query: 679 YGAFIDIGGIN----GLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTK 512
           +GAFI + G      GL+H+SQI ++RV  ++ VL+ G+ +KV +  +  E G++SLS K
Sbjct: 247 FGAFITLEGFRQKQEGLVHISQIRNERVQTVADVLKRGENVKVKV--NKIENGKISLSMK 304

Query: 511 KLEPTPGDMIRNPK 470
           +++   G+ + NP+
Sbjct: 305 EVDQNSGEDL-NPR 317

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>YHGF_NEIMB (Q51152) Hypothetical protein NMB0075|
          Length = 757

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 27/64 (42%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
 Frame = -1

Query: 679 YGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLE 503
           +GAF+DIG   +GL+H+S +S+  V D   V++ GD +KV +L  D  R R++L T +L+
Sbjct: 653 FGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAGDVVKVKVLEVDAARKRIAL-TMRLD 711

Query: 502 PTPG 491
             PG
Sbjct: 712 DEPG 715

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>YHGF_NEIMA (P57072) Hypothetical protein NMA0194|
          Length = 757

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 27/64 (42%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
 Frame = -1

Query: 679 YGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLE 503
           +GAF+DIG   +GL+H+S +S+  V D   V++ GD +KV +L  D  R R++L T +L+
Sbjct: 653 FGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAGDVVKVKVLEVDAARKRIAL-TMRLD 711

Query: 502 PTPG 491
             PG
Sbjct: 712 DEPG 715

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>PNP_HAEIN (P44584) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 709

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
 Frame = -1

Query: 679 YGAFIDI-GGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLE 503
           +GAF+ I G   GL+H+SQI+ +RV  +S  LQ G  + V ++  DR+ GR+ L+ K L 
Sbjct: 634 FGAFVAIVGNKEGLVHISQIAEERVEKVSDYLQVGQEVNVKVVEIDRQ-GRIRLTMKDLA 692

Query: 502 P 500
           P
Sbjct: 693 P 693

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>PNP_BUCAP (Q8K9H5) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 707

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 28/60 (46%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
 Frame = -1

Query: 679 YGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLE 503
           +GAFI IG G  GL+H+SQIS+ RV  +S  L     + V +L  DR+ GR+ LS K++E
Sbjct: 635 FGAFISIGIGKEGLVHISQISNKRVEKVSDHLTVDQIISVKVLEIDRQ-GRLRLSIKEVE 693

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>PNP_PHOLU (P41121) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase) (CAP87K)
          Length = 709

 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 30/67 (44%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
 Frame = -1

Query: 679 YGAFIDIGG-INGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLE 503
           +GAF+ IGG   GL+H+SQI+  RV  ++  LQ G    V +L  DR+ GRV LS K  E
Sbjct: 635 FGAFVAIGGGKEGLVHISQIADKRVEKVADYLQVGQETSVKVLEIDRQ-GRVRLSIK--E 691

Query: 502 PTPGDMI 482
            T G  +
Sbjct: 692 ATAGTAV 698

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>PNP_ECOLI (P05055) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 711

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
 Frame = -1

Query: 679 YGAFIDIGG-INGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKK 509
           +GAF+ IGG   GL+H+SQI+  RV  ++  LQ G  + V +L  DR+ GR+ LS K+
Sbjct: 635 FGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKE 691

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>PNP_BUCAI (P57454) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 707

 Score = 46.2 bits (108), Expect = 9e-05
 Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
 Frame = -1

Query: 679 YGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLE 503
           +GAF+ IG G  GL+H+SQIS  RV  +S  L+    + V +L  DR+ GR+ LS K+++
Sbjct: 635 FGAFVSIGLGKEGLVHISQISDKRVDKVSNHLKIDQIISVKVLEIDRQ-GRLRLSIKEID 693

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>PNP_YEREN (O34275) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 706

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
 Frame = -1

Query: 679 YGAFIDIGG-INGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKK 509
           +GAF+ IGG   GL+H+SQI+  RV  ++  LQ G  + V ++  DR+ GR+ LS K+
Sbjct: 635 FGAFVAIGGGKEGLVHISQIADKRVDKVTDYLQMGQEVPVKVIEVDRQ-GRIRLSMKE 691

