ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags17b06 |
|---|---|
| Clone Library Name | barley_pub |
>SEL9_CAEEL (O17528) Suppressor/enhancer of lin-12 protein 9 precursor| Length = 203 Score = 45.4 bits (106), Expect = 8e-05 Identities = 25/78 (32%), Positives = 44/78 (56%) Frame = -2 Query: 439 DQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFESA 260 +Q A D + L E + +L AL +++ EQ ++E + +NEN + R + A FE+ Sbjct: 123 NQDAADN--AKLEEMVRELSSALMSVKHEQEYMEVRERVHRNINENTNSRVVMWAAFEAF 180 Query: 259 ALITASVIQVYLLRRLFE 206 L+ +V Q++ L+R FE Sbjct: 181 VLVGMTVGQIFYLKRFFE 198
>TMED2_RAT (Q63524) Transmembrane emp24 domain trafficking protein 2 precursor| (Membrane protein p24A) (RNP21.4) Length = 201 Score = 45.1 bits (105), Expect = 1e-04 Identities = 23/89 (25%), Positives = 45/89 (50%) Frame = -2 Query: 472 FDVHVGHYSYFDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSR 293 F + +G + H + L E I +L A+ ++ EQ ++E + +N+N + Sbjct: 108 FTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNS 167 Query: 292 RAIHKALFESAALITASVIQVYLLRRLFE 206 R + + FE+ L+ ++ Q+Y L+R FE Sbjct: 168 RVVLWSFFEALVLVAMTLGQIYYLKRFFE 196
>TMED2_MOUSE (Q9R0Q3) Transmembrane emp24 domain trafficking protein 2 precursor| (Membrane protein p24A) (Sid 394) Length = 201 Score = 45.1 bits (105), Expect = 1e-04 Identities = 23/89 (25%), Positives = 45/89 (50%) Frame = -2 Query: 472 FDVHVGHYSYFDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSR 293 F + +G + H + L E I +L A+ ++ EQ ++E + +N+N + Sbjct: 108 FTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNS 167 Query: 292 RAIHKALFESAALITASVIQVYLLRRLFE 206 R + + FE+ L+ ++ Q+Y L+R FE Sbjct: 168 RVVLWSFFEALVLVAMTLGQIYYLKRFFE 196
>TMED2_HUMAN (Q15363) Transmembrane emp24 domain trafficking protein 2 precursor| (Membrane protein p24A) Length = 201 Score = 45.1 bits (105), Expect = 1e-04 Identities = 23/89 (25%), Positives = 45/89 (50%) Frame = -2 Query: 472 FDVHVGHYSYFDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSR 293 F + +G + H + L E I +L A+ ++ EQ ++E + +N+N + Sbjct: 108 FTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNS 167 Query: 292 RAIHKALFESAALITASVIQVYLLRRLFE 206 R + + FE+ L+ ++ Q+Y L+R FE Sbjct: 168 RVVLWSFFEALVLVAMTLGQIYYLKRFFE 196
>TMED2_CRIGR (P49020) Transmembrane emp24 domain trafficking protein 2 precursor| (COPI-coated vesicle membrane protein p24) (Fragment) Length = 196 Score = 45.1 bits (105), Expect = 1e-04 Identities = 23/89 (25%), Positives = 45/89 (50%) Frame = -2 Query: 472 FDVHVGHYSYFDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSR 293 F + +G + H + L E I +L A+ ++ EQ ++E + +N+N + Sbjct: 103 FTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNS 162 Query: 292 RAIHKALFESAALITASVIQVYLLRRLFE 206 R + + FE+ L+ ++ Q+Y L+R FE Sbjct: 163 RVVLWSFFEALVLVAMTLGQIYYLKRFFE 191
>TMEDA_PONPY (Q5RE32) Transmembrane emp24 domain-containing protein 10 precursor| (Transmembrane protein Tmp21) (21 kDa transmembrane trafficking protein) Length = 219 Score = 40.0 bits (92), Expect = 0.003 Identities = 21/81 (25%), Positives = 44/81 (54%) Frame = -2 Query: 442 FDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFES 263 +++ AK E PL ++ +L++ +I + ++E + + NE+ + R ++ ++F Sbjct: 135 YEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMEKREEEMRDTNESTNTRVLYFSIFSM 194 Query: 262 AALITASVIQVYLLRRLFERK 200 LI + QV+ LRR F+ K Sbjct: 195 FCLIGLATWQVFYLRRFFKAK 215
