ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags16m05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC148920.1| Mus musculus BAC clone RP23-273O10 from chromosom... 42 0.81
2emb|CR626875.10| Zebrafish DNA sequence from clone DKEY-31J4 in ... 42 0.81
3gb|AC153131.5| Mus musculus BAC clone RP24-356O12 from chromosom... 42 0.81
4gb|AY423026.1| Danio rerio dystrobrevin, beta (DTNB) mRNA, compl... 40 3.2
5gb|AC136710.8| Mus musculus chromosome 19, clone RP23-35B13, com... 40 3.2
6gb|AC140320.2| Mus musculus BAC clone RP23-401C13 from chromosom... 40 3.2
7emb|AL731897.12| Human DNA sequence from clone RP11-284G10 on ch... 40 3.2
8emb|AL353788.33| Human DNA sequence from clone RP11-112K13 on ch... 40 3.2
9emb|AL022600.1|SPBC13G1 S.pombe chromosome II cosmid c13G1 40 3.2
10gb|AC036196.10| Homo sapiens chromosome 15, clone RP11-599A21, c... 40 3.2
11gb|AC068870.17| Homo sapiens chromosome , clone RP11-775C24, com... 40 3.2
12ref|NM_199709.1| Danio rerio dystrobrevin, beta (dtnb), mRNA 40 3.2
13ref|NM_001022480.1| Schizosaccharomyces pombe 972h- hypothetical... 40 3.2
14dbj|AP006210.1| Homo sapiens genomic DNA, chromosome 9, clone:RP... 40 3.2
15dbj|AB020873.1| Homo sapiens genomic DNA of 9q32 anti-oncogene o... 40 3.2

>gb|AC148920.1| Mus musculus BAC clone RP23-273O10 from chromosome 19, complete sequence
          Length = 224526

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 187    aagaatttgcagaggtcctag 207
              |||||||||||||||||||||
Sbjct: 184899 aagaatttgcagaggtcctag 184919



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>emb|CR626875.10| Zebrafish DNA sequence from clone DKEY-31J4 in linkage group 15, complete
              sequence
          Length = 212742

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 55     cttcaattgtgtatgaagctcccag 79
              |||||||||||||| ||||||||||
Sbjct: 176829 cttcaattgtgtataaagctcccag 176853



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>gb|AC153131.5| Mus musculus BAC clone RP24-356O12 from chromosome 19, complete
             sequence
          Length = 184864

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 187   aagaatttgcagaggtcctag 207
             |||||||||||||||||||||
Sbjct: 78398 aagaatttgcagaggtcctag 78418



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>gb|AY423026.1| Danio rerio dystrobrevin, beta (DTNB) mRNA, complete cds
          Length = 3069

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 143 caggaagcttcagcgcctcc 162
           ||||||||||||||||||||
Sbjct: 481 caggaagcttcagcgcctcc 462



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>gb|AC136710.8| Mus musculus chromosome 19, clone RP23-35B13, complete sequence
          Length = 206056

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 172    aagaggagttggatgaagaa 191
              ||||||||||||||||||||
Sbjct: 122953 aagaggagttggatgaagaa 122934



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>gb|AC140320.2| Mus musculus BAC clone RP23-401C13 from chromosome 19, complete sequence
          Length = 197365

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 172    aagaggagttggatgaagaa 191
              ||||||||||||||||||||
Sbjct: 133544 aagaggagttggatgaagaa 133563



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>emb|AL731897.12| Human DNA sequence from clone RP11-284G10 on chromosome 9 Contains a
             novel gene, complete sequence
          Length = 125196

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   ccagcaggcaggaagagcac 128
             ||||||||||||||||||||
Sbjct: 73809 ccagcaggcaggaagagcac 73790



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>emb|AL353788.33| Human DNA sequence from clone RP11-112K13 on chromosome Xq26.1-26.3,
              complete sequence
          Length = 162739

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 184    atgaagaatttgcagaggtcctag 207
              |||| |||||||||||||||||||
Sbjct: 109668 atgatgaatttgcagaggtcctag 109645



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>emb|AL022600.1|SPBC13G1 S.pombe chromosome II cosmid c13G1
          Length = 28000

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   aagaggagttggatgaagaa 191
             ||||||||||||||||||||
Sbjct: 14715 aagaggagttggatgaagaa 14734



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>gb|AC036196.10| Homo sapiens chromosome 15, clone RP11-599A21, complete sequence
          Length = 180366

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 171   gaagaggagttggatgaaga 190
             ||||||||||||||||||||
Sbjct: 65348 gaagaggagttggatgaaga 65329



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>gb|AC068870.17| Homo sapiens chromosome , clone RP11-775C24, complete sequence
          Length = 194237

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 171    gaagaggagttggatgaaga 190
              ||||||||||||||||||||
Sbjct: 174310 gaagaggagttggatgaaga 174291



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>ref|NM_199709.1| Danio rerio dystrobrevin, beta (dtnb), mRNA
          Length = 3069

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 143 caggaagcttcagcgcctcc 162
           ||||||||||||||||||||
Sbjct: 481 caggaagcttcagcgcctcc 462



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>ref|NM_001022480.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPBC13G1.09),
           partial mRNA
          Length = 1350

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 172 aagaggagttggatgaagaa 191
           ||||||||||||||||||||
Sbjct: 188 aagaggagttggatgaagaa 207



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>dbj|AP006210.1| Homo sapiens genomic DNA, chromosome 9, clone:RP11-449F3, complete
              sequence
          Length = 165755

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 109    ccagcaggcaggaagagcac 128
              ||||||||||||||||||||
Sbjct: 149607 ccagcaggcaggaagagcac 149588



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>dbj|AB020873.1| Homo sapiens genomic DNA of 9q32 anti-oncogene of flat epitherium
             cancer , segment 5/10
          Length = 100000

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   ccagcaggcaggaagagcac 128
             ||||||||||||||||||||
Sbjct: 97388 ccagcaggcaggaagagcac 97369


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,749,525
Number of Sequences: 3902068
Number of extensions: 1749525
Number of successful extensions: 33184
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33167
Number of HSP's gapped (non-prelim): 17
length of query: 247
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 225
effective length of database: 17,147,199,772
effective search space: 3858119948700
effective search space used: 3858119948700
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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