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>PNP_BUCBP (Q89AF8) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 693

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
 Frame = -1

Query: 679 YGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTK 512
           +GAF+ IG G  GL+H+SQI+H RV  +S  L+    + V +L  DR+ GR+ LS K
Sbjct: 635 FGAFVSIGIGKEGLVHISQIAHKRVDKVSDHLRLHQEIFVKVLEVDRQ-GRLRLSIK 690

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>IF2A_PYRKO (Q5JE49) Translation initiation factor 2 alpha subunit|
           (eIF-2-alpha) (aIF2-alpha)
          Length = 275

 Score = 40.4 bits (93), Expect = 0.005
 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
 Frame = -1

Query: 682 PYGAFIDIG---GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTK 512
           PYGAF+ +    G  G +H+S+++   V +I   L+ G  +   ++  D E+G + LS K
Sbjct: 24  PYGAFLTLDEYPGKEGFMHISEVAPTWVKNIRDYLKEGQKIVAKVIRVDPEKGHIDLSLK 83

Query: 511 KL 506
           ++
Sbjct: 84  RV 85

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>RRP5_YEAST (Q05022) rRNA biogenesis protein RRP5|
          Length = 1729

 Score = 38.5 bits (88), Expect = 0.019
 Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
 Frame = -1

Query: 679  YGAFIDIGG---INGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTK 512
            +G F+ +     + GL H+++I+  +  D+S +   GD +K ++L  + E+ ++SLS K
Sbjct: 1278 FGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKKQISLSLK 1336

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>RPOE_SULAC (P39466) DNA-directed RNA polymerase subunit E (EC 2.7.7.6)|
          Length = 183

 Score = 38.1 bits (87), Expect = 0.025
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 11/62 (17%)
 Frame = -1

Query: 679 YGAFIDIGGINGLLHVSQISHDRVADIST-----------VLQPGDTLKVMILSHDRERG 533
           YG ++++G ++GL+H+SQI+ D +   S             +Q GD ++ MI+S     G
Sbjct: 95  YGVYVNMGPVDGLVHISQITDDNLKFDSNRGILIGEKSKKSIQKGDRVRAMIISASMSSG 154

Query: 532 RV 527
           R+
Sbjct: 155 RL 156

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>IF2A_AERPE (Q9YF02) Translation initiation factor 2 alpha subunit|
           (eIF-2-alpha) (aIF2-alpha)
          Length = 277

 Score = 37.0 bits (84), Expect = 0.056
 Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
 Frame = -1

Query: 679 YGAFI---DIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKK 509
           YGA++   + GG+   L  S+I+   V +I  VL+P   + V ++   ++RG+V +S K+
Sbjct: 35  YGAYLILDEYGGVRAFLPWSEIASRAVRNIHAVLKPRQKVVVKVIRVYKKRGQVDVSLKR 94

Query: 508 LEPTPGDMIRNPKLVFEKADEMAQIFRQRIAQ 413
           +     D  +  K++F K    A    + IA+
Sbjct: 95  VM----DSEKKRKMMFYKRYLKAATLVELIAE 122

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>RPOE1_METJA (Q57840) DNA-directed RNA polymerase subunit E' (EC 2.7.7.6)|
          Length = 187

 Score = 34.7 bits (78), Expect = 0.28
 Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 16/73 (21%)
 Frame = -1

Query: 679 YGAFIDIGGINGLLHVSQISHDRVA-----------DISTVLQPGDTLKVMI----LSHD 545
           +G+F+ +G ++GL+HVSQI  D V+           +   VL+ GD ++  I    L  +
Sbjct: 95  FGSFVRLGPLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAE 154

Query: 544 RERG-RVSLSTKK 509
           R+RG +++L+ ++
Sbjct: 155 RKRGSKIALTMRQ 167

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>IF2A_ARCFU (O29723) Translation initiation factor 2 alpha subunit|
           (eIF-2-alpha) (aIF2-alpha)
          Length = 267

 Score = 33.9 bits (76), Expect = 0.47
 Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
 Frame = -1

Query: 679 YGAFIDIG---GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTK 512
           +GAF+ +    G  G++H+S+++   + DI   ++ G  +   +L  + +RG + LS K
Sbjct: 30  FGAFVSLDEYEGREGMVHISEVASGWIKDIREHVKKGQKVICKVLDVNPKRGHIDLSIK 88