>TMEDA_MESAU (O35587) Transmembrane protein Tmp21 precursor (21 kDa| transmembrane trafficking protein) (Integral membrane protein p23) Length = 219 Score = 38.9 bits (89), Expect = 0.007 Identities = 20/81 (24%), Positives = 44/81 (54%) Frame = -2 Query: 442 FDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFES 263 +++ AK E PL ++ +L++ +I + +++ + + NE+ + R ++ ++F Sbjct: 135 YEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSM 194 Query: 262 AALITASVIQVYLLRRLFERK 200 LI + QV+ LRR F+ K Sbjct: 195 LCLIGLATWQVFYLRRFFKAK 215
>TMEDA_RAT (Q63584) Transmembrane emp24 domain-containing protein 10 precursor| (Transmembrane protein Tmp21) (21 kDa transmembrane trafficking protein) Length = 219 Score = 38.5 bits (88), Expect = 0.010 Identities = 20/81 (24%), Positives = 44/81 (54%) Frame = -2 Query: 442 FDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFES 263 +++ AK E PL ++ +L++ +I + +++ + + NE+ + R ++ ++F Sbjct: 135 YEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSM 194 Query: 262 AALITASVIQVYLLRRLFERK 200 LI + QV+ LRR F+ K Sbjct: 195 FCLIGLATWQVFYLRRFFKAK 215
>TMEDA_RABIT (Q28735) Transmembrane emp24 domain-containing protein 10 precursor| (Transmembrane protein Tmp21) (21 kDa transmembrane trafficking protein) (Integral membrane protein p23) Length = 219 Score = 38.5 bits (88), Expect = 0.010 Identities = 20/81 (24%), Positives = 44/81 (54%) Frame = -2 Query: 442 FDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFES 263 +++ AK E PL ++ +L++ +I + +++ + + NE+ + R ++ ++F Sbjct: 135 YEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSM 194 Query: 262 AALITASVIQVYLLRRLFERK 200 LI + QV+ LRR F+ K Sbjct: 195 FCLIGLATWQVFYLRRFFKAK 215
>TMEDA_MOUSE (Q9D1D4) Transmembrane emp24 domain-containing protein 10 precursor| (Transmembrane protein Tmp21) (21 kDa transmembrane trafficking protein) Length = 219 Score = 38.5 bits (88), Expect = 0.010 Identities = 20/81 (24%), Positives = 44/81 (54%) Frame = -2 Query: 442 FDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFES 263 +++ AK E PL ++ +L++ +I + +++ + + NE+ + R ++ ++F Sbjct: 135 YEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSM 194 Query: 262 AALITASVIQVYLLRRLFERK 200 LI + QV+ LRR F+ K Sbjct: 195 FCLIGLATWQVFYLRRFFKAK 215
>TMEDA_HUMAN (P49755) Transmembrane emp24 domain-containing protein 10 precursor| (Transmembrane protein Tmp21) (21 kDa transmembrane trafficking protein) (p24delta) (S31III125) (S31I125) (Tmp-21-I) Length = 219 Score = 38.5 bits (88), Expect = 0.010 Identities = 20/81 (24%), Positives = 44/81 (54%) Frame = -2 Query: 442 FDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFES 263 +++ AK E PL ++ +L++ +I + +++ + + NE+ + R ++ ++F Sbjct: 135 YEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSM 194 Query: 262 AALITASVIQVYLLRRLFERK 200 LI + QV+ LRR F+ K Sbjct: 195 FCLIGLATWQVFYLRRFFKAK 215
>TMEDA_BOVIN (Q5E971) Transmembrane emp24 domain-containing protein 10 precursor| (Transmembrane protein Tmp21) (21 kDa transmembrane trafficking protein) Length = 219 Score = 38.5 bits (88), Expect = 0.010 Identities = 20/81 (24%), Positives = 44/81 (54%) Frame = -2 Query: 442 FDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFES 263 +++ AK E PL ++ +L++ +I + +++ + + NE+ + R ++ ++F Sbjct: 135 YEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSM 194 Query: 262 AALITASVIQVYLLRRLFERK 200 LI + QV+ LRR F+ K Sbjct: 195 FCLIGLATWQVFYLRRFFKAK 215
