>PRDX_ASCSU (Q9NL98) Peroxiredoxin (EC 1.11.1.15) (AsPrx) (Thioredoxin|
           peroxidase)
          Length = 195

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 24/87 (27%), Positives = 36/87 (41%)
 Frame = +3

Query: 102 PLDLTYTNTTKITRXSHHIGPLGXKKVVELVLQEEAPTLAVHRLXPRTPSTINNLLEVIT 281
           P+D T+   T+I   S H+G    KK+   VL     +   H     TP     L E+  
Sbjct: 42  PMDFTFVCPTEIIAFSEHVGEF--KKLGVEVLAASTDSQFSHLAWINTPRKQGGLGEM-- 97

Query: 282 TSVVWIKDEKSTITTDFXVINSQKGIS 362
             +  I D    I+ D+ V+    GI+
Sbjct: 98  -KIPIISDNNHQISRDYGVLKEDDGIA 123

>OPSC2_HEMSA (Q25158) Compound eye opsin BCRH2|
          Length = 377

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 113 YIHQHYKNYPXLTPYWAF 166
           Y+HQH+ NYP + P W +
Sbjct: 38  YVHQHWYNYPPVNPMWHY 55

>CTDP1_MOUSE (Q7TSG2) RNA polymerase II subunit A C-terminal domain phosphatase|
           (EC 3.1.3.16) (TFIIF-associating CTD phosphatase)
          Length = 960

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 138 TRXSHHIGPLGXKKVVELVLQEEAPTLAVHRLXPR 242
           TR  +H   LG K + +LVL  +AP  A H +  R
Sbjct: 644 TREHYHATALGAKVLTQLVLSPDAPDRATHLIAAR 678

>FLHA_AQUAE (O67265) Flagellar biosynthesis protein flhA|
          Length = 678

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
 Frame = +3

Query: 177 KVVELVLQEEAPTLAVHRLXP---RTPSTINNLLEVITTSVVWIKDEKS-TITTDFXVIN 344
           KVV+ ++ E+ P   +HR+     R    +N+LL ++ T   +I+  K   + T++    
Sbjct: 507 KVVKEIVPEQVPISIIHRVLQNLLREGIPVNDLLTILETLADYIEQTKDPDLLTEYVRQA 566

Query: 345 SQKGISQNSTTNH--YRSSLGXKMYCKFSAFL 434
             K I++   TN   Y  +L  K+  K   FL
Sbjct: 567 LSKRITRMYLTNGTLYAIALSPKVEAKLVKFL 598

>THID_HELPY (O25515) Phosphomethylpyrimidine kinase (EC 2.7.4.7) (HMP-phosphate|
           kinase) (HMP-P kinase)
          Length = 270

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
 Frame = +3

Query: 156 IGPLGXKKVVELVLQEEAPTLAVHRLXPRTPSTINNLLEVITTSVVWIKDEKST-----I 320
           + P+   K   L+L+EEA      RL P T     NL EV   + V ++D+KS      +
Sbjct: 106 LDPVMVAKNGALLLEEEAILSLKKRLLPTTHLLTPNLPEVYALTGVQVRDDKSASKAMGV 165

Query: 321 TTDFXVINSQKGISQNSTTNHYR 389
             D  V N+   + +   T H++
Sbjct: 166 LRDLGVKNA---VIKGGHTEHFQ 185

>THID_HELPJ (Q9ZL00) Phosphomethylpyrimidine kinase (EC 2.7.4.7) (HMP-phosphate|
           kinase) (HMP-P kinase)
          Length = 269

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
 Frame = +3

Query: 156 IGPLGXKKVVELVLQEEAPTLAVHRLXPRTPSTINNLLEVITTSVVWIKDEKST-----I 320
           + P+   K   L+L+EEA      RL P+T     NL EV   + V  +D+KS      +
Sbjct: 105 LDPVMVAKNGALLLEEEAILSLKKRLLPKTNLLTPNLPEVYALTGVQARDDKSASKAMGV 164

Query: 321 TTDFXVINSQKGISQNSTTNHYR 389
             D  V N+   + +   T H++
Sbjct: 165 LRDLGVKNA---VIKGGHTEHFQ 184

>CTDP1_HUMAN (Q9Y5B0) RNA polymerase II subunit A C-terminal domain phosphatase|
           (EC 3.1.3.16) (TFIIF-associating CTD phosphatase)
          Length = 961

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 138 TRXSHHIGPLGXKKVVELVLQEEAPTLAVHRLXPR 242
           TR  +H   LG K +  LVL  +AP  A H +  R
Sbjct: 654 TREHYHATALGAKILTRLVLSPDAPDRATHLIAAR 688

>MBHL_WOLSU (P31883) Quinone-reactive Ni/Fe-hydrogenase large chain (EC|
           1.12.5.1) (Membrane-bound hydrogenase large subunit)
           (Hydrogen:quinone oxidoreductase)
          Length = 575

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 299 DPHYTGGDDLKKIVNGGWCAWXKSVDSKGRSFFLKDKFY 183
           DP+YTG  D++ +   G     K +D KG+  ++K   Y
Sbjct: 339 DPNYTGFKDMETVGPDGTMVKTKVIDEKGKYTWIKAPRY 377

>UVRC_MYCTU (P67426) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 646

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 143 PGNFCSVGVCKIKREISKPCIL 78
           P   CS GV K  R+I +PC+L
Sbjct: 152 PARTCSAGVFKRHRQIDRPCLL 173

>UVRC_MYCBO (P67427) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 646

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 143 PGNFCSVGVCKIKREISKPCIL 78
           P   CS GV K  R+I +PC+L
Sbjct: 152 PARTCSAGVFKRHRQIDRPCLL 173

>RL1_DESPS (Q6AP81) 50S ribosomal protein L1|
          Length = 235

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 290 YTGGDDLKKIVNGGWCAWXKSV 225
           + GGDDL + + GGW  + K+V
Sbjct: 94  FVGGDDLVEKIQGGWLEFDKTV 115


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,393,301
Number of Sequences: 219361
Number of extensions: 1104395
Number of successful extensions: 2646
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2646
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)