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>PCCA_CAEBR (Q612F5) Propionyl-CoA carboxylase alpha chain, mitochondrial|
           precursor (EC 6.4.1.3) (PCCase alpha subunit)
           (Propanoyl-CoA:carbon dioxide ligase alpha subunit)
          Length = 738

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 27/82 (32%), Positives = 34/82 (41%), Gaps = 20/82 (24%)
 Frame = -1

Query: 676 GAFIDIGG------------INGLLHVSQISHDRVADISTVLQPGDTLKVMILSHD---- 545
           G  IDI G            +NG    +QI   R  +I TVL  G   KV +L       
Sbjct: 598 GKVIDISGNLSLSLPVNSIEVNGEHITTQIVGKRAGEI-TVLYKGTPFKVQVLPEQAVKY 656

Query: 544 ----RERGRVSLSTKKLEPTPG 491
               +E+ +V LST  L P PG
Sbjct: 657 LQYMKEKAKVDLSTVVLSPMPG 678

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>CHS1_RHIRA (Q12632) Chitin synthase 1 (EC 2.4.1.16) (Chitin-UDP|
           acetyl-glucosaminyl transferase 1) (Class-II chitin
           synthase 1)
          Length = 852

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
 Frame = +2

Query: 56  HTLFCTKWIDGFTKGIQLEYLFGRFSAPYASYTMIQAQVDDGEL--------SEYDMVMS 211
           + LFC+ W+    KGIQL     ++   Y + T  Q  + D  L        S Y + + 
Sbjct: 616 YMLFCSSWL--IYKGIQLAA--EKYDWTYDTTTNFQIAMSDPGLRNMVISLSSTYGIYLV 671

Query: 212 SSCIHKQ 232
           SSC+H+Q
Sbjct: 672 SSCLHRQ 678

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>DCR1C_BRARE (Q5RGE5) Artemis protein (EC 3.1.-.-) (DNA cross-link repair 1C|
           protein)
          Length = 639

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
 Frame = -1

Query: 637 HVSQISHDRVADISTVLQPGDTLKVMILSHDRER-------GRVSLSTKKLEPTPGDMIR 479
           H+S    + ++ + T++   D  K   L H  E         +VS S  +L PTPG  + 
Sbjct: 557 HISDAGTESLSQVDTIMVQEDHSKACNLQHKTEEAAELKSDSQVS-SDFELPPTPGSKVP 615

Query: 478 NPKLVFEKADEMAQIFRQRIAQAEAMAR 395
            P       +++ +++R+  A  + +AR
Sbjct: 616 QP-------EDLKELYRKLAAGEDVVAR 636

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>GLYA1_BURTA (Q2SYS4) Serine hydroxymethyltransferase 1 (EC 2.1.2.1) (Serine|
           methylase 1) (SHMT 1)
          Length = 415

 Score = 29.6 bits (65), Expect = 8.9
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = -1

Query: 592 VLQPGDTLKVMILSHD---RERGRVSLSTKKLEPTPGDMIRNPKLVFEKADEMAQIFRQR 422
           +L+PGDT+  M L+H         V++S K        +  N  + +E AD++A   + +
Sbjct: 110 MLKPGDTIMGMSLAHGGHLTHGSPVNMSGKWFNVVSYGLNENEDIDYEAADKLAHEHKPK 169

Query: 421 IAQAEAMARADMLRFQ 374
           +  A A A A  + F+
Sbjct: 170 LIVAGASAFALKIDFE 185

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>Y830_CORDI (Q6NIE7) Hypothetical transport protein DIP0830|
          Length = 541

 Score = 29.6 bits (65), Expect = 8.9
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = -1

Query: 652 INGLL--HVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSL 521
           ++G+L   V +  HD VA   TVLQ GD ++V + +HDR +   +L
Sbjct: 307 LSGILITRVRRGDHDHVATPETVLQLGDRVRV-VAAHDRMKSVTAL 351


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,749,895
Number of Sequences: 219361
Number of extensions: 2089405
Number of successful extensions: 5581
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 5371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5578
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6712189044
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result