>TMEDA_FUGRU (Q90515) Transmembrane emp24 domain-containing protein 10 precursor| (Transmembrane protein Tmp21) (S31III125) Length = 213 Score = 38.5 bits (88), Expect = 0.010 Identities = 20/81 (24%), Positives = 44/81 (54%) Frame = -2 Query: 442 FDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFES 263 +++ AK E PL ++ +L++ +I + +++ + + NE+ + R ++ ++F Sbjct: 129 YEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSM 188 Query: 262 AALITASVIQVYLLRRLFERK 200 LI + QV+ LRR F+ K Sbjct: 189 FCLIGLATWQVFYLRRFFKAK 209
>UVRA_HELPY (P56474) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 935 Score = 37.0 bits (84), Expect = 0.028 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 2/56 (3%) Frame = -2 Query: 394 IAKLDEALYNIQFEQHWLEAQTDRQAILNENMSR--RAIHKALFESAALITASVIQ 233 + +LDE ++ + ++H +EA DR + NEN SR AI KAL ES + ++Q Sbjct: 183 MVRLDEEIHLHKTKKHTIEAVVDRVVVNNENASRIASAIEKALKESYGELEVEILQ 238
>UVRA_HELPJ (Q9ZLD6) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 941 Score = 35.0 bits (79), Expect = 0.11 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 2/56 (3%) Frame = -2 Query: 394 IAKLDEALYNIQFEQHWLEAQTDRQAILNENMSR--RAIHKALFESAALITASVIQ 233 + +LDE ++ + ++H +EA DR I +EN SR A+ KAL ES + ++Q Sbjct: 189 MVRLDEEIHLHKTKKHTIEAVVDRVVINSENASRIASAVEKALKESYGELEVEILQ 244
>EMP24_YEAST (P32803) Endosomal P24B protein precursor (24 kDa endomembrane| protein) (Basic 24 kDa late endocytic intermediate component) Length = 203 Score = 33.1 bits (74), Expect = 0.41 Identities = 22/91 (24%), Positives = 42/91 (46%) Frame = -2 Query: 478 IDFDVHVGHYSYFDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENM 299 + F++H Y D D + + L + KL + ++ EQ ++ + E+ Sbjct: 112 VTFNIHGVVYVDLD----DPNTNTLDSAVRKLSKLTREVKDEQSYIVIRERTHRNTAEST 167 Query: 298 SRRAIHKALFESAALITASVIQVYLLRRLFE 206 + R ++F+ +I S+ Q+Y LRR FE Sbjct: 168 NDRVKWWSIFQLGVVIANSLFQIYYLRRFFE 198
>POXB_ECOLI (P07003) Pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) (Pyruvate| oxidase) (POX) (Pyruvate dehydrogenase [Ubiquinone]) [Contains: Alpha-peptide] Length = 572 Score = 30.8 bits (68), Expect = 2.0 Identities = 20/50 (40%), Positives = 26/50 (52%) Frame = -1 Query: 347 LARGPNRPASNIEREHEQEGHPQGTFRVGCAHYSQRHSSLSATPTLRAQA 198 LA + P+S I + QE HPQ FR C+HY + SS P + A A Sbjct: 96 LAIAAHIPSSEIGSGYFQETHPQELFR-ECSHYCELVSSPEQIPQVLAIA 144
>SYNE2_HUMAN (Q8WXH0) Nesprin-2 (Nuclear envelope spectrin repeat protein 2)| (Syne-2) (Synaptic nuclear envelope protein 2) (Nucleus and actin connecting element protein) (NUANCE protein) Length = 6885 Score = 30.4 bits (67), Expect = 2.7 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 6/80 (7%) Frame = -2 Query: 487 HETIDFDVHVG------HYSYFDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTD 326 +E +F H+G H + + K +H L E I + + IQ +WLEAQ + Sbjct: 5135 YERTEFAEHLGEMNRQWHRVHGMLNRKIQHLEQLLESITESEN---KIQILNNWLEAQEE 5191 Query: 325 RQAILNENMSRRAIHKALFE 266 R L + S ++ K L + Sbjct: 5192 RLKTLQKPESVISVQKLLLD 5211
>MTMRD_XENLA (Q6NTN5) Myotubularin-related protein 13 (SET-binding factor 2)| Length = 1873 Score = 30.0 bits (66), Expect = 3.5 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 5/76 (6%) Frame = +1 Query: 268 RKVPCGWPSCSCSRSILLAGRFGPLASAAQTECCKVLHLTLQFVQTKVKNVHLWHADQ-- 441 R + C CS S +A + PLA+A C K+ QF T V++ +W Q Sbjct: 613 RMMNCALQDCSGSEEYTIASQLLPLATAF---CRKLSAAVSQFAYTCVQDHGVWANQQFW 669 Query: 442 ---NTNNVQHARRSLW 480 N+VQ+ RSL+ Sbjct: 670 ETTFYNDVQNQVRSLY 685
>YE98_SCHPO (O13770) Hypothetical protein C17A5.08 precursor| Length = 210 Score = 30.0 bits (66), Expect = 3.5 Identities = 17/76 (22%), Positives = 36/76 (47%) Frame = -2 Query: 430 AKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFESAALI 251 AKD + + ++ AL I Q++ + + R ++ R +L ES ++ Sbjct: 129 AKDYKKDSMQSTVLEISTALSEIDRVQNYFKTREHRNYSTVKSTQARIFWFSLAESIMVV 188 Query: 250 TASVIQVYLLRRLFER 203 S +QV++++ F+R Sbjct: 189 ALSALQVFIVKTFFKR 204
>GAB1_HUMAN (Q13480) GRB2-associated-binding protein 1 (GRB2-associated binder| 1) Length = 694 Score = 29.3 bits (64), Expect = 5.9 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 7/64 (10%) Frame = -3 Query: 288 PSTRHFSSRLRSLQPASFKSICYADSSSASWG-------HLGSDATSKTPPHRPLEAVTL 130 P +H SS +Q A++ + +S+G H+G ++ KTPP RP+ Sbjct: 455 PPRQHSSSFTEPIQEANYVPMTPGTFDFSSFGMQVPPPAHMGFRSSPKTPPRRPVPVA-- 512 Query: 129 NCAP 118 +C P Sbjct: 513 DCEP 516
>BCPA_CHLLT (Q46135) Bacteriochlorophyll a protein (BChl a protein) (BCP)| (Fenna-Matthews-Olson protein) (FMO-protein) (Fragment) Length = 354 Score = 29.3 bits (64), Expect = 5.9 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 4/60 (6%) Frame = -3 Query: 216 DSSSASWGHLGSDATSKTPPHRPLEA----VTLNCAPLLVCGFFVLHM*SFDSIYDGFEN 49 + S+SWG + + A PP PL V LN PL FV F+SI D +N Sbjct: 9 EGGSSSWGKVKARAKVNVPPASPLLPADCNVKLNVKPLDPAKGFVRISAVFESIVDSTKN 68
>BCPA_CHLTE (Q46393) Bacteriochlorophyll a protein (BChl a protein) (BCP)| (Fenna-Matthews-Olson protein) (FMO-protein) Length = 365 Score = 29.3 bits (64), Expect = 5.9 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 4/60 (6%) Frame = -3 Query: 216 DSSSASWGHLGSDATSKTPPHRPLEA----VTLNCAPLLVCGFFVLHM*SFDSIYDGFEN 49 + S+SWG + + A PP PL V LN PL FV F+SI D +N Sbjct: 20 EGGSSSWGKVKARAKVNAPPASPLLPADCDVKLNVKPLDPAKGFVRISAVFESIVDSTKN 79
>TMED5_PONPY (Q5R809) Transmembrane emp24 domain-containing protein 5 precursor| Length = 229 Score = 28.9 bits (63), Expect = 7.7 Identities = 20/75 (26%), Positives = 30/75 (40%) Frame = -2 Query: 424 DEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFESAALITA 245 D + E I + L Q L A R + E+ R ++ ++ Sbjct: 150 DMKLEDILESINSIKSRLSKSGHIQTLLRAFEARDRNIQESNFDRVNFWSMVNLVVMVVV 209 Query: 244 SVIQVYLLRRLFERK 200 S IQVY+L+ LFE K Sbjct: 210 SAIQVYMLKSLFEDK 224
>TMED5_HUMAN (Q9Y3A6) Transmembrane emp24 domain-containing protein 5 precursor| Length = 229 Score = 28.9 bits (63), Expect = 7.7 Identities = 20/75 (26%), Positives = 30/75 (40%) Frame = -2 Query: 424 DEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFESAALITA 245 D + E I + L Q L A R + E+ R ++ ++ Sbjct: 150 DMKLEDILESINSIKSRLSKSGHIQTLLRAFEARDRNIQESNFDRVNFWSMVNLVVMVVV 209 Query: 244 SVIQVYLLRRLFERK 200 S IQVY+L+ LFE K Sbjct: 210 SAIQVYMLKSLFEDK 224 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,624,305 Number of Sequences: 219361 Number of extensions: 1295406 Number of successful extensions: 3601 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 3507 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3600 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3420806017 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
